Wall clock time and date at job start Tue Mar 31 2020 17:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08995 * 109.49194 * 2 1 4 4 C 1.53699 * 109.44032 * 120.21032 * 2 1 3 5 5 H 1.09004 * 109.79781 * 54.30406 * 4 2 1 6 6 C 1.52991 * 109.70248 * 293.56662 * 4 2 1 7 7 N 1.47078 * 108.27228 * 173.96001 * 4 2 1 8 8 C 1.34781 * 120.87868 * 128.75703 * 7 4 2 9 9 O 1.21580 * 120.00163 * 5.01449 * 8 7 4 10 10 N 1.34778 * 120.00002 * 185.01791 * 8 7 4 11 11 C 1.39944 * 120.00337 * 174.59401 * 10 8 7 12 12 C 1.38961 * 120.02983 * 325.05132 * 11 10 8 13 13 C 1.38165 * 120.06387 * 179.97438 * 12 11 10 14 14 C 1.38165 * 120.13500 * 0.25991 * 13 12 11 15 15 C 1.38907 * 120.07154 * 359.48552 * 14 13 12 16 16 O 1.35755 * 120.03355 * 180.25584 * 15 14 13 17 17 C 1.34826 * 117.00092 * 186.30699 * 16 15 14 18 18 H 1.07999 * 120.00025 * 5.11747 * 17 16 15 19 19 C 1.38653 * 120.00329 * 185.12054 * 17 16 15 20 20 N 1.31553 * 120.00519 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99641 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47354 * 89.99989 * 21 19 17 23 23 H 1.48502 * 109.47023 * 209.99968 * 21 19 17 24 24 H 1.48505 * 109.47147 * 329.99462 * 21 19 17 25 25 C 1.38695 * 120.03685 * 145.02486 * 11 10 8 26 26 C 1.47076 * 118.23964 * 308.48576 * 7 4 2 27 27 C 1.53236 * 108.52275 * 51.45730 * 26 7 4 28 28 N 1.46894 * 109.49109 * 239.94294 * 2 1 3 29 29 C 1.46900 * 111.00042 * 52.76399 * 28 2 1 30 30 H 1.08997 * 109.46728 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47197 * 300.05133 * 1 2 3 32 32 H 1.08998 * 109.46758 * 60.05523 * 1 2 3 33 33 H 1.09002 * 109.47198 * 291.03029 * 6 4 2 34 34 H 1.09001 * 109.47365 * 51.03014 * 6 4 2 35 35 H 1.08998 * 109.47128 * 171.03037 * 6 4 2 36 36 H 0.96999 * 119.99916 * 354.59807 * 10 8 7 37 37 H 1.07998 * 119.97339 * 359.97438 * 12 11 10 38 38 H 1.07998 * 119.93127 * 179.97438 * 13 12 11 39 39 H 1.08005 * 119.96132 * 179.74582 * 14 13 12 40 40 H 0.96997 * 120.00789 * 180.02562 * 20 19 17 41 41 H 1.08004 * 120.07125 * 0.05057 * 25 11 10 42 42 H 1.09009 * 109.62911 * 171.16867 * 26 7 4 43 43 H 1.09000 * 109.63060 * 291.55132 * 26 7 4 44 44 H 1.09004 * 109.49444 * 66.13134 * 27 26 7 45 45 H 1.09003 * 109.49554 * 186.18266 * 27 26 7 46 46 H 1.09002 * 109.47543 * 188.25338 * 29 28 2 47 47 H 1.09007 * 109.46957 * 308.24653 * 29 28 2 48 48 H 1.08995 * 109.47447 * 68.24862 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7293 1.2525 5 1 1.6002 -1.7245 1.3064 6 6 1.6703 0.0705 2.5028 7 7 3.5048 -0.8425 1.1549 8 6 4.2984 -0.4481 2.1704 9 8 3.8058 -0.0771 3.2182 10 7 5.6381 -0.4648 2.0243 11 6 6.4587 0.0500 3.0343 12 6 6.0438 1.1509 3.7738 13 6 6.8531 1.6594 4.7715 14 6 8.0791 1.0788 5.0335 15 6 8.4971 -0.0252 4.3013 16 8 9.6997 -0.5983 4.5629 17 6 10.1027 -1.5814 3.7329 18 1 9.5174 -1.8234 2.8582 19 6 11.2686 -2.2818 4.0024 20 7 11.6616 -3.2413 3.1929 21 14 12.2806 -1.8637 5.5159 22 1 11.8169 -2.6840 6.6635 23 1 13.7128 -2.1512 5.2486 24 1 12.1167 -0.4234 5.8385 25 6 7.6865 -0.5384 3.2986 26 6 4.0787 -1.4031 -0.0778 27 6 3.4866 -0.6528 -1.2755 28 7 2.0202 -0.6936 -1.1985 29 6 1.4136 -0.1358 -2.4146 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5146 0.8895 32 1 -0.3633 0.5130 -0.8905 33 1 2.2487 0.9940 2.5285 34 1 0.6068 0.3084 2.4793 35 1 1.8907 -0.5212 3.3913 36 1 6.0336 -0.8336 1.2191 37 1 5.0878 1.6096 3.5685 38 1 6.5287 2.5154 5.3446 39 1 8.7113 1.4811 5.8113 40 1 12.4771 -3.7316 3.3815 41 1 8.0114 -1.3939 2.7250 42 1 5.1617 -1.2791 -0.0669 43 1 3.8323 -2.4626 -0.1476 44 1 3.8231 0.3839 -1.2578 45 1 3.8161 -1.1263 -2.2004 46 1 1.6775 -0.7573 -3.2703 47 1 0.3295 -0.1134 -2.3025 48 1 1.7834 0.8771 -2.5734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755932228.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:00 Heat of formation + Delta-G solvation = 14.783981 kcal Electronic energy + Delta-G solvation = -29244.295888 eV Core-core repulsion = 25301.627809 eV Total energy + Delta-G solvation = -3942.668079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.03709 -39.39256 -38.52238 -36.69248 -35.00050 -34.70691 -33.37074 -32.33490 -29.79344 -29.15129 -28.88715 -28.12910 -26.34582 -25.21009 -23.95842 -22.57502 -21.91748 -21.70992 -20.49176 -19.54807 -18.27275 -17.76165 -17.43021 -16.40696 -16.03211 -15.78541 -15.34430 -15.21448 -15.00761 -14.86743 -14.58457 -14.04183 -13.88235 -13.76374 -13.48526 -13.41147 -13.07712 -12.90571 -12.80035 -12.51941 -12.30712 -12.18816 -12.13680 -11.95070 -11.77150 -11.57010 -11.35083 -11.21082 -11.15850 -11.00357 -10.90298 -10.75097 -10.24366 -9.71045 -9.51661 -9.22467 -8.93056 -8.83945 -8.54707 -7.75447 -7.25627 -6.41831 -4.08729 1.99113 2.30903 2.53752 3.21940 3.26193 3.28387 3.41549 3.48968 3.79859 4.24505 4.42540 4.50210 4.54216 4.61302 4.84459 4.87974 4.89475 4.95440 5.09064 5.10640 5.13877 5.19203 5.28550 5.32613 5.41783 5.46245 5.58283 5.62125 5.66094 5.67959 5.87703 5.94431 6.00966 6.08922 6.13786 6.21377 6.30572 6.44092 6.55879 6.60093 6.70317 6.79904 6.95575 7.15205 7.23773 7.26649 7.62514 7.78608 7.96226 8.03799 8.64925 8.94004 9.56893 10.66009 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019859 B = 0.002676 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.604360 B =10462.586245 C =11429.020945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.069 3.931 3 H 0.046 0.954 4 C 0.173 3.827 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.630 5.630 8 C 0.707 3.293 9 O -0.562 6.562 10 N -0.684 5.684 11 C 0.199 3.801 12 C -0.196 4.196 13 C -0.064 4.064 14 C -0.203 4.203 15 C 0.175 3.825 16 O -0.217 6.217 17 C -0.388 4.388 18 H 0.104 0.896 19 C 0.063 3.937 20 N -0.882 5.882 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.259 1.259 25 C -0.245 4.245 26 C 0.113 3.887 27 C 0.042 3.958 28 N -0.538 5.538 29 C 0.019 3.981 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.400 0.600 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.279 0.721 41 H 0.135 0.865 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.040 0.960 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.292 6.161 -10.306 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.040 4.040 3 H 0.064 0.936 4 C 0.069 3.931 5 H 0.095 0.905 6 C -0.196 4.196 7 N -0.368 5.368 8 C 0.410 3.590 9 O -0.438 6.438 10 N -0.334 5.334 11 C 0.106 3.894 12 C -0.217 4.217 13 C -0.083 4.083 14 C -0.222 4.222 15 C 0.122 3.878 16 O -0.122 6.122 17 C -0.464 4.464 18 H 0.121 0.879 19 C -0.140 4.140 20 N -0.520 5.520 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.183 1.183 25 C -0.267 4.267 26 C -0.011 4.011 27 C -0.087 4.087 28 N -0.263 5.263 29 C -0.129 4.129 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.238 0.762 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.089 0.911 41 H 0.152 0.848 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.058 0.942 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -20.483 5.806 -9.413 23.278 hybrid contribution 1.043 0.438 -0.273 1.164 sum -19.440 6.244 -9.686 22.599 Atomic orbital electron populations 1.21977 0.93455 1.02998 1.02275 1.22195 0.95883 0.95846 0.90077 0.93604 1.21288 0.77681 0.99517 0.94570 0.90502 1.22218 0.99109 1.01613 0.96698 1.47427 1.06392 1.67019 1.15997 1.15840 0.80986 0.78628 0.83536 1.90977 1.72627 1.53518 1.26702 1.42912 1.04535 1.64446 1.21466 1.17190 0.89828 0.92540 0.89891 1.20592 1.01527 0.98335 1.01223 1.20514 0.92924 0.98435 0.96428 1.20227 0.98611 0.98611 1.04797 1.18789 0.85006 0.91582 0.92382 1.83613 1.29371 1.47865 1.51314 1.20713 1.09090 1.11351 1.05261 0.87856 1.24452 0.96556 0.94435 0.98533 1.69637 1.24215 1.20902 1.37217 0.86184 0.78518 0.80286 0.81952 1.19912 1.20829 1.18276 1.20904 0.96278 1.04716 1.04813 1.21755 0.97605 0.98523 0.83186 1.22485 0.87778 0.99592 0.98880 1.61956 1.06219 1.55664 1.02461 1.22478 1.00569 0.97673 0.92156 0.91421 0.91340 0.92058 0.91388 0.93487 0.90009 0.76222 0.86258 0.86533 0.86444 0.91092 0.84762 0.89912 0.90178 0.94182 0.89251 0.91227 0.90575 0.95685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.54 37.16 0.32 -0.71 16 2 C 0.07 0.62 2.08 -67.35 -0.14 0.48 16 3 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 4 C 0.17 1.88 3.12 -67.26 -0.21 1.67 16 5 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.14 -1.64 7.58 37.15 0.28 -1.36 16 7 N -0.63 -7.67 3.00 -170.34 -0.51 -8.18 16 8 C 0.71 11.05 7.81 -86.91 -0.68 10.37 16 9 O -0.56 -10.21 9.85 5.30 0.05 -10.15 16 10 N -0.68 -10.83 5.25 -14.24 -0.07 -10.91 16 11 C 0.20 3.82 6.24 -83.72 -0.52 3.30 16 12 C -0.20 -3.67 8.65 -39.34 -0.34 -4.01 16 13 C -0.06 -1.16 10.03 -39.64 -0.40 -1.56 16 14 C -0.20 -4.10 9.99 -39.36 -0.39 -4.50 16 15 C 0.17 4.07 6.64 -39.14 -0.26 3.81 16 16 O -0.22 -5.71 8.58 0.05 0.00 -5.70 16 17 C -0.39 -10.85 9.90 30.89 0.31 -10.55 16 18 H 0.10 2.93 5.53 -52.49 -0.29 2.64 16 19 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 20 N -0.88 -25.26 13.96 55.48 0.77 -24.49 16 21 Si 0.91 21.67 28.62 -169.99 -4.86 16.81 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.26 -6.21 7.11 56.52 0.40 -5.80 16 25 C -0.25 -5.31 9.05 -39.21 -0.35 -5.66 16 26 C 0.11 1.07 6.59 -3.61 -0.02 1.04 16 27 C 0.04 0.34 5.62 -3.70 -0.02 0.32 16 28 N -0.54 -4.54 4.73 -234.29 -1.11 -5.65 16 29 C 0.02 0.13 9.27 60.06 0.56 0.68 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.44 6.48 -51.93 -0.34 0.11 16 32 H 0.06 0.36 6.14 -51.93 -0.32 0.04 16 33 H 0.07 0.94 6.80 -51.93 -0.35 0.58 16 34 H 0.05 0.44 6.31 -51.93 -0.33 0.11 16 35 H 0.08 1.16 6.75 -51.93 -0.35 0.80 16 36 H 0.40 5.30 6.32 -40.82 -0.26 5.05 16 37 H 0.12 2.20 6.54 -52.49 -0.34 1.85 16 38 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.12 2.20 8.06 -52.48 -0.42 1.77 16 40 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.13 3.00 5.71 -52.48 -0.30 2.70 16 42 H 0.08 0.71 5.63 -51.92 -0.29 0.42 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.59 8.11 -51.93 -0.42 0.17 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 0.44 5.72 -51.93 -0.30 0.14 16 48 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -31.48 369.39 -8.97 -40.45 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.83 Total: 7.24 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -1.98 Total: -5.00 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.92 Total: -49.22 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.05 Total: -15.86 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.86 Total: 16.81 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.48 -8.97 -40.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755932228.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.237 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds