Wall clock time and date at job start Tue Mar 31 2020 17:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08995 * 109.49194 * 2 1 4 4 C 1.53699 * 109.44032 * 120.21032 * 2 1 3 5 5 H 1.09004 * 109.79781 * 54.30406 * 4 2 1 6 6 C 1.52991 * 109.70248 * 293.56662 * 4 2 1 7 7 N 1.47078 * 108.27228 * 173.96001 * 4 2 1 8 8 C 1.34781 * 120.87868 * 128.75703 * 7 4 2 9 9 O 1.21580 * 120.00163 * 5.01449 * 8 7 4 10 10 N 1.34778 * 120.00002 * 185.01791 * 8 7 4 11 11 C 1.39944 * 120.00337 * 174.59401 * 10 8 7 12 12 C 1.38961 * 120.02983 * 325.05132 * 11 10 8 13 13 C 1.38165 * 120.06387 * 179.97438 * 12 11 10 14 14 C 1.38165 * 120.13500 * 0.25991 * 13 12 11 15 15 C 1.38907 * 120.07154 * 359.48552 * 14 13 12 16 16 O 1.35755 * 120.03355 * 180.25584 * 15 14 13 17 17 C 1.34826 * 117.00092 * 186.30699 * 16 15 14 18 18 H 1.07999 * 120.00025 * 5.11747 * 17 16 15 19 19 C 1.38653 * 120.00329 * 185.12054 * 17 16 15 20 20 N 1.31553 * 120.00519 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99641 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47354 * 89.99989 * 21 19 17 23 23 H 1.48502 * 109.47023 * 209.99968 * 21 19 17 24 24 H 1.48505 * 109.47147 * 329.99462 * 21 19 17 25 25 C 1.38695 * 120.03685 * 145.02486 * 11 10 8 26 26 C 1.47076 * 118.23964 * 308.48576 * 7 4 2 27 27 C 1.53236 * 108.52275 * 51.45730 * 26 7 4 28 28 N 1.46894 * 109.49109 * 239.94294 * 2 1 3 29 29 C 1.46900 * 111.00042 * 52.76399 * 28 2 1 30 30 H 1.08997 * 109.46728 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47197 * 300.05133 * 1 2 3 32 32 H 1.08998 * 109.46758 * 60.05523 * 1 2 3 33 33 H 1.09002 * 109.47198 * 291.03029 * 6 4 2 34 34 H 1.09001 * 109.47365 * 51.03014 * 6 4 2 35 35 H 1.08998 * 109.47128 * 171.03037 * 6 4 2 36 36 H 0.96999 * 119.99916 * 354.59807 * 10 8 7 37 37 H 1.07998 * 119.97339 * 359.97438 * 12 11 10 38 38 H 1.07998 * 119.93127 * 179.97438 * 13 12 11 39 39 H 1.08005 * 119.96132 * 179.74582 * 14 13 12 40 40 H 0.96997 * 120.00789 * 180.02562 * 20 19 17 41 41 H 1.08004 * 120.07125 * 0.05057 * 25 11 10 42 42 H 1.09009 * 109.62911 * 171.16867 * 26 7 4 43 43 H 1.09000 * 109.63060 * 291.55132 * 26 7 4 44 44 H 1.09004 * 109.49444 * 66.13134 * 27 26 7 45 45 H 1.09003 * 109.49554 * 186.18266 * 27 26 7 46 46 H 1.09002 * 109.47543 * 188.25338 * 29 28 2 47 47 H 1.09007 * 109.46957 * 308.24653 * 29 28 2 48 48 H 1.08995 * 109.47447 * 68.24862 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7293 1.2525 5 1 1.6002 -1.7245 1.3064 6 6 1.6703 0.0705 2.5028 7 7 3.5048 -0.8425 1.1549 8 6 4.2984 -0.4481 2.1704 9 8 3.8058 -0.0771 3.2182 10 7 5.6381 -0.4648 2.0243 11 6 6.4587 0.0500 3.0343 12 6 6.0438 1.1509 3.7738 13 6 6.8531 1.6594 4.7715 14 6 8.0791 1.0788 5.0335 15 6 8.4971 -0.0252 4.3013 16 8 9.6997 -0.5983 4.5629 17 6 10.1027 -1.5814 3.7329 18 1 9.5174 -1.8234 2.8582 19 6 11.2686 -2.2818 4.0024 20 7 11.6616 -3.2413 3.1929 21 14 12.2806 -1.8637 5.5159 22 1 11.8169 -2.6840 6.6635 23 1 13.7128 -2.1512 5.2486 24 1 12.1167 -0.4234 5.8385 25 6 7.6865 -0.5384 3.2986 26 6 4.0787 -1.4031 -0.0778 27 6 3.4866 -0.6528 -1.2755 28 7 2.0202 -0.6936 -1.1985 29 6 1.4136 -0.1358 -2.4146 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5146 0.8895 32 1 -0.3633 0.5130 -0.8905 33 1 2.2487 0.9940 2.5285 34 1 0.6068 0.3084 2.4793 35 1 1.8907 -0.5212 3.3913 36 1 6.0336 -0.8336 1.2191 37 1 5.0878 1.6096 3.5685 38 1 6.5287 2.5154 5.3446 39 1 8.7113 1.4811 5.8113 40 1 12.4771 -3.7316 3.3815 41 1 8.0114 -1.3939 2.7250 42 1 5.1617 -1.2791 -0.0669 43 1 3.8323 -2.4626 -0.1476 44 1 3.8231 0.3839 -1.2578 45 1 3.8161 -1.1263 -2.2004 46 1 1.6775 -0.7573 -3.2703 47 1 0.3295 -0.1134 -2.3025 48 1 1.7834 0.8771 -2.5734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755932228.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:59 Heat of formation + Delta-G solvation = -5.708157 kcal Electronic energy + Delta-G solvation = -29245.184494 eV Core-core repulsion = 25301.627809 eV Total energy + Delta-G solvation = -3943.556685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.18232 -40.87313 -39.73778 -38.25215 -36.16280 -35.78898 -34.48201 -34.23657 -31.17218 -30.61976 -29.65333 -29.32985 -27.21927 -26.99963 -24.95351 -23.59940 -23.32684 -23.01354 -21.53654 -20.75896 -19.88446 -19.40963 -18.78457 -17.58531 -17.06072 -16.85068 -16.68823 -16.57035 -16.10426 -15.92027 -15.78600 -15.65201 -15.51258 -15.14203 -14.71711 -14.61498 -14.19060 -14.14189 -14.00643 -13.72388 -13.53642 -13.27638 -13.19602 -12.92934 -12.78231 -12.69882 -12.61491 -12.48400 -12.41131 -12.10128 -12.04358 -11.90903 -11.83592 -11.48727 -11.21583 -10.83502 -10.45385 -9.83697 -9.40946 -9.28964 -8.89305 -8.49357 -6.21741 0.42220 0.65999 1.32937 1.37063 1.41139 1.53684 1.99584 2.29320 2.67699 2.79107 2.82729 3.09171 3.12842 3.66025 3.75855 3.90405 4.07805 4.10315 4.12777 4.22674 4.30961 4.41627 4.42135 4.48867 4.53243 4.59264 4.61858 4.64819 4.70683 4.74975 4.85477 4.90406 4.91423 4.94045 5.09738 5.15607 5.16362 5.32689 5.35640 5.42646 5.53241 5.59711 5.63012 5.74774 5.81169 5.92162 5.99888 6.06424 6.22986 6.74838 6.85305 7.40010 7.58720 8.62003 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019859 B = 0.002676 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.604360 B =10462.586245 C =11429.020945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.076 3.924 3 H 0.032 0.968 4 C 0.168 3.832 5 H 0.081 0.919 6 C -0.128 4.128 7 N -0.624 5.624 8 C 0.702 3.298 9 O -0.590 6.590 10 N -0.681 5.681 11 C 0.202 3.798 12 C -0.189 4.189 13 C -0.051 4.051 14 C -0.203 4.203 15 C 0.142 3.858 16 O -0.240 6.240 17 C -0.397 4.397 18 H 0.082 0.918 19 C 0.012 3.988 20 N -0.922 5.922 21 Si 0.967 3.033 22 H -0.269 1.269 23 H -0.267 1.267 24 H -0.260 1.260 25 C -0.256 4.256 26 C 0.107 3.893 27 C 0.046 3.954 28 N -0.544 5.544 29 C 0.019 3.981 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.411 0.589 37 H 0.128 0.872 38 H 0.159 0.841 39 H 0.134 0.866 40 H 0.284 0.716 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.031 0.969 45 H 0.110 0.890 46 H 0.079 0.921 47 H 0.086 0.914 48 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.203 7.432 -10.634 25.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 H 0.050 0.950 4 C 0.065 3.935 5 H 0.099 0.901 6 C -0.186 4.186 7 N -0.361 5.361 8 C 0.405 3.595 9 O -0.469 6.469 10 N -0.331 5.331 11 C 0.107 3.893 12 C -0.210 4.210 13 C -0.069 4.069 14 C -0.223 4.223 15 C 0.092 3.908 16 O -0.147 6.147 17 C -0.474 4.474 18 H 0.100 0.900 19 C -0.187 4.187 20 N -0.562 5.562 21 Si 0.790 3.210 22 H -0.194 1.194 23 H -0.192 1.192 24 H -0.185 1.185 25 C -0.278 4.278 26 C -0.016 4.016 27 C -0.083 4.083 28 N -0.269 5.269 29 C -0.128 4.128 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.250 0.750 37 H 0.146 0.854 38 H 0.177 0.823 39 H 0.152 0.848 40 H 0.094 0.906 41 H 0.135 0.865 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.049 0.951 45 H 0.128 0.872 46 H 0.098 0.902 47 H 0.105 0.895 48 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -22.449 7.078 -9.801 25.498 hybrid contribution 1.333 0.143 -0.272 1.368 sum -21.116 7.221 -10.073 24.485 Atomic orbital electron populations 1.21960 0.91596 1.03476 1.03202 1.22095 0.97234 0.94588 0.89413 0.95032 1.21458 0.76784 0.99879 0.95350 0.90098 1.22037 1.00406 1.00091 0.96041 1.47536 1.06798 1.65914 1.15875 1.16005 0.80816 0.78693 0.83967 1.90964 1.73004 1.54859 1.28042 1.42855 1.04678 1.64400 1.21199 1.17230 0.89240 0.92404 0.90402 1.20881 1.01711 0.97599 1.00786 1.20962 0.91449 0.98805 0.95724 1.20528 0.99586 0.97527 1.04635 1.19323 0.84787 0.92841 0.93843 1.83558 1.31225 1.48323 1.51596 1.20679 1.09358 1.12025 1.05310 0.90016 1.25235 0.97595 0.94398 1.01424 1.69713 1.25207 1.22280 1.39040 0.85260 0.77617 0.79745 0.78405 1.19402 1.19206 1.18455 1.20852 0.97407 1.04700 1.04851 1.21985 0.98027 0.99059 0.82507 1.22475 0.87886 0.99015 0.98946 1.61989 1.06203 1.55750 1.02946 1.22539 1.01085 0.97672 0.91511 0.91106 0.90909 0.90703 0.93536 0.90837 0.92666 0.74964 0.85396 0.82319 0.84766 0.90596 0.86503 0.89429 0.89363 0.95076 0.87174 0.90190 0.89522 0.95859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.54 71.99 0.61 -1.01 16 2 C 0.08 1.23 2.08 45.16 0.09 1.32 16 3 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 4 C 0.17 3.47 3.12 45.11 0.14 3.61 16 5 H 0.08 1.63 8.14 -2.38 -0.02 1.62 16 6 C -0.13 -2.94 7.58 71.98 0.55 -2.39 16 7 N -0.62 -14.75 3.00 -811.11 -2.44 -17.18 16 8 C 0.70 21.78 7.81 179.05 1.40 23.18 16 9 O -0.59 -21.37 9.85 -3.97 -0.04 -21.41 16 10 N -0.68 -21.58 5.25 -317.24 -1.67 -23.24 16 11 C 0.20 7.75 6.24 38.13 0.24 7.99 16 12 C -0.19 -6.80 8.65 22.43 0.19 -6.61 16 13 C -0.05 -1.71 10.03 22.23 0.22 -1.49 16 14 C -0.20 -7.97 9.99 22.41 0.22 -7.74 16 15 C 0.14 6.71 6.64 22.56 0.15 6.86 16 16 O -0.24 -12.97 8.58 -22.75 -0.20 -13.17 16 17 C -0.40 -23.15 9.90 67.92 0.67 -22.48 16 18 H 0.08 4.95 5.53 -2.91 -0.02 4.93 16 19 C 0.01 0.69 5.49 84.83 0.47 1.16 16 20 N -0.92 -54.43 13.96 21.61 0.30 -54.13 16 21 Si 0.97 45.23 28.62 68.60 1.96 47.19 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 25 C -0.26 -11.43 9.05 22.51 0.20 -11.23 16 26 C 0.11 1.89 6.59 86.35 0.57 2.46 16 27 C 0.05 0.67 5.62 86.38 0.49 1.15 16 28 N -0.54 -7.95 4.73 -895.16 -4.23 -12.19 16 29 C 0.02 0.20 9.27 127.69 1.18 1.39 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.76 6.48 -2.39 -0.02 0.74 16 32 H 0.07 0.66 6.14 -2.39 -0.01 0.64 16 33 H 0.05 1.26 6.80 -2.39 -0.02 1.25 16 34 H 0.07 1.25 6.31 -2.39 -0.02 1.24 16 35 H 0.05 1.56 6.75 -2.39 -0.02 1.55 16 36 H 0.41 10.98 6.32 -92.71 -0.59 10.39 16 37 H 0.13 4.48 6.54 -2.91 -0.02 4.46 16 38 H 0.16 4.02 8.06 -2.91 -0.02 3.99 16 39 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 40 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.12 5.57 5.71 -2.91 -0.02 5.56 16 42 H 0.09 1.44 5.63 -2.38 -0.01 1.43 16 43 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16 45 H 0.11 1.18 8.11 -2.39 -0.02 1.16 16 46 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.09 0.73 5.72 -2.38 -0.01 0.72 16 48 H 0.02 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -70.06 369.39 1.50 -68.56 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: 0.41 Total: 29.40 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 7.40 Total: -3.84 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -8.03 Total: -106.74 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -0.23 Total: -34.57 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.96 Total: 47.19 kcal Total: -70.06 1.50 -68.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755932228.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.849 kcal (2) G-P(sol) polarization free energy of solvation -70.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds