Wall clock time and date at job start Tue Mar 31 2020 18:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.50792 * 2 1 4 4 C 1.53096 * 109.54331 * 120.11162 * 2 1 3 5 5 N 1.47016 * 109.25579 * 176.80031 * 4 2 1 6 6 C 1.46908 * 110.99893 * 177.60742 * 5 4 2 7 7 C 1.53001 * 109.47121 * 189.68533 * 6 5 4 8 8 N 1.46501 * 109.47157 * 179.97438 * 7 6 5 9 9 C 1.34774 * 120.00214 * 179.97438 * 8 7 6 10 10 O 1.21585 * 119.99531 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00349 * 180.02562 * 9 8 7 12 12 C 1.39240 * 120.00313 * 175.70987 * 11 9 8 13 13 C 1.39475 * 119.83270 * 215.01606 * 12 11 9 14 14 C 1.36381 * 120.16720 * 179.76080 * 13 12 11 15 15 C 1.40874 * 119.82255 * 0.49328 * 14 13 12 16 16 C 1.41161 * 120.15569 * 179.74209 * 15 14 13 17 17 H 1.08001 * 119.99556 * 214.80624 * 16 15 14 18 18 C 1.39891 * 120.00336 * 34.80459 * 16 15 14 19 19 N 1.30877 * 120.00251 * 355.55770 * 18 16 15 20 20 Si 1.86795 * 119.99982 * 175.55544 * 18 16 15 21 21 H 1.48507 * 109.47136 * 60.00166 * 20 18 16 22 22 H 1.48495 * 109.47233 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47251 * 300.00174 * 20 18 16 24 24 C 1.40861 * 119.67734 * 359.76497 * 15 14 13 25 25 C 1.36376 * 119.82885 * 359.97438 * 24 15 14 26 26 C 1.47009 * 110.75404 * 301.38129 * 5 4 2 27 27 C 1.53096 * 109.25831 * 58.61946 * 26 5 4 28 28 O 1.43018 * 109.25685 * 303.14908 * 27 26 5 29 29 H 1.09004 * 109.47262 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46644 * 299.99830 * 1 2 3 31 31 H 1.08995 * 109.47334 * 60.00031 * 1 2 3 32 32 H 1.08998 * 109.51092 * 296.73691 * 4 2 1 33 33 H 1.09005 * 109.51111 * 56.86768 * 4 2 1 34 34 H 1.09001 * 109.46858 * 309.67881 * 6 5 4 35 35 H 1.08996 * 109.47406 * 69.67874 * 6 5 4 36 36 H 1.08998 * 109.47009 * 299.99866 * 7 6 5 37 37 H 1.08997 * 109.47265 * 59.99897 * 7 6 5 38 38 H 0.97005 * 119.99709 * 0.02562 * 8 7 6 39 39 H 0.97000 * 119.99540 * 355.70322 * 11 9 8 40 40 H 1.07994 * 119.91967 * 0.02562 * 13 12 11 41 41 H 1.07990 * 120.08704 * 180.25387 * 14 13 12 42 42 H 0.96993 * 120.00393 * 180.02562 * 19 18 16 43 43 H 1.07998 * 120.08798 * 179.97438 * 24 15 14 44 44 H 1.08003 * 119.91818 * 180.02562 * 25 24 15 45 45 H 1.08993 * 109.50905 * 298.68017 * 26 5 4 46 46 H 1.09009 * 109.54113 * 178.57269 * 26 5 4 47 47 H 1.09001 * 109.50813 * 183.21628 * 27 26 5 48 48 H 1.09004 * 109.54263 * 63.10120 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7238 1.2481 5 7 3.5102 -0.7875 1.2034 6 6 4.0465 -1.4258 2.4130 7 6 5.5671 -1.2596 2.4460 8 7 6.1018 -1.8957 3.6526 9 6 7.4276 -1.8751 3.8942 10 8 8.1798 -1.3290 3.1105 11 7 7.9196 -2.4606 5.0039 12 6 9.2955 -2.5178 5.2093 13 6 9.8578 -3.6291 5.8372 14 6 11.2052 -3.6944 6.0374 15 6 12.0283 -2.6310 5.6176 16 6 13.4232 -2.6888 5.8262 17 1 13.9734 -1.7869 6.0507 18 6 14.0928 -3.9141 5.7423 19 7 13.4157 -5.0186 5.5567 20 14 15.9536 -3.9739 5.8949 21 1 16.3594 -3.4331 7.2172 22 1 16.4153 -5.3799 5.7729 23 1 16.5653 -3.1561 4.8168 24 6 11.4524 -1.5096 4.9890 25 6 10.1040 -1.4610 4.7908 26 6 3.9648 -1.4870 -0.0070 27 6 3.4334 -0.7556 -1.2425 28 8 2.0075 -0.6759 -1.1665 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.7283 -0.1798 2.1389 33 1 1.6347 -1.7345 1.2757 34 1 3.6106 -0.9567 3.2951 35 1 3.7970 -2.4868 2.4051 36 1 6.0030 -1.7287 1.5640 37 1 5.8165 -0.1986 2.4541 38 1 5.5017 -2.3323 4.2772 39 1 7.3150 -2.8421 5.6595 40 1 9.2250 -4.4418 6.1618 41 1 11.6396 -4.5572 6.5201 42 1 13.8800 -5.8682 5.4989 43 1 12.0771 -0.6904 4.6649 44 1 9.6610 -0.6020 4.3087 45 1 3.5881 -2.5098 0.0005 46 1 5.0545 -1.5007 -0.0328 47 1 3.7200 -1.3027 -2.1407 48 1 3.8527 0.2499 -1.2794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726255484.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:21 Heat of formation + Delta-G solvation = -66.237926 kcal Electronic energy + Delta-G solvation = -27476.035500 eV Core-core repulsion = 23529.854047 eV Total energy + Delta-G solvation = -3946.181453 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.44405 -40.70280 -39.27509 -37.53150 -36.16356 -35.45899 -34.61988 -33.76682 -31.50928 -31.15427 -30.24585 -29.05605 -26.86205 -25.81043 -24.51613 -23.42396 -22.72706 -22.36288 -21.68516 -21.35831 -19.45841 -19.10378 -18.25999 -17.45404 -17.34496 -17.03314 -16.85986 -16.49370 -16.07234 -15.91060 -15.81815 -15.63429 -15.18773 -14.97313 -14.75669 -14.53430 -14.33819 -13.97492 -13.60068 -13.57201 -13.24983 -13.19903 -13.03951 -12.91199 -12.81527 -12.77325 -12.59429 -12.46897 -12.13222 -11.99405 -11.83655 -11.48914 -11.38630 -11.24051 -11.03006 -10.66409 -10.62242 -10.10217 -9.48954 -9.44282 -8.67322 -8.47999 -6.30434 0.86498 1.16491 1.40445 1.49545 1.52654 1.66875 2.19920 2.26239 2.69662 2.82807 2.85268 3.45017 3.68119 3.70719 3.85223 3.90430 4.03780 4.14576 4.20929 4.24157 4.39110 4.41414 4.51671 4.55061 4.60835 4.69562 4.72218 4.79462 4.86110 4.89697 4.95504 4.97338 5.09056 5.15444 5.16637 5.27843 5.34591 5.41874 5.46600 5.71299 5.83276 5.84870 5.88047 6.05079 6.13242 6.21483 6.26936 6.42169 6.70459 6.99114 7.03221 7.15888 7.65202 8.44637 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.034023 B = 0.001681 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.773285 B =16648.397975 C =16948.293345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.082 3.918 3 H 0.064 0.936 4 C 0.028 3.972 5 N -0.544 5.544 6 C 0.058 3.942 7 C 0.147 3.853 8 N -0.727 5.727 9 C 0.693 3.307 10 O -0.624 6.624 11 N -0.658 5.658 12 C 0.041 3.959 13 C -0.120 4.120 14 C -0.157 4.157 15 C 0.065 3.935 16 C -0.500 4.500 17 H 0.072 0.928 18 C 0.028 3.972 19 N -0.843 5.843 20 Si 0.988 3.012 21 H -0.258 1.258 22 H -0.268 1.268 23 H -0.266 1.266 24 C -0.219 4.219 25 C -0.099 4.099 26 C 0.013 3.987 27 C 0.064 3.936 28 O -0.402 6.402 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.044 0.956 34 H 0.102 0.898 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.413 0.587 39 H 0.415 0.585 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.284 0.716 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.111 0.889 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.646 4.109 -6.099 26.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.024 3.976 3 H 0.082 0.918 4 C -0.100 4.100 5 N -0.270 5.270 6 C -0.070 4.070 7 C 0.022 3.978 8 N -0.385 5.385 9 C 0.394 3.606 10 O -0.505 6.505 11 N -0.306 5.306 12 C -0.053 4.053 13 C -0.140 4.140 14 C -0.177 4.177 15 C 0.062 3.938 16 C -0.531 4.531 17 H 0.090 0.910 18 C -0.184 4.184 19 N -0.471 5.471 20 Si 0.809 3.191 21 H -0.182 1.182 22 H -0.192 1.192 23 H -0.191 1.191 24 C -0.239 4.239 25 C -0.119 4.119 26 C -0.116 4.116 27 C -0.013 4.013 28 O -0.321 6.321 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.062 0.938 34 H 0.120 0.880 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.250 0.750 39 H 0.252 0.748 40 H 0.144 0.856 41 H 0.137 0.863 42 H 0.095 0.905 43 H 0.113 0.887 44 H 0.125 0.875 45 H 0.061 0.939 46 H 0.105 0.895 47 H 0.129 0.871 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.958 4.750 -7.013 26.356 hybrid contribution 0.540 -1.162 0.595 1.412 sum -24.418 3.589 -6.418 25.501 Atomic orbital electron populations 1.21753 0.91285 1.03104 1.03653 1.22335 0.96004 0.95394 0.83838 0.91808 1.22863 0.86302 1.00596 1.00208 1.62047 1.09911 1.53069 1.01956 1.22144 0.92506 0.98525 0.93849 1.21027 0.93427 0.97499 0.85848 1.44713 1.04664 1.61939 1.27159 1.16153 0.83012 0.79873 0.81598 1.90897 1.58539 1.51121 1.49915 1.41854 1.05423 1.61344 1.21959 1.17088 0.82247 0.96031 1.09949 1.20533 0.95211 0.95770 1.02533 1.21157 0.91993 1.00835 1.03704 1.18033 0.94149 0.91924 0.89676 1.19690 0.93310 0.94907 1.45170 0.90995 1.26714 1.05685 0.94246 0.91728 1.69817 1.39378 0.99624 1.38253 0.85165 0.75876 0.78256 0.79813 1.18215 1.19235 1.19114 1.20918 0.94660 1.01209 1.07115 1.20532 0.93555 0.97502 1.00329 1.22887 1.01546 0.96256 0.90867 1.22714 0.80368 1.00599 0.97618 1.87973 1.21721 1.78677 1.43759 0.92075 0.88942 0.91666 0.87797 0.93804 0.87995 0.92928 0.93152 0.92387 0.74988 0.74755 0.85639 0.86277 0.90522 0.88741 0.87545 0.93883 0.89494 0.87131 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.57 71.98 0.69 -0.60 16 2 C 0.08 1.10 3.42 30.63 0.10 1.21 16 3 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 4 C 0.03 0.34 4.93 86.31 0.43 0.77 16 5 N -0.54 -8.31 4.73 -895.20 -4.23 -12.54 16 6 C 0.06 0.79 5.07 86.30 0.44 1.23 16 7 C 0.15 3.08 5.60 86.38 0.48 3.57 16 8 N -0.73 -16.14 5.56 -478.55 -2.66 -18.80 16 9 C 0.69 23.68 8.39 179.06 1.50 25.18 16 10 O -0.62 -27.99 13.76 -3.98 -0.05 -28.04 16 11 N -0.66 -21.84 5.31 -316.79 -1.68 -23.52 16 12 C 0.04 1.81 6.31 38.56 0.24 2.05 16 13 C -0.12 -5.40 9.90 22.13 0.22 -5.18 16 14 C -0.16 -8.26 8.62 22.48 0.19 -8.06 16 15 C 0.06 3.62 5.55 -21.27 -0.12 3.51 16 16 C -0.50 -27.93 9.02 23.39 0.21 -27.72 16 17 H 0.07 3.88 7.85 -2.91 -0.02 3.86 16 18 C 0.03 1.45 5.42 85.24 0.46 1.91 16 19 N -0.84 -45.00 10.60 21.82 0.23 -44.77 16 20 Si 0.99 39.69 29.56 68.60 2.03 41.71 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 23 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 24 C -0.22 -11.69 9.74 22.48 0.22 -11.47 16 25 C -0.10 -4.90 8.61 22.14 0.19 -4.71 16 26 C 0.01 0.20 5.43 86.31 0.47 0.67 16 27 C 0.06 0.99 7.01 72.01 0.50 1.49 16 28 O -0.40 -7.16 10.47 -148.98 -1.56 -8.72 16 29 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.10 0.90 8.09 -2.39 -0.02 0.89 16 33 H 0.04 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.10 1.05 8.04 -2.39 -0.02 1.03 16 35 H 0.05 0.64 8.12 -2.39 -0.02 0.62 16 36 H 0.05 1.23 6.51 -2.39 -0.02 1.21 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.41 5.78 8.49 -92.70 -0.79 4.99 16 39 H 0.42 9.84 8.83 -92.71 -0.82 9.02 16 40 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 41 H 0.12 6.51 6.13 -2.92 -0.02 6.50 16 42 H 0.28 13.81 8.30 -92.71 -0.77 13.04 16 43 H 0.09 4.87 8.06 -2.91 -0.02 4.85 16 44 H 0.11 5.30 6.22 -2.91 -0.02 5.28 16 45 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.09 1.50 6.37 -2.38 -0.02 1.49 16 47 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -72.25 386.25 -2.32 -74.57 By element: Atomic # 1 Polarization: 36.91 SS G_CDS: -0.62 Total: 36.29 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: 6.24 Total: -16.17 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -8.35 Total: -99.64 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -1.61 Total: -36.76 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.71 kcal Total: -72.25 -2.32 -74.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726255484.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.328 kcal (2) G-P(sol) polarization free energy of solvation -72.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds