Wall clock time and date at job start Tue Mar 31 2020 18:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.50792 * 2 1 4 4 C 1.53096 * 109.54331 * 120.11162 * 2 1 3 5 5 N 1.47016 * 109.25579 * 176.80031 * 4 2 1 6 6 C 1.46908 * 110.99893 * 177.60742 * 5 4 2 7 7 C 1.53001 * 109.47121 * 189.68533 * 6 5 4 8 8 N 1.46501 * 109.47157 * 179.97438 * 7 6 5 9 9 C 1.34774 * 120.00214 * 179.97438 * 8 7 6 10 10 O 1.21585 * 119.99531 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00349 * 180.02562 * 9 8 7 12 12 C 1.39240 * 120.00313 * 175.70987 * 11 9 8 13 13 C 1.39475 * 119.83270 * 215.01606 * 12 11 9 14 14 C 1.36381 * 120.16720 * 179.76080 * 13 12 11 15 15 C 1.40874 * 119.82255 * 0.49328 * 14 13 12 16 16 C 1.41161 * 120.15569 * 179.74209 * 15 14 13 17 17 H 1.08001 * 119.99556 * 214.80624 * 16 15 14 18 18 C 1.39891 * 120.00336 * 34.80459 * 16 15 14 19 19 N 1.30877 * 120.00251 * 355.55770 * 18 16 15 20 20 Si 1.86795 * 119.99982 * 175.55544 * 18 16 15 21 21 H 1.48507 * 109.47136 * 60.00166 * 20 18 16 22 22 H 1.48495 * 109.47233 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47251 * 300.00174 * 20 18 16 24 24 C 1.40861 * 119.67734 * 359.76497 * 15 14 13 25 25 C 1.36376 * 119.82885 * 359.97438 * 24 15 14 26 26 C 1.47009 * 110.75404 * 301.38129 * 5 4 2 27 27 C 1.53096 * 109.25831 * 58.61946 * 26 5 4 28 28 O 1.43018 * 109.25685 * 303.14908 * 27 26 5 29 29 H 1.09004 * 109.47262 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46644 * 299.99830 * 1 2 3 31 31 H 1.08995 * 109.47334 * 60.00031 * 1 2 3 32 32 H 1.08998 * 109.51092 * 296.73691 * 4 2 1 33 33 H 1.09005 * 109.51111 * 56.86768 * 4 2 1 34 34 H 1.09001 * 109.46858 * 309.67881 * 6 5 4 35 35 H 1.08996 * 109.47406 * 69.67874 * 6 5 4 36 36 H 1.08998 * 109.47009 * 299.99866 * 7 6 5 37 37 H 1.08997 * 109.47265 * 59.99897 * 7 6 5 38 38 H 0.97005 * 119.99709 * 0.02562 * 8 7 6 39 39 H 0.97000 * 119.99540 * 355.70322 * 11 9 8 40 40 H 1.07994 * 119.91967 * 0.02562 * 13 12 11 41 41 H 1.07990 * 120.08704 * 180.25387 * 14 13 12 42 42 H 0.96993 * 120.00393 * 180.02562 * 19 18 16 43 43 H 1.07998 * 120.08798 * 179.97438 * 24 15 14 44 44 H 1.08003 * 119.91818 * 180.02562 * 25 24 15 45 45 H 1.08993 * 109.50905 * 298.68017 * 26 5 4 46 46 H 1.09009 * 109.54113 * 178.57269 * 26 5 4 47 47 H 1.09001 * 109.50813 * 183.21628 * 27 26 5 48 48 H 1.09004 * 109.54263 * 63.10120 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7238 1.2481 5 7 3.5102 -0.7875 1.2034 6 6 4.0465 -1.4258 2.4130 7 6 5.5671 -1.2596 2.4460 8 7 6.1018 -1.8957 3.6526 9 6 7.4276 -1.8751 3.8942 10 8 8.1798 -1.3290 3.1105 11 7 7.9196 -2.4606 5.0039 12 6 9.2955 -2.5178 5.2093 13 6 9.8578 -3.6291 5.8372 14 6 11.2052 -3.6944 6.0374 15 6 12.0283 -2.6310 5.6176 16 6 13.4232 -2.6888 5.8262 17 1 13.9734 -1.7869 6.0507 18 6 14.0928 -3.9141 5.7423 19 7 13.4157 -5.0186 5.5567 20 14 15.9536 -3.9739 5.8949 21 1 16.3594 -3.4331 7.2172 22 1 16.4153 -5.3799 5.7729 23 1 16.5653 -3.1561 4.8168 24 6 11.4524 -1.5096 4.9890 25 6 10.1040 -1.4610 4.7908 26 6 3.9648 -1.4870 -0.0070 27 6 3.4334 -0.7556 -1.2425 28 8 2.0075 -0.6759 -1.1665 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.7283 -0.1798 2.1389 33 1 1.6347 -1.7345 1.2757 34 1 3.6106 -0.9567 3.2951 35 1 3.7970 -2.4868 2.4051 36 1 6.0030 -1.7287 1.5640 37 1 5.8165 -0.1986 2.4541 38 1 5.5017 -2.3323 4.2772 39 1 7.3150 -2.8421 5.6595 40 1 9.2250 -4.4418 6.1618 41 1 11.6396 -4.5572 6.5201 42 1 13.8800 -5.8682 5.4989 43 1 12.0771 -0.6904 4.6649 44 1 9.6610 -0.6020 4.3087 45 1 3.5881 -2.5098 0.0005 46 1 5.0545 -1.5007 -0.0328 47 1 3.7200 -1.3027 -2.1407 48 1 3.8527 0.2499 -1.2794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726255484.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:22 Heat of formation + Delta-G solvation = -43.268241 kcal Electronic energy + Delta-G solvation = -27475.039460 eV Core-core repulsion = 23529.854047 eV Total energy + Delta-G solvation = -3945.185413 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.21584 -39.79161 -37.55844 -36.63120 -34.57272 -34.16628 -33.22573 -32.82736 -30.09014 -29.50840 -28.85947 -28.18330 -25.54159 -24.60889 -23.77584 -21.93424 -21.45902 -20.87453 -20.76655 -20.03528 -17.97877 -17.22623 -16.94944 -16.71269 -16.48316 -15.96946 -15.64907 -15.21653 -15.14651 -14.91311 -14.72048 -14.06299 -13.89915 -13.82562 -13.72374 -13.07850 -12.91841 -12.77601 -12.63990 -12.39233 -12.24686 -12.09849 -11.89918 -11.65063 -11.56907 -11.35261 -11.29393 -11.09493 -10.98468 -10.86746 -10.69106 -10.08970 -9.99277 -9.51550 -9.43451 -9.20937 -8.93842 -8.85203 -8.82260 -7.49841 -6.79489 -6.57194 -4.29522 2.67760 2.84424 3.11260 3.12881 3.14782 3.19958 3.35524 3.53944 3.72375 4.01561 4.30710 4.47397 4.53244 4.66241 4.70550 4.74027 4.75616 4.82154 4.88618 5.04009 5.11960 5.15359 5.21152 5.23452 5.43048 5.49642 5.61633 5.68053 5.69639 5.71794 5.81365 6.22684 6.40586 6.48614 6.49493 6.61472 6.80422 6.81103 6.84978 7.08655 7.19172 7.30782 7.44019 7.69526 7.90167 8.00803 8.13623 8.35308 8.49129 8.68138 8.96404 8.97616 9.12156 10.34113 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.034023 B = 0.001681 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.773285 B =16648.397975 C =16948.293345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.088 3.912 3 H 0.068 0.932 4 C 0.025 3.975 5 N -0.533 5.533 6 C 0.046 3.954 7 C 0.144 3.856 8 N -0.754 5.754 9 C 0.696 3.304 10 O -0.576 6.576 11 N -0.667 5.667 12 C 0.023 3.977 13 C -0.124 4.124 14 C -0.140 4.140 15 C 0.097 3.903 16 C -0.462 4.462 17 H 0.075 0.925 18 C 0.070 3.930 19 N -0.814 5.814 20 Si 0.915 3.085 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.267 1.267 24 C -0.204 4.204 25 C -0.087 4.087 26 C 0.011 3.989 27 C 0.065 3.935 28 O -0.384 6.384 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.391 0.609 39 H 0.391 0.609 40 H 0.090 0.910 41 H 0.132 0.868 42 H 0.277 0.723 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.045 0.955 46 H 0.094 0.906 47 H 0.100 0.900 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.705 4.705 -6.637 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 H 0.086 0.914 4 C -0.103 4.103 5 N -0.258 5.258 6 C -0.082 4.082 7 C 0.019 3.981 8 N -0.411 5.411 9 C 0.396 3.604 10 O -0.453 6.453 11 N -0.313 5.313 12 C -0.069 4.069 13 C -0.144 4.144 14 C -0.160 4.160 15 C 0.095 3.905 16 C -0.493 4.493 17 H 0.093 0.907 18 C -0.145 4.145 19 N -0.442 5.442 20 Si 0.740 3.260 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.191 1.191 24 C -0.224 4.224 25 C -0.107 4.107 26 C -0.117 4.117 27 C -0.012 4.012 28 O -0.303 6.303 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.224 0.776 39 H 0.224 0.776 40 H 0.108 0.892 41 H 0.149 0.851 42 H 0.088 0.912 43 H 0.114 0.886 44 H 0.127 0.873 45 H 0.063 0.937 46 H 0.112 0.888 47 H 0.118 0.882 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.912 5.360 -7.580 24.722 hybrid contribution 0.136 -1.402 0.820 1.630 sum -22.777 3.957 -6.760 24.086 Atomic orbital electron populations 1.21752 0.92740 1.02976 1.02777 1.22159 0.94832 0.95756 0.84214 0.91380 1.22830 0.87414 1.00390 0.99673 1.62061 1.08878 1.52900 1.01978 1.22257 0.95161 0.97628 0.93182 1.20999 0.91198 0.98822 0.87058 1.44994 1.06461 1.63022 1.26649 1.15970 0.81674 0.80523 0.82207 1.90917 1.56761 1.49182 1.48409 1.42105 1.06935 1.61207 1.21060 1.17077 0.80175 0.97318 1.12380 1.20289 0.95862 0.94875 1.03402 1.21169 0.90674 1.01316 1.02859 1.17715 0.93404 0.90921 0.88467 1.19449 0.92804 0.94042 1.43055 0.90707 1.25858 1.00838 0.95109 0.92691 1.69754 1.37439 0.99044 1.37946 0.86259 0.82195 0.77813 0.79703 1.19101 1.20494 1.19139 1.20806 0.93801 1.01213 1.06544 1.20432 0.93723 0.96663 0.99881 1.22930 1.02013 0.96290 0.90483 1.22662 0.80706 1.00620 0.97226 1.87990 1.21256 1.78382 1.42713 0.91886 0.90861 0.91458 0.89508 0.93810 0.89903 0.93990 0.91761 0.90795 0.77597 0.77575 0.89193 0.85061 0.91180 0.88635 0.87328 0.93709 0.88757 0.88217 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.57 37.16 0.36 -0.44 16 2 C 0.09 0.66 3.42 -26.68 -0.09 0.57 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 4 C 0.03 0.18 4.93 -3.71 -0.02 0.16 16 5 N -0.53 -4.55 4.73 -234.30 -1.11 -5.66 16 6 C 0.05 0.38 5.07 -3.82 -0.02 0.36 16 7 C 0.14 1.63 5.60 -4.04 -0.02 1.60 16 8 N -0.75 -9.31 5.56 -65.23 -0.36 -9.67 16 9 C 0.70 12.44 8.39 -86.92 -0.73 11.71 16 10 O -0.58 -12.95 13.76 5.29 0.07 -12.88 16 11 N -0.67 -11.83 5.31 -14.10 -0.07 -11.90 16 12 C 0.02 0.52 6.31 -83.57 -0.53 0.00 16 13 C -0.12 -2.85 9.90 -39.79 -0.39 -3.24 16 14 C -0.14 -3.64 8.62 -39.25 -0.34 -3.98 16 15 C 0.10 2.65 5.55 -106.80 -0.59 2.06 16 16 C -0.46 -12.51 9.02 -37.85 -0.34 -12.85 16 17 H 0.07 1.94 7.85 -52.49 -0.41 1.53 16 18 C 0.07 1.79 5.42 -17.34 -0.09 1.69 16 19 N -0.81 -21.45 10.60 55.54 0.59 -20.86 16 20 Si 0.92 19.26 29.56 -169.99 -5.03 14.23 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 C -0.20 -5.26 9.74 -39.26 -0.38 -5.64 16 25 C -0.09 -2.13 8.61 -39.79 -0.34 -2.47 16 26 C 0.01 0.09 5.43 -3.72 -0.02 0.07 16 27 C 0.06 0.52 7.01 37.21 0.26 0.78 16 28 O -0.38 -3.60 10.47 -35.23 -0.37 -3.97 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 33 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.59 8.04 -51.93 -0.42 0.17 16 35 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 36 H 0.06 0.81 6.51 -51.93 -0.34 0.47 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.39 3.48 8.49 -40.82 -0.35 3.13 16 39 H 0.39 5.33 8.83 -40.82 -0.36 4.97 16 40 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.13 3.51 6.13 -52.49 -0.32 3.19 16 42 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 43 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 44 H 0.11 2.66 6.22 -52.48 -0.33 2.33 16 45 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 0.82 6.37 -51.92 -0.33 0.49 16 47 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 386.25 15.07 5.82 5.82 Total: -1.00 -32.39 386.25 -11.24 -43.62 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -7.48 Total: 10.88 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -3.30 Total: -9.63 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.96 Total: -48.09 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.30 Total: -16.84 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.39 -11.24 -43.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726255484.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.354 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds