Wall clock time and date at job start Tue Mar 31 2020 18:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46833 * 2 1 4 4 N 1.46493 * 109.47513 * 240.00063 * 2 1 3 5 5 C 1.34783 * 119.99843 * 84.99470 * 4 2 1 6 6 O 1.21584 * 120.00214 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99617 * 179.97438 * 5 4 2 8 8 C 1.46505 * 119.99885 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47375 * 180.02562 * 8 7 5 10 10 H 1.08000 * 119.99835 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00140 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99792 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99986 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46944 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46947 * 119.99884 * 13 11 9 16 16 H 1.48497 * 109.46731 * 240.00115 * 13 11 9 17 17 C 1.50699 * 109.47300 * 119.99481 * 2 1 3 18 18 C 1.38281 * 119.93134 * 260.00279 * 17 2 1 19 19 C 1.38098 * 120.07695 * 179.97438 * 18 17 2 20 20 C 1.38907 * 119.92589 * 0.02562 * 19 18 17 21 21 N 1.39681 * 120.07816 * 179.97438 * 20 19 18 22 22 C 1.47024 * 110.99173 * 56.32196 * 21 20 19 23 23 C 1.53103 * 109.24985 * 182.35279 * 22 21 20 24 24 O 1.43012 * 109.29295 * 303.21723 * 23 22 21 25 25 C 1.43011 * 113.74271 * 58.65008 * 24 23 22 26 26 C 1.47018 * 111.00027 * 179.97438 * 21 20 19 27 27 C 1.38914 * 119.84933 * 0.25516 * 20 19 18 28 28 C 1.38105 * 119.92373 * 359.48797 * 27 20 19 29 29 H 1.08998 * 109.47099 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47493 * 300.00062 * 1 2 3 31 31 H 1.09002 * 109.47229 * 59.99890 * 1 2 3 32 32 H 0.97002 * 120.00340 * 265.00040 * 4 2 1 33 33 H 0.97002 * 120.00566 * 0.02562 * 7 5 4 34 34 H 1.09000 * 109.47053 * 300.00452 * 8 7 5 35 35 H 1.09000 * 109.46857 * 59.99990 * 8 7 5 36 36 H 0.96998 * 119.99709 * 179.97438 * 12 11 9 37 37 H 1.08003 * 119.96116 * 359.96052 * 18 17 2 38 38 H 1.07999 * 120.03927 * 180.02562 * 19 18 17 39 39 H 1.08998 * 109.47369 * 62.44004 * 22 21 20 40 40 H 1.08998 * 109.54483 * 302.30212 * 22 21 20 41 41 H 1.09002 * 109.50635 * 183.25881 * 23 22 21 42 42 H 1.09003 * 109.50698 * 63.17493 * 23 22 21 43 43 H 1.08997 * 109.50806 * 61.26171 * 25 24 23 44 44 H 1.08997 * 109.50924 * 181.35636 * 25 24 23 45 45 H 1.08994 * 109.50209 * 57.67329 * 26 21 20 46 46 H 1.08997 * 109.50514 * 297.54143 * 26 21 20 47 47 H 1.08010 * 120.03742 * 179.73017 * 27 20 19 48 48 H 1.08003 * 119.96244 * 180.25591 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 6 2.1470 -0.0181 -2.3571 6 8 1.8582 1.1616 -2.4116 7 7 2.5969 -0.6534 -3.4574 8 6 2.7373 0.0776 -4.7193 9 6 3.2538 -0.8544 -5.7850 10 1 3.4567 -1.8880 -5.5463 11 6 3.4662 -0.3879 -7.0649 12 7 3.2186 0.8706 -7.3556 13 14 4.1058 -1.5434 -8.3860 14 1 4.3023 -2.8967 -7.8071 15 1 3.1224 -1.6185 -9.4962 16 1 5.4004 -1.0336 -8.9049 17 6 2.0323 -0.7103 1.2305 18 6 2.4585 0.0213 2.3238 19 6 2.9189 -0.6265 3.4532 20 6 2.9542 -2.0146 3.4899 21 7 3.4198 -2.6731 4.6304 22 6 2.6594 -2.2660 5.8210 23 6 3.2392 -2.9649 7.0537 24 8 3.2122 -4.3803 6.8507 25 6 3.9440 -4.8111 5.7001 26 6 3.3702 -4.1318 4.4537 27 6 2.5309 -2.7464 2.3877 28 6 2.0666 -2.0923 1.2635 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 2.2491 -1.6317 -1.1526 33 1 2.8277 -1.5945 -3.4139 34 1 1.7667 0.4715 -5.0209 35 1 3.4383 0.9015 -4.5858 36 1 3.3684 1.1989 -8.2559 37 1 2.4314 1.1006 2.2944 38 1 3.2512 -0.0545 4.3069 39 1 1.6142 -2.5502 5.6994 40 1 2.7312 -1.1858 5.9477 41 1 2.6428 -2.7113 7.9301 42 1 4.2680 -2.6387 7.2068 43 1 4.9933 -4.5385 5.8130 44 1 3.8579 -5.8928 5.5979 45 1 3.9606 -4.4130 3.5818 46 1 2.3364 -4.4461 4.3109 47 1 2.5611 -3.8259 2.4114 48 1 1.7334 -2.6608 0.4077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787357405.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:26 Heat of formation + Delta-G solvation = -39.856343 kcal Electronic energy + Delta-G solvation = -27820.413633 eV Core-core repulsion = 23875.376171 eV Total energy + Delta-G solvation = -3945.037462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93889 -39.63853 -38.71396 -36.60810 -34.71092 -33.94777 -32.37330 -32.20498 -31.00261 -30.80240 -29.24979 -26.95336 -26.81946 -25.06736 -23.54297 -22.62008 -22.42531 -21.31299 -20.35800 -19.91480 -18.38060 -17.91768 -16.70635 -16.55917 -16.04660 -15.82532 -15.63649 -15.53640 -15.21464 -14.93903 -14.77123 -14.58859 -14.24411 -14.08006 -13.77079 -13.49874 -13.37600 -13.03120 -12.76181 -12.59350 -12.43535 -12.16923 -11.95576 -11.94432 -11.82089 -11.59725 -11.25231 -11.11609 -10.92221 -10.90113 -10.82881 -10.43352 -10.28554 -9.82998 -9.37737 -9.33007 -9.16942 -8.77406 -8.67715 -8.11307 -7.73367 -6.13670 -4.19925 1.06586 1.17452 3.08019 3.25058 3.30217 3.33098 3.34648 3.40291 3.62037 3.99138 4.28121 4.34500 4.35223 4.46245 4.58992 4.60496 4.69339 4.73450 4.74486 4.97103 5.08159 5.10866 5.16366 5.20361 5.21707 5.22458 5.24816 5.38651 5.39701 5.46129 5.52621 5.75024 5.75531 5.87748 6.01387 6.05790 6.30866 6.40901 6.44336 6.53262 6.60004 6.92244 6.94174 7.15617 7.54861 7.58270 7.60078 7.93520 8.07006 8.79250 8.97533 9.36422 9.50945 10.96635 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020168 B = 0.001945 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.988050 B =14389.499986 C =15391.248088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.204 3.796 3 H 0.094 0.906 4 N -0.752 5.752 5 C 0.694 3.306 6 O -0.601 6.601 7 N -0.730 5.730 8 C 0.267 3.733 9 C -0.541 4.541 10 H 0.063 0.937 11 C 0.062 3.938 12 N -0.885 5.885 13 Si 0.904 3.096 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.105 4.105 18 C -0.083 4.083 19 C -0.134 4.134 20 C 0.102 3.898 21 N -0.488 5.488 22 C 0.020 3.980 23 C 0.062 3.938 24 O -0.385 6.385 25 C 0.062 3.938 26 C 0.012 3.988 27 C -0.165 4.165 28 C -0.085 4.085 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.389 0.611 33 H 0.386 0.614 34 H 0.025 0.975 35 H 0.024 0.976 36 H 0.265 0.735 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.053 0.947 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.056 0.944 47 H 0.126 0.874 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.487 -10.113 29.557 31.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.099 3.901 3 H 0.112 0.888 4 N -0.410 5.410 5 C 0.394 3.606 6 O -0.480 6.480 7 N -0.382 5.382 8 C 0.146 3.854 9 C -0.579 4.579 10 H 0.081 0.919 11 C -0.141 4.141 12 N -0.523 5.523 13 Si 0.731 3.269 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.106 4.106 18 C -0.102 4.102 19 C -0.154 4.154 20 C 0.005 3.995 21 N -0.204 5.204 22 C -0.106 4.106 23 C -0.015 4.015 24 O -0.303 6.303 25 C -0.015 4.015 26 C -0.115 4.115 27 C -0.185 4.185 28 C -0.104 4.104 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.223 0.777 33 H 0.218 0.782 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.071 0.929 40 H 0.112 0.888 41 H 0.120 0.880 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.121 0.879 45 H 0.113 0.887 46 H 0.074 0.926 47 H 0.144 0.856 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.329 -8.882 29.560 30.894 hybrid contribution 0.046 -1.456 -1.165 1.865 sum -1.284 -10.338 28.395 30.246 Atomic orbital electron populations 1.22186 0.94854 1.01984 1.02543 1.19465 0.93588 0.96472 0.80621 0.88812 1.45328 1.73331 1.13282 1.09015 1.16139 0.78865 0.85271 0.80323 1.90862 1.57887 1.14550 1.84674 1.45719 1.68574 1.13575 1.10312 1.18977 0.97215 0.91989 0.77252 1.21271 1.45593 0.96540 0.94511 0.91926 1.24951 0.95305 0.95323 0.98519 1.69992 1.47496 1.14079 1.20707 0.86361 0.78534 0.80635 0.81359 1.19691 1.20833 1.20820 1.19997 1.00898 0.93821 0.95887 1.20896 0.96979 1.00039 0.92260 1.20709 1.03146 0.92316 0.99261 1.18888 0.96154 0.93168 0.91245 1.59337 1.51918 1.06536 1.02612 1.22948 0.96188 1.01716 0.89725 1.22721 1.01415 0.80778 0.96607 1.88008 1.73905 1.22295 1.46085 1.22725 0.95614 0.99313 0.83831 1.22986 1.01606 0.86697 1.00187 1.21230 1.02803 0.99867 0.94626 1.20805 0.98223 0.93845 0.97558 0.92718 0.92035 0.91317 0.77678 0.78242 0.95746 0.95753 0.92545 0.85386 0.85745 0.92869 0.88825 0.87979 0.91986 0.91993 0.87938 0.88696 0.92575 0.85605 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.46 37.16 0.35 -1.61 16 2 C 0.20 2.75 2.77 -69.09 -0.19 2.56 16 3 H 0.09 1.44 7.43 -51.93 -0.39 1.05 16 4 N -0.75 -11.49 5.03 -59.82 -0.30 -11.79 16 5 C 0.69 14.49 8.53 -86.91 -0.74 13.75 16 6 O -0.60 -15.04 16.01 5.29 0.08 -14.96 16 7 N -0.73 -15.87 5.55 -66.41 -0.37 -16.23 16 8 C 0.27 7.23 5.43 -5.19 -0.03 7.20 16 9 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 10 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 13 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 C -0.10 -1.17 4.96 -104.59 -0.52 -1.68 16 18 C -0.08 -0.84 9.66 -39.62 -0.38 -1.22 16 19 C -0.13 -1.25 9.20 -39.38 -0.36 -1.61 16 20 C 0.10 0.96 5.64 -83.78 -0.47 0.49 16 21 N -0.49 -3.97 4.77 -170.79 -0.82 -4.79 16 22 C 0.02 0.13 5.41 -3.70 -0.02 0.11 16 23 C 0.06 0.37 7.01 37.21 0.26 0.63 16 24 O -0.38 -3.05 10.83 -35.23 -0.38 -3.43 16 25 C 0.06 0.39 7.01 37.21 0.26 0.65 16 26 C 0.01 0.09 4.33 -3.71 -0.02 0.07 16 27 C -0.16 -1.53 8.82 -39.38 -0.35 -1.88 16 28 C -0.09 -0.86 9.04 -39.61 -0.36 -1.22 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.39 4.90 6.88 -40.82 -0.28 4.62 16 33 H 0.39 7.18 8.34 -40.82 -0.34 6.84 16 34 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.13 1.14 8.03 -52.48 -0.42 0.72 16 38 H 0.12 0.96 7.20 -52.49 -0.38 0.58 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.53 6.86 -51.93 -0.36 0.17 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.60 7.21 -51.93 -0.37 0.22 16 46 H 0.06 0.39 7.55 -51.93 -0.39 0.00 16 47 H 0.13 0.96 5.81 -52.48 -0.31 0.65 16 48 H 0.12 1.10 6.91 -52.48 -0.36 0.73 16 LS Contribution 387.88 15.07 5.85 5.85 Total: -1.00 -34.30 387.88 -10.56 -44.86 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -7.36 Total: 7.39 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -2.98 Total: 2.71 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.75 Total: -58.41 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.30 Total: -18.39 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.30 -10.56 -44.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787357405.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.001 kcal (2) G-P(sol) polarization free energy of solvation -34.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds