Wall clock time and date at job start Tue Mar 31 2020 18:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46844 * 2 1 4 4 N 1.46499 * 109.46896 * 239.99824 * 2 1 3 5 5 C 1.34773 * 119.99801 * 85.00244 * 4 2 1 6 6 O 1.21587 * 120.00280 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00039 * 179.97438 * 5 4 2 8 8 C 1.46503 * 120.00163 * 179.97438 * 7 5 4 9 9 C 1.53037 * 109.46096 * 275.02872 * 8 7 5 10 10 C 1.53192 * 109.31203 * 178.59719 * 9 8 7 11 11 N 1.46929 * 108.76200 * 54.65862 * 10 9 8 12 12 C 1.36944 * 120.62856 * 126.40572 * 11 10 9 13 13 H 1.07997 * 120.00331 * 331.82325 * 12 11 10 14 14 C 1.38812 * 119.99831 * 151.83132 * 12 11 10 15 15 N 1.31618 * 119.99821 * 343.06125 * 14 12 11 16 16 Si 1.86797 * 119.99916 * 163.07068 * 14 12 11 17 17 H 1.48499 * 109.47268 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47416 * 119.99892 * 16 14 12 19 19 H 1.48511 * 109.46595 * 239.99486 * 16 14 12 20 20 C 1.46922 * 118.74094 * 306.38171 * 11 10 9 21 21 C 1.53045 * 109.45963 * 154.97539 * 8 7 5 22 22 C 1.50704 * 109.46684 * 120.00020 * 2 1 3 23 23 C 1.38288 * 119.97107 * 79.73012 * 22 2 1 24 24 C 1.38241 * 120.10771 * 179.71785 * 23 22 2 25 25 C 1.38162 * 120.05936 * 0.55292 * 24 23 22 26 26 C 1.38716 * 119.94383 * 359.71900 * 25 24 23 27 27 O 1.35895 * 120.05910 * 179.97438 * 26 25 24 28 28 C 1.38122 * 119.96968 * 259.99534 * 22 2 1 29 29 H 1.09003 * 109.47043 * 299.99995 * 1 2 3 30 30 H 1.09000 * 109.47184 * 59.99880 * 1 2 3 31 31 H 1.09003 * 109.47310 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00504 * 265.00124 * 4 2 1 33 33 H 0.96998 * 120.00266 * 0.02562 * 7 5 4 34 34 H 1.09004 * 109.45974 * 35.00472 * 8 7 5 35 35 H 1.08996 * 109.50343 * 298.56734 * 9 8 7 36 36 H 1.09002 * 109.49704 * 58.66534 * 9 8 7 37 37 H 1.08997 * 109.60050 * 294.87214 * 10 9 8 38 38 H 1.09001 * 109.70370 * 174.50756 * 10 9 8 39 39 H 0.97002 * 119.99829 * 180.02562 * 15 14 12 40 40 H 1.09005 * 109.58570 * 293.82177 * 20 11 10 41 41 H 1.09003 * 109.70436 * 173.46678 * 20 11 10 42 42 H 1.09002 * 109.49483 * 301.33868 * 21 8 7 43 43 H 1.08998 * 109.49839 * 61.40400 * 21 8 7 44 44 H 1.08000 * 119.94396 * 359.97315 * 23 22 2 45 45 H 1.07998 * 119.96989 * 180.24479 * 24 23 22 46 46 H 1.08003 * 120.03402 * 179.70120 * 25 24 23 47 47 H 0.96702 * 113.99539 * 270.02575 * 27 26 25 48 48 H 1.07997 * 120.03148 * 0.02953 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8575 1.1613 -2.4118 7 7 2.5967 -0.6535 -3.4574 8 6 2.7361 0.0772 -4.7195 9 6 1.3931 0.0886 -5.4531 10 6 1.5338 0.8832 -6.7553 11 7 2.6428 0.3183 -7.5361 12 6 2.4544 -0.0693 -8.8360 13 1 1.4798 -0.3971 -9.1660 14 6 3.5164 -0.0409 -9.7295 15 7 4.5973 0.6541 -9.4451 16 14 3.4113 -0.9890 -11.3356 17 1 2.1014 -1.6839 -11.4153 18 1 3.5426 -0.0470 -12.4760 19 1 4.5067 -1.9902 -11.3919 20 6 3.9577 0.1775 -6.8961 21 6 3.7898 -0.6088 -5.5922 22 6 2.0323 -0.7105 1.2305 23 6 2.0611 -2.0926 1.2669 24 6 2.5267 -2.7471 2.3920 25 6 2.9538 -2.0217 3.4875 26 6 2.9206 -0.6353 3.4557 27 8 3.3396 0.0805 4.5322 28 6 2.4582 0.0194 2.3231 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2490 -1.6318 -1.1527 33 1 2.8274 -1.5947 -3.4139 34 1 3.0462 1.1017 -4.5137 35 1 1.0944 -0.9345 -5.6814 36 1 0.6376 0.5563 -4.8217 37 1 1.7437 1.9277 -6.5253 38 1 0.6100 0.8140 -7.3297 39 1 5.3393 0.6742 -10.0696 40 1 4.3653 1.1646 -6.6776 41 1 4.6348 -0.3583 -7.5613 42 1 4.7404 -0.6376 -5.0596 43 1 3.4687 -1.6255 -5.8187 44 1 1.7232 -2.6614 0.4133 45 1 2.5520 -3.8265 2.4164 46 1 3.3130 -2.5336 4.3681 47 1 2.6405 0.2751 5.1713 48 1 2.4310 1.0987 2.2960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609573339.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:21 Heat of formation + Delta-G solvation = -53.599053 kcal Electronic energy + Delta-G solvation = -28225.004176 eV Core-core repulsion = 24279.370786 eV Total energy + Delta-G solvation = -3945.633390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.47426 -40.63654 -39.19787 -38.08696 -36.29160 -35.78473 -34.03372 -32.72139 -31.70391 -31.17482 -30.55077 -29.89613 -26.90557 -25.07578 -23.97841 -23.78089 -23.54524 -22.13769 -21.51314 -21.00668 -19.65723 -19.04341 -18.52351 -17.56893 -17.24762 -16.88570 -16.56272 -16.25703 -16.18399 -15.76218 -15.50465 -15.35133 -15.26434 -14.82312 -14.69333 -14.57962 -14.38672 -14.06324 -13.99955 -13.28579 -13.20270 -13.08674 -13.00098 -12.97257 -12.62037 -12.50482 -12.40694 -12.27976 -12.18593 -11.98238 -11.85819 -11.54916 -11.40682 -11.38051 -11.18502 -10.56230 -10.34899 -9.88855 -9.73293 -9.58390 -8.70332 -7.87223 -5.33014 0.23203 0.32594 1.48045 1.49907 1.60851 1.70370 2.19084 2.52490 2.65761 3.19619 3.28284 3.36175 3.59394 3.67581 3.91846 3.92736 4.08255 4.18650 4.25805 4.27314 4.34735 4.36256 4.47796 4.58368 4.66657 4.70678 4.82402 4.85337 4.87888 4.93502 4.99715 5.05164 5.08595 5.17396 5.23861 5.30918 5.37684 5.43443 5.45090 5.48148 5.61091 5.64615 5.65668 5.71174 5.87125 6.05051 6.39743 6.85188 7.13840 7.14988 7.62922 7.84476 8.37691 9.20099 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.029021 B = 0.001979 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.573321 B =14144.979338 C =14352.531866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.204 3.796 3 H 0.072 0.928 4 N -0.727 5.727 5 C 0.702 3.298 6 O -0.634 6.634 7 N -0.726 5.726 8 C 0.182 3.818 9 C -0.122 4.122 10 C 0.144 3.856 11 N -0.609 5.609 12 C -0.261 4.261 13 H 0.068 0.932 14 C -0.052 4.052 15 N -0.936 5.936 16 Si 0.970 3.030 17 H -0.266 1.266 18 H -0.295 1.295 19 H -0.288 1.288 20 C 0.178 3.822 21 C -0.127 4.127 22 C -0.077 4.077 23 C -0.124 4.124 24 C -0.096 4.096 25 C -0.152 4.152 26 C 0.099 3.901 27 O -0.513 6.513 28 C -0.149 4.149 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.409 0.591 33 H 0.410 0.590 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.005 0.995 38 H 0.058 0.942 39 H 0.251 0.749 40 H -0.007 1.007 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.143 0.857 45 H 0.155 0.845 46 H 0.143 0.857 47 H 0.410 0.590 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.247 -10.203 28.824 31.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.098 3.902 3 H 0.090 0.910 4 N -0.385 5.385 5 C 0.402 3.598 6 O -0.515 6.515 7 N -0.381 5.381 8 C 0.076 3.924 9 C -0.162 4.162 10 C 0.018 3.982 11 N -0.332 5.332 12 C -0.391 4.391 13 H 0.086 0.914 14 C -0.247 4.247 15 N -0.582 5.582 16 Si 0.798 3.202 17 H -0.190 1.190 18 H -0.222 1.222 19 H -0.214 1.214 20 C 0.052 3.948 21 C -0.167 4.167 22 C -0.077 4.077 23 C -0.143 4.143 24 C -0.114 4.114 25 C -0.170 4.170 26 C 0.055 3.945 27 O -0.327 6.327 28 C -0.168 4.168 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.247 0.753 33 H 0.246 0.754 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.023 0.977 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.011 0.989 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.161 0.839 45 H 0.172 0.828 46 H 0.161 0.839 47 H 0.269 0.731 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.852 -9.135 28.411 30.412 hybrid contribution 0.046 -0.436 -0.803 0.916 sum -5.806 -9.571 27.608 29.791 Atomic orbital electron populations 1.22120 0.93457 1.03124 1.02279 1.19539 0.94545 0.95500 0.80583 0.90953 1.45098 1.71509 1.14125 1.07734 1.16113 0.78027 0.84682 0.81013 1.90899 1.58728 1.16492 1.85357 1.45123 1.70405 1.14293 1.08252 1.20478 0.95297 0.95128 0.81473 1.22168 0.96934 1.00919 0.96211 1.20971 0.91442 0.93949 0.91830 1.44361 1.07016 1.72126 1.09727 1.19558 0.96755 1.36246 0.86558 0.91414 1.25842 0.97784 1.00114 1.00972 1.70196 1.07748 1.42389 1.37917 0.85176 0.77826 0.77971 0.79258 1.19004 1.22204 1.21410 1.20563 0.87392 0.95554 0.91281 1.22252 0.98048 1.00132 0.96252 1.19702 0.99300 0.94464 0.94273 1.21193 1.00414 0.93069 0.99576 1.21343 0.96626 1.01410 0.92036 1.21720 1.01432 0.92981 1.00871 1.18563 0.97360 0.90295 0.88272 1.84787 1.40064 1.74406 1.33405 1.21367 1.00610 1.00825 0.94046 0.90391 0.93686 0.90810 0.75323 0.75435 0.92808 0.91451 0.92364 0.97652 0.92374 0.94036 0.98889 0.91805 0.90665 0.90961 0.83902 0.82774 0.83913 0.73068 0.85484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.46 71.98 0.68 -1.93 16 2 C 0.20 3.89 2.77 44.25 0.12 4.01 16 3 H 0.07 1.77 7.44 -2.39 -0.02 1.75 16 4 N -0.73 -14.31 5.03 -461.41 -2.32 -16.64 16 5 C 0.70 20.13 8.50 179.06 1.52 21.65 16 6 O -0.63 -24.33 15.67 -3.99 -0.06 -24.39 16 7 N -0.73 -19.20 5.08 -457.67 -2.33 -21.53 16 8 C 0.18 6.28 2.42 45.02 0.11 6.38 16 9 C -0.12 -4.42 5.65 30.67 0.17 -4.24 16 10 C 0.14 6.35 6.52 86.36 0.56 6.91 16 11 N -0.61 -30.99 2.99 -699.09 -2.09 -33.08 16 12 C -0.26 -14.38 9.58 84.03 0.81 -13.58 16 13 H 0.07 3.64 7.88 -2.91 -0.02 3.61 16 14 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 15 N -0.94 -55.56 11.19 21.65 0.24 -55.32 16 16 Si 0.97 44.62 29.59 68.60 2.03 46.65 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 18 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 19 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 20 C 0.18 8.60 5.30 86.36 0.46 9.06 16 21 C -0.13 -4.55 5.55 30.67 0.17 -4.37 16 22 C -0.08 -1.18 4.95 -19.88 -0.10 -1.28 16 23 C -0.12 -1.42 9.05 22.28 0.20 -1.22 16 24 C -0.10 -0.95 10.04 22.25 0.22 -0.73 16 25 C -0.15 -1.80 9.99 22.37 0.22 -1.57 16 26 C 0.10 1.48 6.71 22.51 0.15 1.63 16 27 O -0.51 -6.93 13.50 -92.37 -1.25 -8.18 16 28 C -0.15 -2.44 9.61 22.37 0.21 -2.23 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.41 5.37 6.90 -92.71 -0.64 4.74 16 33 H 0.41 7.89 8.62 -92.71 -0.80 7.09 16 34 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 35 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 39 H 0.25 14.33 8.31 -92.71 -0.77 13.55 16 40 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 41 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 42 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.14 1.04 6.93 -2.91 -0.02 1.02 16 45 H 0.15 0.70 8.06 -2.91 -0.02 0.68 16 46 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 47 H 0.41 1.43 9.06 -74.06 -0.67 0.76 16 48 H 0.13 2.07 8.04 -2.91 -0.02 2.04 16 Total: -1.00 -75.12 389.52 -0.96 -76.08 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -1.12 Total: 20.39 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 5.94 Total: 16.02 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -6.50 Total: -126.56 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -1.31 Total: -32.57 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -75.12 -0.96 -76.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609573339.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.479 kcal (2) G-P(sol) polarization free energy of solvation -75.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds