Wall clock time and date at job start Tue Mar 31 2020 18:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46917 * 2 1 4 4 N 1.46895 * 109.47546 * 120.00213 * 2 1 3 5 5 C 1.46895 * 111.00089 * 275.00152 * 4 2 1 6 6 C 1.53001 * 109.47201 * 179.97438 * 5 4 2 7 7 O 1.42904 * 109.46806 * 64.99909 * 6 5 4 8 8 C 1.42902 * 113.99815 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47065 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99858 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99640 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00494 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99411 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47456 * 59.99948 * 13 11 9 15 15 H 1.48502 * 109.46887 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47171 * 299.99698 * 13 11 9 17 17 C 1.50698 * 109.46948 * 240.00794 * 2 1 3 18 18 C 1.38283 * 119.92696 * 279.72158 * 17 2 1 19 19 C 1.38119 * 120.06898 * 179.76756 * 18 17 2 20 20 C 1.38866 * 119.92882 * 0.48384 * 19 18 17 21 21 N 1.39939 * 120.06926 * 179.78839 * 20 19 18 22 22 C 1.47049 * 125.41300 * 174.22127 * 21 20 19 23 23 C 1.54104 * 103.86806 * 180.02562 * 22 21 20 24 24 N 1.47051 * 103.85851 * 0.02562 * 23 22 21 25 25 C 1.33950 * 125.41105 * 353.91805 * 21 20 19 26 26 O 1.21588 * 123.04185 * 0.02562 * 25 21 20 27 27 C 1.38861 * 119.86120 * 359.76696 * 20 19 18 28 28 C 1.38116 * 119.93009 * 0.02562 * 27 20 19 29 29 H 1.09001 * 109.46917 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46818 * 299.99538 * 1 2 3 31 31 H 1.08998 * 109.47221 * 59.99644 * 1 2 3 32 32 H 1.00901 * 110.99909 * 38.95364 * 4 2 1 33 33 H 1.08998 * 109.47254 * 299.99697 * 5 4 2 34 34 H 1.09002 * 109.47253 * 60.00083 * 5 4 2 35 35 H 1.09001 * 109.47313 * 185.00000 * 6 5 4 36 36 H 1.08995 * 109.47154 * 305.00108 * 6 5 4 37 37 H 1.09008 * 109.47118 * 299.99746 * 8 7 6 38 38 H 1.09002 * 109.47288 * 59.99921 * 8 7 6 39 39 H 0.96998 * 120.00208 * 180.02562 * 12 11 9 40 40 H 1.08001 * 119.96222 * 359.97438 * 18 17 2 41 41 H 1.08005 * 120.03387 * 180.25530 * 19 18 17 42 42 H 1.09007 * 110.54856 * 298.59713 * 22 21 20 43 43 H 1.08999 * 110.55008 * 61.26310 * 22 21 20 44 44 H 1.09000 * 110.54663 * 118.59010 * 23 22 21 45 45 H 1.08993 * 110.54876 * 241.40797 * 23 22 21 46 46 H 0.97001 * 125.41338 * 179.97438 * 24 23 22 47 47 H 1.08003 * 120.03805 * 179.97438 * 27 20 19 48 48 H 1.07999 * 119.96643 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 2.0826 0.2225 2.3468 6 6 2.5953 -0.5333 3.5743 7 8 3.9436 -0.9497 3.3485 8 6 4.5203 -1.6690 4.4403 9 6 5.9353 -2.0561 4.0953 10 1 6.3523 -1.7806 3.1379 11 6 6.6971 -2.7627 5.0016 12 7 6.1892 -3.0986 6.1672 13 14 8.4513 -3.2418 4.5741 14 1 9.2492 -2.0170 4.3125 15 1 9.0506 -3.9895 5.7086 16 1 8.4488 -4.0994 3.3617 17 6 2.0323 -0.7102 -1.2306 18 6 2.0715 -2.0922 -1.2618 19 6 2.5268 -2.7462 -2.3899 20 6 2.9549 -2.0144 -3.4897 21 7 3.4210 -2.6740 -4.6325 22 6 3.7876 -2.0258 -5.9005 23 6 4.2252 -3.1972 -6.8011 24 7 4.0580 -4.3812 -5.9451 25 6 3.6094 -3.9955 -4.7433 26 8 3.3877 -4.7751 -3.8370 27 6 2.9193 -0.6267 -3.4532 28 6 2.4588 0.0213 -2.3237 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.4497 -1.4980 1.4099 33 1 2.7590 1.0461 2.1182 34 1 1.0872 0.6161 2.5525 35 1 2.5580 0.1207 4.4455 36 1 1.9694 -1.4082 3.7499 37 1 4.5230 -1.0388 5.3297 38 1 3.9342 -2.5676 4.6334 39 1 6.7253 -3.5954 6.8049 40 1 1.7425 -2.6606 -0.4045 41 1 2.5532 -3.8256 -2.4153 42 1 2.9272 -1.5134 -6.3311 43 1 4.6110 -1.3278 -5.7494 44 1 3.5821 -3.2661 -7.6785 45 1 5.2678 -3.0831 -7.0976 46 1 4.2472 -5.2957 -6.2075 47 1 3.2520 -0.0547 -4.3068 48 1 2.4312 1.1006 -2.2946 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829758297.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:08 Heat of formation + Delta-G solvation = -26.315572 kcal Electronic energy + Delta-G solvation = -27919.730366 eV Core-core repulsion = 23975.280076 eV Total energy + Delta-G solvation = -3944.450290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.71570 -39.33423 -37.30175 -36.80229 -36.07811 -34.26681 -32.66360 -31.41425 -30.89744 -29.56327 -28.50894 -27.67193 -26.32018 -24.27961 -23.83999 -22.26140 -22.17996 -21.56336 -21.05879 -20.12274 -18.29518 -17.08682 -16.99977 -16.57011 -16.15079 -15.73841 -15.57407 -15.08372 -14.70586 -14.63913 -14.28343 -14.24171 -14.18364 -13.89419 -13.73590 -13.53553 -13.27534 -13.12698 -13.06332 -12.75244 -12.56594 -12.31890 -12.10362 -11.83007 -11.61148 -11.20357 -11.05998 -10.98395 -10.75193 -10.65443 -10.38710 -10.21704 -9.99996 -9.89212 -9.59237 -8.99629 -8.82922 -8.70102 -8.12753 -8.02859 -7.80648 -6.00866 -4.01291 1.36591 1.51378 2.11537 2.83622 3.40487 3.41919 3.42042 3.47345 3.83735 3.86153 4.34849 4.39161 4.44757 4.48077 4.81278 4.85706 4.91283 4.95738 4.99735 5.14422 5.16106 5.19819 5.28122 5.35605 5.53403 5.55388 5.60371 5.61876 5.70279 5.75009 5.86929 6.01532 6.09228 6.14794 6.17945 6.37891 6.38783 6.42125 6.56196 6.70461 6.78518 7.10711 7.19805 7.20460 7.30926 7.54283 7.62302 7.91393 8.20397 8.27753 8.72983 9.13525 9.63205 11.10866 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009042 B = 0.002778 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3096.039064 B =10076.775324 C =12469.575133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.124 3.876 3 H 0.084 0.916 4 N -0.668 5.668 5 C 0.066 3.934 6 C 0.065 3.935 7 O -0.379 6.379 8 C 0.194 3.806 9 C -0.509 4.509 10 H 0.066 0.934 11 C 0.055 3.945 12 N -0.902 5.902 13 Si 0.907 3.093 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.086 4.086 18 C -0.062 4.062 19 C -0.152 4.152 20 C 0.178 3.822 21 N -0.569 5.569 22 C 0.085 3.915 23 C 0.093 3.907 24 N -0.739 5.739 25 C 0.698 3.302 26 O -0.562 6.562 27 C -0.161 4.161 28 C -0.089 4.089 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.340 0.660 33 H 0.078 0.922 34 H 0.034 0.966 35 H 0.039 0.961 36 H 0.034 0.966 37 H 0.002 0.998 38 H 0.003 0.997 39 H 0.263 0.737 40 H 0.127 0.873 41 H 0.155 0.845 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.433 0.567 47 H 0.120 0.880 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.401 6.064 -27.808 30.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.014 3.986 3 H 0.102 0.898 4 N -0.299 5.299 5 C -0.063 4.063 6 C -0.014 4.014 7 O -0.298 6.298 8 C 0.120 3.880 9 C -0.548 4.548 10 H 0.084 0.916 11 C -0.146 4.146 12 N -0.541 5.541 13 Si 0.734 3.266 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.088 4.088 18 C -0.081 4.081 19 C -0.172 4.172 20 C 0.085 3.915 21 N -0.297 5.297 22 C -0.038 4.038 23 C -0.032 4.032 24 N -0.402 5.402 25 C 0.398 3.602 26 O -0.438 6.438 27 C -0.182 4.182 28 C -0.108 4.108 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.159 0.841 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.019 0.981 38 H 0.021 0.979 39 H 0.073 0.927 40 H 0.144 0.856 41 H 0.172 0.828 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.275 0.725 47 H 0.138 0.862 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.714 5.730 -27.435 30.005 hybrid contribution 0.061 -0.562 0.109 0.576 sum -10.653 5.168 -27.326 29.781 Atomic orbital electron populations 1.22513 0.96769 1.02377 1.02005 1.20407 0.92077 0.97345 0.88738 0.89792 1.60420 1.57184 1.09180 1.03075 1.22003 0.98213 0.95725 0.90319 1.22230 0.87236 0.96820 0.95080 1.87972 1.23543 1.75155 1.43167 1.20169 0.93368 0.89995 0.84489 1.21041 0.96632 1.34664 1.02416 0.91569 1.24938 0.99024 0.95806 0.94798 1.69955 1.37318 1.39679 1.07167 0.86414 0.83660 0.78672 0.77842 1.20072 1.21249 1.19979 1.19746 1.00460 0.93836 0.94726 1.20835 0.96930 0.93723 0.96653 1.21602 1.00974 1.02485 0.92144 1.17391 0.97905 0.91055 0.85198 1.44469 1.65928 1.06530 1.12728 1.22545 1.01981 0.96322 0.82932 1.22382 1.02787 0.83861 0.94206 1.45097 1.71977 1.10095 1.13026 1.15871 0.78547 0.82346 0.83401 1.90909 1.57499 1.54807 1.40613 1.20512 1.06328 0.91463 0.99849 1.20673 0.98382 0.99375 0.92361 0.92232 0.92485 0.92077 0.84133 0.90405 0.94832 0.94270 0.94832 0.98069 0.97921 0.92740 0.85559 0.82788 0.89181 0.89111 0.89533 0.89503 0.72505 0.86191 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 9.14 37.16 0.34 -1.39 16 2 C 0.12 1.51 2.79 -68.87 -0.19 1.32 16 3 H 0.08 0.98 7.66 -51.93 -0.40 0.58 16 4 N -0.67 -10.03 5.64 -107.96 -0.61 -10.64 16 5 C 0.07 1.00 5.87 -3.83 -0.02 0.98 16 6 C 0.06 1.23 6.22 37.16 0.23 1.46 16 7 O -0.38 -9.60 10.27 -35.23 -0.36 -9.96 16 8 C 0.19 5.57 5.69 36.01 0.20 5.78 16 9 C -0.51 -15.74 9.43 -34.44 -0.32 -16.06 16 10 H 0.07 2.05 7.81 -52.49 -0.41 1.64 16 11 C 0.05 1.65 5.46 -17.82 -0.10 1.56 16 12 N -0.90 -27.95 13.29 55.43 0.74 -27.21 16 13 Si 0.91 22.88 29.54 -169.99 -5.02 17.86 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 17 C -0.09 -1.12 4.96 -104.59 -0.52 -1.64 16 18 C -0.06 -0.90 9.32 -39.61 -0.37 -1.27 16 19 C -0.15 -2.29 9.29 -39.39 -0.37 -2.65 16 20 C 0.18 2.31 6.62 -83.69 -0.55 1.75 16 21 N -0.57 -6.27 3.16 -118.25 -0.37 -6.65 16 22 C 0.09 0.48 6.49 -3.17 -0.02 0.46 16 23 C 0.09 0.36 8.06 -3.16 -0.03 0.33 16 24 N -0.74 -5.65 6.37 -64.70 -0.41 -6.06 16 25 C 0.70 8.74 8.52 -88.39 -0.75 7.99 16 26 O -0.56 -9.49 14.76 5.29 0.08 -9.41 16 27 C -0.16 -1.75 9.49 -39.40 -0.37 -2.13 16 28 C -0.09 -1.01 9.66 -39.61 -0.38 -1.39 16 29 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.06 0.52 7.45 -51.93 -0.39 0.14 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.34 4.83 7.81 -39.29 -0.31 4.53 16 33 H 0.08 1.22 8.06 -51.93 -0.42 0.80 16 34 H 0.03 0.41 7.44 -51.93 -0.39 0.02 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.00 0.04 8.14 -51.92 -0.42 -0.38 16 38 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.13 1.79 7.23 -52.49 -0.38 1.41 16 41 H 0.15 2.60 5.29 -52.48 -0.28 2.32 16 42 H 0.09 0.34 8.14 -51.92 -0.42 -0.08 16 43 H 0.09 0.40 8.11 -51.93 -0.42 -0.02 16 44 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 45 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 46 H 0.43 2.53 8.96 -40.82 -0.37 2.16 16 47 H 0.12 0.95 7.29 -52.48 -0.38 0.57 16 48 H 0.12 1.11 8.03 -52.49 -0.42 0.69 16 LS Contribution 394.06 15.07 5.94 5.94 Total: -1.00 -38.18 394.06 -10.74 -48.92 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -7.49 Total: 2.12 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -3.22 Total: -4.91 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.66 Total: -50.56 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.28 Total: -19.37 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.18 -10.74 -48.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829758297.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.607 kcal (2) G-P(sol) polarization free energy of solvation -38.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds