Wall clock time and date at job start Tue Mar 31 2020 17:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.78001 * 2 1 4 4 C 1.53238 * 109.62962 * 239.51778 * 2 1 3 5 5 H 1.09004 * 109.51120 * 174.14802 * 4 2 1 6 6 C 1.52993 * 109.49824 * 54.07813 * 4 2 1 7 7 N 1.46897 * 109.33536 * 294.11337 * 4 2 1 8 8 C 1.46907 * 110.99795 * 172.74958 * 7 4 2 9 9 C 1.46903 * 111.27359 * 296.89829 * 7 4 2 10 10 C 1.53240 * 109.33829 * 63.10317 * 9 7 4 11 11 N 1.47075 * 109.62811 * 120.48057 * 2 1 3 12 12 C 1.34778 * 120.88228 * 248.50276 * 11 2 1 13 13 O 1.21587 * 120.00203 * 354.77987 * 12 11 2 14 14 N 1.34773 * 119.99984 * 174.77285 * 12 11 2 15 15 C 1.39948 * 120.00447 * 184.50981 * 14 12 11 16 16 C 1.38957 * 120.02883 * 324.08386 * 15 14 12 17 17 C 1.38165 * 120.06339 * 179.71650 * 16 15 14 18 18 C 1.38167 * 120.13410 * 0.55696 * 17 16 15 19 19 C 1.38907 * 120.07227 * 359.71923 * 18 17 16 20 20 O 1.35753 * 120.03302 * 179.97438 * 19 18 17 21 21 C 1.34834 * 116.99999 * 174.50729 * 20 19 18 22 22 H 1.08003 * 119.99660 * 5.10377 * 21 20 19 23 23 C 1.38654 * 119.99807 * 185.10548 * 21 20 19 24 24 N 1.31556 * 120.00003 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99451 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47281 * 90.00092 * 25 23 21 27 27 H 1.48505 * 109.46689 * 209.99771 * 25 23 21 28 28 H 1.48500 * 109.47572 * 329.99636 * 25 23 21 29 29 C 1.38703 * 120.03881 * 144.35542 * 15 14 12 30 30 H 1.09005 * 109.46795 * 180.48617 * 1 2 3 31 31 H 1.09001 * 109.47538 * 300.48931 * 1 2 3 32 32 H 1.09003 * 109.46948 * 60.48875 * 1 2 3 33 33 H 1.09004 * 109.46823 * 300.13589 * 6 4 2 34 34 H 1.09001 * 109.47476 * 60.12994 * 6 4 2 35 35 H 1.08998 * 109.47491 * 180.13598 * 6 4 2 36 36 H 1.08995 * 109.47074 * 60.00343 * 8 7 4 37 37 H 1.08995 * 109.46780 * 180.02562 * 8 7 4 38 38 H 1.09000 * 109.46976 * 300.00173 * 8 7 4 39 39 H 1.08994 * 109.49493 * 183.06423 * 9 7 4 40 40 H 1.09002 * 109.48777 * 303.14804 * 9 7 4 41 41 H 1.08990 * 109.62716 * 186.45906 * 10 9 7 42 42 H 1.09008 * 109.62578 * 65.88294 * 10 9 7 43 43 H 0.97001 * 120.00186 * 4.51091 * 14 12 11 44 44 H 1.08004 * 119.97015 * 0.02562 * 16 15 14 45 45 H 1.07997 * 119.93273 * 180.26024 * 17 16 15 46 46 H 1.08004 * 119.96266 * 179.69872 * 18 17 16 47 47 H 0.97005 * 119.99368 * 179.97438 * 24 23 21 48 48 H 1.08006 * 120.06538 * 359.97438 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0258 0.0000 4 6 2.0448 -0.7322 -1.2438 5 1 3.1298 -0.6416 -1.2966 6 6 1.4194 -0.1138 -2.4957 7 7 1.6748 -2.1513 -1.1608 8 6 1.9980 -2.8536 -2.4100 9 6 2.3149 -2.8026 -0.0100 10 6 1.8111 -2.1551 1.2843 11 7 2.0241 -0.7027 1.1938 12 6 2.6557 -0.0335 2.1786 13 8 2.9080 1.1485 2.0456 14 7 3.0075 -0.6744 3.3108 15 6 3.5777 0.0396 4.3708 16 6 4.4395 1.0985 4.1121 17 6 4.9983 1.8076 5.1580 18 6 4.7114 1.4590 6.4638 19 6 3.8552 0.3978 6.7290 20 8 3.5743 0.0557 8.0123 21 6 2.6498 -0.9075 8.2007 22 1 2.2302 -1.4266 7.3517 23 6 2.2377 -1.2313 9.4844 24 7 2.7493 -0.5992 10.5185 25 14 0.9564 -2.5653 9.7452 26 1 1.6328 -3.8783 9.8984 27 1 0.1729 -2.2661 10.9708 28 1 0.0446 -2.6118 8.5740 29 6 3.2878 -0.3127 5.6807 30 1 -0.3633 -1.0277 0.0087 31 1 -0.3634 0.5214 0.8855 32 1 -0.3633 0.5062 -0.8944 33 1 0.3344 -0.2037 -2.4421 34 1 1.6941 0.9392 -2.5570 35 1 1.7840 -0.6365 -3.3801 36 1 3.0689 -2.7822 -2.6003 37 1 1.7135 -3.9020 -2.3214 38 1 1.4511 -2.3975 -3.2352 39 1 2.0651 -3.8635 -0.0072 40 1 3.3961 -2.6831 -0.0796 41 1 2.3658 -2.5544 2.1333 42 1 0.7481 -2.3624 1.4077 43 1 2.8654 -1.6306 3.3910 44 1 4.6687 1.3708 3.0924 45 1 5.6644 2.6329 4.9544 46 1 5.1536 2.0121 7.2793 47 1 2.4607 -0.8256 11.4165 48 1 2.6214 -1.1379 5.8843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755932225.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:57 Heat of formation + Delta-G solvation = 1.104442 kcal Electronic energy + Delta-G solvation = -29143.249814 eV Core-core repulsion = 25199.988545 eV Total energy + Delta-G solvation = -3943.261269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.93756 -39.39671 -38.44400 -36.46347 -35.01387 -34.47723 -33.41396 -32.20263 -29.80752 -29.05069 -28.76216 -28.12433 -26.46493 -25.28619 -23.77796 -23.11167 -21.95049 -21.76319 -20.16641 -19.03817 -18.46001 -17.89306 -17.16810 -16.43752 -16.00885 -15.63868 -15.44071 -15.20731 -15.03614 -14.76281 -14.45638 -14.16768 -14.03216 -13.62774 -13.53967 -13.34941 -13.05483 -12.84628 -12.70553 -12.58173 -12.35128 -12.20439 -12.01960 -11.77974 -11.72623 -11.50709 -11.32037 -11.27835 -11.08898 -10.95308 -10.83727 -10.76850 -10.44745 -9.92269 -9.56266 -9.41084 -8.99413 -8.78531 -8.55776 -7.68006 -7.10960 -6.42788 -4.02451 2.09168 2.42534 2.54267 3.11776 3.13442 3.18050 3.28878 3.48306 3.81778 3.97430 4.41336 4.50249 4.58698 4.64113 4.80173 4.85388 4.96921 5.08722 5.11048 5.13465 5.17965 5.26067 5.27398 5.33529 5.41584 5.44047 5.56258 5.59892 5.64458 5.70616 5.77392 5.94211 6.05093 6.11781 6.14766 6.22596 6.29329 6.41236 6.55445 6.65179 6.67121 6.86325 7.04033 7.13991 7.26900 7.37935 7.46296 7.86623 7.97625 8.02025 8.64083 9.02745 9.73766 10.75434 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015340 B = 0.002821 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.796304 B = 9923.362390 C =11088.319668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.165 3.835 3 H 0.103 0.897 4 C 0.072 3.928 5 H 0.045 0.955 6 C -0.150 4.150 7 N -0.534 5.534 8 C 0.022 3.978 9 C 0.042 3.958 10 C 0.113 3.887 11 N -0.628 5.628 12 C 0.709 3.291 13 O -0.570 6.570 14 N -0.682 5.682 15 C 0.195 3.805 16 C -0.203 4.203 17 C -0.064 4.064 18 C -0.201 4.201 19 C 0.168 3.832 20 O -0.177 6.177 21 C -0.391 4.391 22 H 0.090 0.910 23 C 0.039 3.961 24 N -0.863 5.863 25 Si 0.940 3.060 26 H -0.274 1.274 27 H -0.277 1.277 28 H -0.268 1.268 29 C -0.257 4.257 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.024 0.976 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.039 0.961 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.400 0.600 44 H 0.123 0.877 45 H 0.115 0.885 46 H 0.118 0.882 47 H 0.269 0.731 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.028 -5.405 -24.831 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.061 3.939 3 H 0.121 0.879 4 C -0.037 4.037 5 H 0.063 0.937 6 C -0.208 4.208 7 N -0.259 5.259 8 C -0.126 4.126 9 C -0.087 4.087 10 C -0.011 4.011 11 N -0.366 5.366 12 C 0.411 3.589 13 O -0.446 6.446 14 N -0.331 5.331 15 C 0.102 3.898 16 C -0.224 4.224 17 C -0.083 4.083 18 C -0.221 4.221 19 C 0.114 3.886 20 O -0.081 6.081 21 C -0.468 4.468 22 H 0.107 0.893 23 C -0.165 4.165 24 N -0.498 5.498 25 Si 0.764 3.236 26 H -0.199 1.199 27 H -0.203 1.203 28 H -0.193 1.193 29 C -0.279 4.279 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.043 0.957 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.057 0.943 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.237 0.763 44 H 0.141 0.859 45 H 0.133 0.867 46 H 0.136 0.864 47 H 0.079 0.921 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.317 -4.494 -24.399 25.030 hybrid contribution 0.099 -1.360 0.073 1.366 sum -3.218 -5.854 -24.326 25.227 Atomic orbital electron populations 1.22088 0.94392 1.03002 1.01903 1.21123 0.94589 0.96625 0.81543 0.87865 1.22033 0.97893 0.88079 0.95687 0.93677 1.21993 1.02176 1.00677 0.95919 1.61953 1.58830 1.01996 1.03167 1.22435 0.98915 0.99135 0.92144 1.22483 0.96882 0.98829 0.90522 1.21731 1.02077 0.80208 0.97115 1.47423 1.61121 1.07740 1.20328 1.15788 0.78318 0.84883 0.79910 1.90916 1.59789 1.14007 1.79900 1.42743 1.64853 1.11320 1.14158 1.17205 0.93431 0.94000 0.85200 1.20691 1.02159 1.00153 0.99396 1.20547 0.98123 0.98105 0.91561 1.20251 1.05044 1.00103 0.96679 1.19040 0.92609 0.91882 0.85041 1.84009 1.53035 1.51557 1.19481 1.21265 1.18164 1.13550 0.93800 0.89293 1.25264 0.98271 0.98647 0.94310 1.70040 1.41301 1.39803 0.98689 0.85740 0.79615 0.79744 0.78466 1.19932 1.20262 1.19293 1.20784 1.09463 1.07120 0.90501 0.91267 0.92666 0.91395 0.90931 0.91687 0.92167 0.95727 0.91335 0.90710 0.89325 0.94251 0.90064 0.90243 0.76292 0.85881 0.86681 0.86430 0.92066 0.85380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 8.69 37.16 0.32 -1.17 16 2 C 0.17 1.79 2.84 -67.49 -0.19 1.60 16 3 H 0.10 1.31 7.04 -51.93 -0.37 0.95 16 4 C 0.07 0.63 2.31 -67.59 -0.16 0.48 16 5 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 6 C -0.15 -1.00 8.21 37.15 0.31 -0.69 16 7 N -0.53 -4.22 4.23 -234.59 -0.99 -5.21 16 8 C 0.02 0.13 9.01 60.07 0.54 0.67 16 9 C 0.04 0.32 5.62 -3.70 -0.02 0.30 16 10 C 0.11 1.02 6.13 -3.60 -0.02 1.00 16 11 N -0.63 -7.64 2.70 -170.62 -0.46 -8.11 16 12 C 0.71 11.46 8.15 -86.92 -0.71 10.75 16 13 O -0.57 -11.18 13.28 5.29 0.07 -11.11 16 14 N -0.68 -10.96 5.24 -14.24 -0.07 -11.03 16 15 C 0.20 3.87 6.28 -83.71 -0.53 3.34 16 16 C -0.20 -4.05 8.69 -39.34 -0.34 -4.39 16 17 C -0.06 -1.25 10.03 -39.63 -0.40 -1.65 16 18 C -0.20 -4.40 9.99 -39.36 -0.39 -4.80 16 19 C 0.17 4.14 6.64 -39.14 -0.26 3.88 16 20 O -0.18 -5.08 9.76 0.03 0.00 -5.08 16 21 C -0.39 -10.91 9.49 30.89 0.29 -10.62 16 22 H 0.09 2.28 5.20 -52.48 -0.27 2.01 16 23 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 24 N -0.86 -25.37 13.67 55.48 0.76 -24.61 16 25 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 28 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 29 C -0.26 -5.66 9.08 -39.21 -0.36 -6.01 16 30 H 0.07 0.66 7.06 -51.93 -0.37 0.29 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.53 6.36 -51.93 -0.33 0.20 16 33 H 0.07 0.47 6.35 -51.93 -0.33 0.14 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.35 6.32 -51.93 -0.33 0.02 16 36 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 37 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 38 H 0.07 0.41 6.20 -51.93 -0.32 0.08 16 39 H 0.09 0.54 8.06 -51.93 -0.42 0.12 16 40 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.66 5.74 -51.93 -0.30 0.36 16 42 H 0.08 0.69 7.60 -51.92 -0.39 0.29 16 43 H 0.40 5.19 6.36 -40.82 -0.26 4.93 16 44 H 0.12 2.45 6.28 -52.48 -0.33 2.12 16 45 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 46 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 47 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.13 2.76 5.64 -52.48 -0.30 2.47 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -33.41 373.86 -8.92 -42.33 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.83 Total: 8.12 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -2.01 Total: -6.33 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.77 Total: -48.96 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: 0.07 Total: -16.19 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.41 -8.92 -42.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755932225.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.437 kcal (2) G-P(sol) polarization free energy of solvation -33.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds