Wall clock time and date at job start Tue Mar 31 2020 17:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.51168 * 2 1 4 4 C 1.53094 * 109.54168 * 120.10927 * 2 1 3 5 5 N 1.47017 * 109.26173 * 63.10426 * 4 2 1 6 6 C 1.39907 * 111.00135 * 182.39412 * 5 4 2 7 7 C 1.38883 * 120.00445 * 236.09180 * 6 5 4 8 8 C 1.38082 * 119.99339 * 179.72066 * 7 6 5 9 9 C 1.38836 * 120.00527 * 0.55626 * 8 7 6 10 10 N 1.40195 * 119.99431 * 179.69952 * 9 8 7 11 11 C 1.34781 * 119.99646 * 213.30115 * 10 9 8 12 12 O 1.21590 * 120.00216 * 5.31412 * 11 10 9 13 13 N 1.34779 * 119.99726 * 185.31631 * 11 10 9 14 14 C 1.46496 * 119.99997 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47443 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99415 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00148 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00313 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99654 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47733 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46972 * 120.00349 * 19 17 15 22 22 H 1.48498 * 109.47143 * 240.00292 * 19 17 15 23 23 C 1.38845 * 120.01124 * 359.71914 * 9 8 7 24 24 C 1.38080 * 120.00044 * 0.02562 * 23 9 8 25 25 C 1.47009 * 110.74939 * 58.61769 * 5 4 2 26 26 C 1.53104 * 109.26056 * 301.38599 * 25 5 4 27 27 H 1.08996 * 109.50471 * 296.91662 * 26 25 5 28 28 C 1.52995 * 109.54373 * 176.80524 * 26 25 5 29 29 O 1.43015 * 109.25641 * 56.84672 * 26 25 5 30 30 H 1.09001 * 109.47342 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47565 * 300.00486 * 1 2 3 32 32 H 1.09008 * 109.47001 * 59.99902 * 1 2 3 33 33 H 1.08999 * 109.51106 * 183.04155 * 4 2 1 34 34 H 1.09009 * 109.50650 * 303.17196 * 4 2 1 35 35 H 1.07993 * 120.00483 * 0.02562 * 7 6 5 36 36 H 1.07999 * 119.99739 * 180.27040 * 8 7 6 37 37 H 0.96995 * 119.99963 * 33.30272 * 10 9 8 38 38 H 0.96996 * 120.00094 * 0.02562 * 13 11 10 39 39 H 1.09001 * 109.47161 * 299.99889 * 14 13 11 40 40 H 1.08998 * 109.47180 * 60.00042 * 14 13 11 41 41 H 0.96998 * 120.00243 * 179.97438 * 18 17 15 42 42 H 1.07993 * 119.99888 * 179.97438 * 23 9 8 43 43 H 1.08005 * 119.99576 * 179.97438 * 24 23 9 44 44 H 1.09000 * 109.50788 * 181.45068 * 25 5 4 45 45 H 1.09003 * 109.50642 * 61.32072 * 25 5 4 46 46 H 1.09002 * 109.47514 * 300.19836 * 28 26 25 47 47 H 1.09005 * 109.47082 * 60.19453 * 28 26 25 48 48 H 1.09005 * 109.47302 * 180.19527 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7238 1.2481 5 7 1.6126 -2.1291 1.2042 6 6 2.0159 -2.8129 2.3563 7 6 2.7891 -3.9614 2.2474 8 6 3.1918 -4.6328 3.3848 9 6 2.8142 -4.1663 4.6368 10 7 3.2180 -4.8517 5.7912 11 6 2.4125 -4.8853 6.8713 12 8 1.2970 -4.4050 6.8130 13 7 2.8436 -5.4512 8.0160 14 6 1.9683 -5.4872 9.1902 15 6 2.6828 -6.1687 10.3287 16 1 3.6882 -6.5385 10.1911 17 6 2.0530 -6.3202 11.5458 18 7 0.8286 -5.8704 11.7132 19 14 2.9385 -7.1657 12.9567 20 1 4.2949 -7.5775 12.5142 21 1 3.0554 -6.2268 14.1013 22 1 2.1692 -8.3645 13.3764 23 6 2.0364 -3.0213 4.7457 24 6 1.6379 -2.3467 3.6087 25 6 2.1201 -2.7913 -0.0062 26 6 1.6073 -2.0468 -1.2419 27 1 0.5196 -2.1069 -1.2776 28 6 2.1958 -2.6822 -2.5031 29 8 2.0075 -0.6759 -1.1664 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 3.1307 -0.6766 1.2753 34 1 1.6340 -0.2462 2.1390 35 1 3.0795 -4.3266 1.2735 36 1 3.7968 -5.5234 3.3004 37 1 4.0769 -5.3017 5.8125 38 1 3.7336 -5.8339 8.0627 39 1 1.7087 -4.4693 9.4812 40 1 1.0599 -6.0392 8.9495 41 1 0.3854 -5.9773 12.5694 42 1 1.7424 -2.6589 5.7195 43 1 1.0325 -1.4563 3.6935 44 1 1.7691 -3.8229 -0.0311 45 1 3.2100 -2.7771 0.0009 46 1 3.2836 -2.6232 -2.4661 47 1 1.8904 -3.7270 -2.5600 48 1 1.8327 -2.1491 -3.3819 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785751167.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:42 Heat of formation + Delta-G solvation = -60.016939 kcal Electronic energy + Delta-G solvation = -28077.966392 eV Core-core repulsion = 24132.054701 eV Total energy + Delta-G solvation = -3945.911691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.86725 -41.23017 -39.57171 -37.18171 -36.11118 -35.04863 -34.47088 -34.23367 -31.99773 -31.43005 -29.86338 -28.61924 -28.00594 -26.00809 -24.71920 -24.30447 -23.14162 -22.40166 -21.70945 -20.50311 -19.83030 -18.91680 -18.20011 -17.93624 -17.48704 -16.84404 -16.76657 -16.35308 -16.31270 -15.99310 -15.78860 -15.66076 -15.18213 -14.92002 -14.83394 -14.50582 -14.20828 -14.06345 -13.85944 -13.71005 -13.40044 -13.26073 -13.09349 -12.88208 -12.87317 -12.76585 -12.75597 -12.51219 -12.22509 -12.06651 -11.93642 -11.63534 -11.45899 -11.31886 -11.20906 -10.82812 -10.63770 -10.12146 -9.90541 -9.79991 -8.47278 -8.29600 -6.46081 0.31395 0.42856 1.43355 1.44854 1.57757 1.74928 2.09304 2.38453 2.54619 2.78012 2.90980 3.05748 3.41296 3.72173 3.78660 3.84052 4.00064 4.05041 4.09222 4.18454 4.37030 4.40372 4.42803 4.45722 4.53631 4.61519 4.66819 4.68725 4.77372 4.91317 4.96814 5.02473 5.04183 5.08978 5.11726 5.23024 5.24472 5.30365 5.37918 5.38284 5.44502 5.55188 5.64996 5.80293 5.82346 5.96649 6.20108 6.23412 6.28760 6.65326 7.17769 7.24875 7.60495 8.82854 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.034766 B = 0.001850 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.188198 B =15132.217135 C =15630.633150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.089 3.911 3 H 0.123 0.877 4 C 0.026 3.974 5 N -0.488 5.488 6 C 0.085 3.915 7 C -0.145 4.145 8 C -0.116 4.116 9 C 0.131 3.869 10 N -0.673 5.673 11 C 0.690 3.310 12 O -0.628 6.628 13 N -0.716 5.716 14 C 0.285 3.715 15 C -0.555 4.555 16 H 0.085 0.915 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.987 3.013 20 H -0.253 1.253 21 H -0.279 1.279 22 H -0.279 1.279 23 C -0.119 4.119 24 C -0.122 4.122 25 C 0.020 3.980 26 C 0.083 3.917 27 H 0.067 0.933 28 C -0.141 4.141 29 O -0.390 6.390 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.422 0.578 38 H 0.407 0.593 39 H -0.012 1.012 40 H -0.012 1.012 41 H 0.269 0.731 42 H 0.105 0.895 43 H 0.130 0.870 44 H 0.101 0.899 45 H 0.057 0.943 46 H 0.063 0.937 47 H 0.089 0.911 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.705 7.392 -28.907 30.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.032 3.968 3 H 0.141 0.859 4 C -0.100 4.100 5 N -0.204 5.204 6 C -0.012 4.012 7 C -0.166 4.166 8 C -0.137 4.137 9 C 0.036 3.964 10 N -0.323 5.323 11 C 0.391 3.609 12 O -0.509 6.509 13 N -0.369 5.369 14 C 0.162 3.838 15 C -0.593 4.593 16 H 0.103 0.897 17 C -0.196 4.196 18 N -0.569 5.569 19 Si 0.810 3.190 20 H -0.176 1.176 21 H -0.205 1.205 22 H -0.205 1.205 23 C -0.141 4.141 24 C -0.143 4.143 25 C -0.107 4.107 26 C 0.025 3.975 27 H 0.085 0.915 28 C -0.198 4.198 29 O -0.310 6.310 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.112 0.888 35 H 0.174 0.826 36 H 0.172 0.828 37 H 0.260 0.740 38 H 0.243 0.757 39 H 0.006 0.994 40 H 0.006 0.994 41 H 0.078 0.922 42 H 0.123 0.877 43 H 0.148 0.852 44 H 0.119 0.881 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.108 0.892 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.161 7.942 -28.951 30.646 hybrid contribution 1.002 -0.674 1.641 2.038 sum 7.163 7.268 -27.310 29.154 Atomic orbital electron populations 1.22257 0.95122 1.02871 1.02782 1.22392 0.94706 0.96503 0.83231 0.85945 1.22977 0.99085 0.87246 1.00659 1.59391 1.56948 1.03072 1.00973 1.18955 0.96093 0.96059 0.90117 1.21308 0.98833 0.96975 0.99450 1.20949 1.02660 1.00811 0.89263 1.17741 1.00439 0.92269 0.85975 1.42458 1.21946 1.56535 1.11354 1.16278 0.84042 0.79530 0.81097 1.90870 1.21592 1.54161 1.84253 1.45320 1.19812 1.61427 1.10387 1.18462 0.89070 0.94786 0.81517 1.21628 1.02171 1.39240 0.96221 0.89677 1.26068 0.95612 0.95991 1.01978 1.70145 1.14121 1.46620 1.25983 0.85082 0.78860 0.77640 0.77433 1.17604 1.20503 1.20485 1.21011 0.99566 0.94560 0.98937 1.20647 1.01729 1.01540 0.90383 1.23084 0.99103 0.99811 0.88734 1.22300 0.99202 0.81261 0.94708 0.91467 1.21755 1.01722 1.01190 0.95166 1.88036 1.75833 1.23856 1.43257 0.92244 0.91015 0.91691 0.93399 0.88795 0.82627 0.82785 0.73990 0.75731 0.99377 0.99447 0.92223 0.87681 0.85214 0.88081 0.92450 0.91803 0.89195 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 8.89 71.98 0.64 -1.76 16 2 C 0.09 1.29 3.92 30.62 0.12 1.41 16 3 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 4 C 0.03 0.43 4.82 86.31 0.42 0.85 16 5 N -0.49 -9.06 4.15 -694.12 -2.88 -11.94 16 6 C 0.09 1.92 5.64 38.16 0.22 2.14 16 7 C -0.14 -2.86 8.82 22.39 0.20 -2.66 16 8 C -0.12 -2.52 9.96 22.38 0.22 -2.30 16 9 C 0.13 3.88 6.28 38.09 0.24 4.12 16 10 N -0.67 -20.44 5.36 -317.01 -1.70 -22.14 16 11 C 0.69 29.02 8.30 179.05 1.49 30.51 16 12 O -0.63 -32.46 14.03 -4.00 -0.06 -32.51 16 13 N -0.72 -30.62 5.55 -482.29 -2.68 -33.30 16 14 C 0.28 15.72 5.43 85.63 0.46 16.18 16 15 C -0.55 -30.05 9.28 25.60 0.24 -29.81 16 16 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 17 C 0.00 0.17 5.46 84.65 0.46 0.64 16 18 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 19 Si 0.99 42.14 29.54 68.60 2.03 44.17 16 20 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 21 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 23 C -0.12 -3.95 8.65 22.38 0.19 -3.75 16 24 C -0.12 -3.31 9.20 22.39 0.21 -3.10 16 25 C 0.02 0.28 3.62 86.32 0.31 0.60 16 26 C 0.08 1.14 3.02 30.63 0.09 1.23 16 27 H 0.07 0.97 6.49 -2.39 -0.02 0.96 16 28 C -0.14 -1.33 9.57 71.98 0.69 -0.64 16 29 O -0.39 -6.54 10.28 -148.98 -1.53 -8.07 16 30 H 0.06 0.98 6.13 -2.39 -0.01 0.96 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 1.51 6.86 -2.38 -0.02 1.49 16 35 H 0.16 2.14 5.81 -2.91 -0.02 2.12 16 36 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.42 9.13 8.83 -92.71 -0.82 8.31 16 38 H 0.41 14.08 8.34 -92.71 -0.77 13.31 16 39 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 40 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 41 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 42 H 0.11 4.20 6.41 -2.91 -0.02 4.18 16 43 H 0.13 3.22 7.20 -2.91 -0.02 3.19 16 44 H 0.10 1.27 7.21 -2.39 -0.02 1.25 16 45 H 0.06 0.81 7.55 -2.39 -0.02 0.79 16 46 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 48 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 Total: -1.00 -74.87 382.43 -0.94 -75.81 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: -0.60 Total: 30.17 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 6.19 Total: 13.62 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -6.97 Total: -123.19 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -1.59 Total: -40.58 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -74.87 -0.94 -75.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785751167.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.792 kcal (2) G-P(sol) polarization free energy of solvation -74.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds