Wall clock time and date at job start Tue Mar 31 2020 17:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.78001 * 2 1 4 4 C 1.53238 * 109.62962 * 239.51778 * 2 1 3 5 5 H 1.09004 * 109.51120 * 174.14802 * 4 2 1 6 6 C 1.52993 * 109.49824 * 54.07813 * 4 2 1 7 7 N 1.46897 * 109.33536 * 294.11337 * 4 2 1 8 8 C 1.46907 * 110.99795 * 172.74958 * 7 4 2 9 9 C 1.46903 * 111.27359 * 296.89829 * 7 4 2 10 10 C 1.53240 * 109.33829 * 63.10317 * 9 7 4 11 11 N 1.47075 * 109.62811 * 120.48057 * 2 1 3 12 12 C 1.34778 * 120.88228 * 248.50276 * 11 2 1 13 13 O 1.21587 * 120.00203 * 354.77987 * 12 11 2 14 14 N 1.34773 * 119.99984 * 174.77285 * 12 11 2 15 15 C 1.39948 * 120.00447 * 184.50981 * 14 12 11 16 16 C 1.38957 * 120.02883 * 324.08386 * 15 14 12 17 17 C 1.38165 * 120.06339 * 179.71650 * 16 15 14 18 18 C 1.38167 * 120.13410 * 0.55696 * 17 16 15 19 19 C 1.38907 * 120.07227 * 359.71923 * 18 17 16 20 20 O 1.35753 * 120.03302 * 179.97438 * 19 18 17 21 21 C 1.34834 * 116.99999 * 174.50729 * 20 19 18 22 22 H 1.08003 * 119.99660 * 5.10377 * 21 20 19 23 23 C 1.38654 * 119.99807 * 185.10548 * 21 20 19 24 24 N 1.31556 * 120.00003 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99451 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47281 * 90.00092 * 25 23 21 27 27 H 1.48505 * 109.46689 * 209.99771 * 25 23 21 28 28 H 1.48500 * 109.47572 * 329.99636 * 25 23 21 29 29 C 1.38703 * 120.03881 * 144.35542 * 15 14 12 30 30 H 1.09005 * 109.46795 * 180.48617 * 1 2 3 31 31 H 1.09001 * 109.47538 * 300.48931 * 1 2 3 32 32 H 1.09003 * 109.46948 * 60.48875 * 1 2 3 33 33 H 1.09004 * 109.46823 * 300.13589 * 6 4 2 34 34 H 1.09001 * 109.47476 * 60.12994 * 6 4 2 35 35 H 1.08998 * 109.47491 * 180.13598 * 6 4 2 36 36 H 1.08995 * 109.47074 * 60.00343 * 8 7 4 37 37 H 1.08995 * 109.46780 * 180.02562 * 8 7 4 38 38 H 1.09000 * 109.46976 * 300.00173 * 8 7 4 39 39 H 1.08994 * 109.49493 * 183.06423 * 9 7 4 40 40 H 1.09002 * 109.48777 * 303.14804 * 9 7 4 41 41 H 1.08990 * 109.62716 * 186.45906 * 10 9 7 42 42 H 1.09008 * 109.62578 * 65.88294 * 10 9 7 43 43 H 0.97001 * 120.00186 * 4.51091 * 14 12 11 44 44 H 1.08004 * 119.97015 * 0.02562 * 16 15 14 45 45 H 1.07997 * 119.93273 * 180.26024 * 17 16 15 46 46 H 1.08004 * 119.96266 * 179.69872 * 18 17 16 47 47 H 0.97005 * 119.99368 * 179.97438 * 24 23 21 48 48 H 1.08006 * 120.06538 * 359.97438 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0258 0.0000 4 6 2.0448 -0.7322 -1.2438 5 1 3.1298 -0.6416 -1.2966 6 6 1.4194 -0.1138 -2.4957 7 7 1.6748 -2.1513 -1.1608 8 6 1.9980 -2.8536 -2.4100 9 6 2.3149 -2.8026 -0.0100 10 6 1.8111 -2.1551 1.2843 11 7 2.0241 -0.7027 1.1938 12 6 2.6557 -0.0335 2.1786 13 8 2.9080 1.1485 2.0456 14 7 3.0075 -0.6744 3.3108 15 6 3.5777 0.0396 4.3708 16 6 4.4395 1.0985 4.1121 17 6 4.9983 1.8076 5.1580 18 6 4.7114 1.4590 6.4638 19 6 3.8552 0.3978 6.7290 20 8 3.5743 0.0557 8.0123 21 6 2.6498 -0.9075 8.2007 22 1 2.2302 -1.4266 7.3517 23 6 2.2377 -1.2313 9.4844 24 7 2.7493 -0.5992 10.5185 25 14 0.9564 -2.5653 9.7452 26 1 1.6328 -3.8783 9.8984 27 1 0.1729 -2.2661 10.9708 28 1 0.0446 -2.6118 8.5740 29 6 3.2878 -0.3127 5.6807 30 1 -0.3633 -1.0277 0.0087 31 1 -0.3634 0.5214 0.8855 32 1 -0.3633 0.5062 -0.8944 33 1 0.3344 -0.2037 -2.4421 34 1 1.6941 0.9392 -2.5570 35 1 1.7840 -0.6365 -3.3801 36 1 3.0689 -2.7822 -2.6003 37 1 1.7135 -3.9020 -2.3214 38 1 1.4511 -2.3975 -3.2352 39 1 2.0651 -3.8635 -0.0072 40 1 3.3961 -2.6831 -0.0796 41 1 2.3658 -2.5544 2.1333 42 1 0.7481 -2.3624 1.4077 43 1 2.8654 -1.6306 3.3910 44 1 4.6687 1.3708 3.0924 45 1 5.6644 2.6329 4.9544 46 1 5.1536 2.0121 7.2793 47 1 2.4607 -0.8256 11.4165 48 1 2.6214 -1.1379 5.8843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755932225.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:56 Heat of formation + Delta-G solvation = -20.986092 kcal Electronic energy + Delta-G solvation = -29144.207731 eV Core-core repulsion = 25199.988545 eV Total energy + Delta-G solvation = -3944.219186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.08681 -40.80112 -39.81453 -38.12495 -36.08466 -35.70947 -34.37394 -34.13815 -31.13390 -30.53816 -29.58781 -29.35721 -27.31229 -27.07760 -24.77232 -23.84762 -23.48692 -23.22222 -21.46708 -20.27771 -19.62457 -19.48697 -18.78247 -17.58315 -16.94619 -16.78046 -16.74585 -16.43261 -16.31130 -15.99611 -15.76909 -15.54085 -15.47977 -15.27827 -14.66209 -14.44724 -14.22946 -14.15441 -13.65373 -13.57451 -13.33612 -13.22400 -13.17068 -12.89454 -12.74234 -12.67678 -12.55556 -12.51245 -12.46167 -12.11925 -11.99226 -11.92957 -11.62758 -11.43537 -11.30839 -11.03845 -10.72343 -9.91889 -9.37803 -9.24837 -8.85368 -8.45456 -6.14236 0.43898 0.70712 1.36179 1.37786 1.46002 1.54069 1.97673 2.18699 2.69589 2.84645 2.86180 3.16341 3.50945 3.65354 3.80100 3.93390 4.05579 4.11019 4.16361 4.30548 4.33265 4.41972 4.46276 4.48132 4.56202 4.61489 4.65264 4.66496 4.72951 4.80786 4.86813 4.89395 4.95133 4.98893 5.04254 5.11846 5.12282 5.27005 5.29153 5.40934 5.45750 5.54480 5.67433 5.68115 5.81812 6.01474 6.02624 6.08021 6.19784 6.74716 6.98893 7.35797 7.78295 8.77614 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015340 B = 0.002821 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.796304 B = 9923.362390 C =11088.319668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.159 3.841 3 H 0.080 0.920 4 C 0.079 3.921 5 H 0.027 0.973 6 C -0.145 4.145 7 N -0.536 5.536 8 C 0.022 3.978 9 C 0.045 3.955 10 C 0.106 3.894 11 N -0.620 5.620 12 C 0.704 3.296 13 O -0.609 6.609 14 N -0.674 5.674 15 C 0.202 3.798 16 C -0.199 4.199 17 C -0.052 4.052 18 C -0.213 4.213 19 C 0.136 3.864 20 O -0.225 6.225 21 C -0.413 4.413 22 H 0.103 0.897 23 C -0.022 4.022 24 N -0.920 5.920 25 Si 1.018 2.982 26 H -0.261 1.261 27 H -0.274 1.274 28 H -0.252 1.252 29 C -0.258 4.258 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.021 0.979 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.029 0.971 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.415 0.585 44 H 0.130 0.870 45 H 0.153 0.847 46 H 0.120 0.880 47 H 0.273 0.727 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.254 -7.191 -27.832 29.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.055 3.945 3 H 0.098 0.902 4 C -0.030 4.030 5 H 0.045 0.955 6 C -0.203 4.203 7 N -0.262 5.262 8 C -0.126 4.126 9 C -0.084 4.084 10 C -0.017 4.017 11 N -0.356 5.356 12 C 0.406 3.594 13 O -0.488 6.488 14 N -0.324 5.324 15 C 0.107 3.893 16 C -0.220 4.220 17 C -0.070 4.070 18 C -0.233 4.233 19 C 0.084 3.916 20 O -0.132 6.132 21 C -0.489 4.489 22 H 0.120 0.880 23 C -0.220 4.220 24 N -0.558 5.558 25 Si 0.837 3.163 26 H -0.185 1.185 27 H -0.199 1.199 28 H -0.176 1.176 29 C -0.280 4.280 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.039 0.961 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.131 0.869 40 H 0.047 0.953 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.255 0.745 44 H 0.147 0.853 45 H 0.171 0.829 46 H 0.138 0.862 47 H 0.082 0.918 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.550 -6.323 -27.494 28.576 hybrid contribution 0.566 -0.713 0.717 1.159 sum -3.984 -7.035 -26.776 27.970 Atomic orbital electron populations 1.22010 0.93107 1.03299 1.01927 1.21275 0.95471 0.95799 0.81912 0.90221 1.21922 0.96861 0.88864 0.95378 0.95463 1.21974 1.02373 1.00727 0.95229 1.61990 1.58674 1.01473 1.04016 1.22498 0.98895 0.99731 0.91442 1.22497 0.96203 0.99959 0.89728 1.22016 1.03057 0.78109 0.98517 1.47527 1.59541 1.09126 1.19436 1.15952 0.78495 0.84585 0.80337 1.90881 1.61434 1.15784 1.80719 1.42598 1.64514 1.11961 1.13358 1.17211 0.92818 0.93887 0.85369 1.20960 1.01416 0.99766 0.99813 1.20919 0.97586 0.98418 0.90117 1.20478 1.04987 0.99824 0.98014 1.19547 0.93992 0.93368 0.84651 1.83981 1.54580 1.52950 1.21654 1.21808 1.18471 1.13882 0.94760 0.87998 1.26591 1.00524 1.01272 0.93593 1.70191 1.43787 1.42492 0.99349 0.84595 0.76529 0.76358 0.78782 1.18548 1.19864 1.17595 1.20786 1.09345 1.07000 0.90896 0.90644 0.94614 0.89463 0.90291 0.91652 0.90841 0.96059 0.90076 0.89738 0.86882 0.95255 0.89161 0.89149 0.74484 0.85251 0.82924 0.86183 0.91847 0.85303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.69 71.98 0.63 -1.91 16 2 C 0.16 3.28 2.84 44.96 0.13 3.41 16 3 H 0.08 2.04 7.04 -2.38 -0.02 2.02 16 4 C 0.08 1.25 2.31 44.99 0.10 1.35 16 5 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 6 C -0.15 -1.60 8.21 71.98 0.59 -1.01 16 7 N -0.54 -6.98 4.23 -896.09 -3.79 -10.77 16 8 C 0.02 0.20 9.01 127.69 1.15 1.35 16 9 C 0.04 0.58 5.62 86.38 0.49 1.06 16 10 C 0.11 1.67 6.13 86.35 0.53 2.20 16 11 N -0.62 -14.32 2.70 -811.97 -2.20 -16.51 16 12 C 0.70 22.21 8.15 179.06 1.46 23.67 16 13 O -0.61 -23.74 13.28 -3.99 -0.05 -23.79 16 14 N -0.67 -20.93 5.24 -317.23 -1.66 -22.59 16 15 C 0.20 7.88 6.28 38.13 0.24 8.12 16 16 C -0.20 -7.70 8.69 22.42 0.19 -7.51 16 17 C -0.05 -1.95 10.03 22.24 0.22 -1.73 16 18 C -0.21 -9.46 9.99 22.41 0.22 -9.24 16 19 C 0.14 6.88 6.64 22.56 0.15 7.03 16 20 O -0.23 -13.54 9.76 -22.81 -0.22 -13.76 16 21 C -0.41 -23.78 9.49 67.92 0.64 -23.14 16 22 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 23 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 24 N -0.92 -56.25 13.67 21.61 0.30 -55.96 16 25 Si 1.02 42.11 29.55 68.60 2.03 44.14 16 26 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 28 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 29 C -0.26 -11.49 9.08 22.51 0.20 -11.29 16 30 H 0.07 1.23 7.06 -2.38 -0.02 1.22 16 31 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 1.18 6.36 -2.39 -0.02 1.16 16 33 H 0.08 0.79 6.35 -2.39 -0.02 0.77 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.63 6.32 -2.39 -0.02 0.62 16 36 H 0.02 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 38 H 0.08 0.63 6.20 -2.39 -0.01 0.61 16 39 H 0.11 0.95 8.06 -2.39 -0.02 0.93 16 40 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.09 1.25 5.74 -2.39 -0.01 1.23 16 42 H 0.09 1.30 7.60 -2.38 -0.02 1.28 16 43 H 0.42 10.12 6.36 -92.71 -0.59 9.53 16 44 H 0.13 4.96 6.28 -2.91 -0.02 4.94 16 45 H 0.15 4.56 8.06 -2.91 -0.02 4.53 16 46 H 0.12 5.16 8.06 -2.91 -0.02 5.13 16 47 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 48 H 0.13 5.60 5.64 -2.91 -0.02 5.59 16 Total: -1.00 -76.04 373.86 2.22 -73.82 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: 0.40 Total: 33.84 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 7.42 Total: -8.41 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -7.36 Total: -105.83 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -0.28 Total: -37.55 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -76.04 2.22 -73.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755932225.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.837 kcal (2) G-P(sol) polarization free energy of solvation -76.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds