Wall clock time and date at job start Tue Mar 31 2020 18:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46917 * 2 1 4 4 N 1.46895 * 109.47546 * 120.00213 * 2 1 3 5 5 C 1.46895 * 111.00089 * 275.00152 * 4 2 1 6 6 C 1.53001 * 109.47201 * 179.97438 * 5 4 2 7 7 O 1.42904 * 109.46806 * 64.99909 * 6 5 4 8 8 C 1.42902 * 113.99815 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47065 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99858 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99640 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00494 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99411 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47456 * 59.99948 * 13 11 9 15 15 H 1.48502 * 109.46887 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47171 * 299.99698 * 13 11 9 17 17 C 1.50698 * 109.46948 * 240.00794 * 2 1 3 18 18 C 1.38283 * 119.92696 * 279.72158 * 17 2 1 19 19 C 1.38119 * 120.06898 * 179.76756 * 18 17 2 20 20 C 1.38866 * 119.92882 * 0.48384 * 19 18 17 21 21 N 1.39939 * 120.06926 * 179.78839 * 20 19 18 22 22 C 1.47049 * 125.41300 * 174.22127 * 21 20 19 23 23 C 1.54104 * 103.86806 * 180.02562 * 22 21 20 24 24 N 1.47051 * 103.85851 * 0.02562 * 23 22 21 25 25 C 1.33950 * 125.41105 * 353.91805 * 21 20 19 26 26 O 1.21588 * 123.04185 * 0.02562 * 25 21 20 27 27 C 1.38861 * 119.86120 * 359.76696 * 20 19 18 28 28 C 1.38116 * 119.93009 * 0.02562 * 27 20 19 29 29 H 1.09001 * 109.46917 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46818 * 299.99538 * 1 2 3 31 31 H 1.08998 * 109.47221 * 59.99644 * 1 2 3 32 32 H 1.00901 * 110.99909 * 38.95364 * 4 2 1 33 33 H 1.08998 * 109.47254 * 299.99697 * 5 4 2 34 34 H 1.09002 * 109.47253 * 60.00083 * 5 4 2 35 35 H 1.09001 * 109.47313 * 185.00000 * 6 5 4 36 36 H 1.08995 * 109.47154 * 305.00108 * 6 5 4 37 37 H 1.09008 * 109.47118 * 299.99746 * 8 7 6 38 38 H 1.09002 * 109.47288 * 59.99921 * 8 7 6 39 39 H 0.96998 * 120.00208 * 180.02562 * 12 11 9 40 40 H 1.08001 * 119.96222 * 359.97438 * 18 17 2 41 41 H 1.08005 * 120.03387 * 180.25530 * 19 18 17 42 42 H 1.09007 * 110.54856 * 298.59713 * 22 21 20 43 43 H 1.08999 * 110.55008 * 61.26310 * 22 21 20 44 44 H 1.09000 * 110.54663 * 118.59010 * 23 22 21 45 45 H 1.08993 * 110.54876 * 241.40797 * 23 22 21 46 46 H 0.97001 * 125.41338 * 179.97438 * 24 23 22 47 47 H 1.08003 * 120.03805 * 179.97438 * 27 20 19 48 48 H 1.07999 * 119.96643 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 2.0826 0.2225 2.3468 6 6 2.5953 -0.5333 3.5743 7 8 3.9436 -0.9497 3.3485 8 6 4.5203 -1.6690 4.4403 9 6 5.9353 -2.0561 4.0953 10 1 6.3523 -1.7806 3.1379 11 6 6.6971 -2.7627 5.0016 12 7 6.1892 -3.0986 6.1672 13 14 8.4513 -3.2418 4.5741 14 1 9.2492 -2.0170 4.3125 15 1 9.0506 -3.9895 5.7086 16 1 8.4488 -4.0994 3.3617 17 6 2.0323 -0.7102 -1.2306 18 6 2.0715 -2.0922 -1.2618 19 6 2.5268 -2.7462 -2.3899 20 6 2.9549 -2.0144 -3.4897 21 7 3.4210 -2.6740 -4.6325 22 6 3.7876 -2.0258 -5.9005 23 6 4.2252 -3.1972 -6.8011 24 7 4.0580 -4.3812 -5.9451 25 6 3.6094 -3.9955 -4.7433 26 8 3.3877 -4.7751 -3.8370 27 6 2.9193 -0.6267 -3.4532 28 6 2.4588 0.0213 -2.3237 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.4497 -1.4980 1.4099 33 1 2.7590 1.0461 2.1182 34 1 1.0872 0.6161 2.5525 35 1 2.5580 0.1207 4.4455 36 1 1.9694 -1.4082 3.7499 37 1 4.5230 -1.0388 5.3297 38 1 3.9342 -2.5676 4.6334 39 1 6.7253 -3.5954 6.8049 40 1 1.7425 -2.6606 -0.4045 41 1 2.5532 -3.8256 -2.4153 42 1 2.9272 -1.5134 -6.3311 43 1 4.6110 -1.3278 -5.7494 44 1 3.5821 -3.2661 -7.6785 45 1 5.2678 -3.0831 -7.0976 46 1 4.2472 -5.2957 -6.2075 47 1 3.2520 -0.0547 -4.3068 48 1 2.4312 1.1006 -2.2946 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829758297.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:06 Heat of formation + Delta-G solvation = -54.879571 kcal Electronic energy + Delta-G solvation = -27920.968994 eV Core-core repulsion = 23975.280076 eV Total energy + Delta-G solvation = -3945.688918 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.48293 -40.27899 -38.80461 -37.74708 -37.43166 -35.23780 -34.81120 -32.59520 -31.86055 -30.27151 -29.68757 -29.10915 -27.96918 -25.05026 -24.68865 -24.44519 -23.10081 -22.78906 -21.98884 -21.04070 -19.07582 -18.65131 -17.79577 -17.69778 -17.56202 -17.30602 -16.86131 -16.46629 -16.14945 -15.74548 -15.48014 -15.24409 -15.02577 -14.91660 -14.86846 -14.83677 -14.31416 -14.17490 -14.01539 -13.84931 -13.67598 -13.27202 -13.12129 -13.08144 -12.93252 -12.77398 -12.67010 -12.51688 -12.28430 -12.03560 -11.99038 -11.61853 -11.27225 -11.11967 -11.00607 -10.85800 -10.20747 -10.17215 -9.81377 -9.19817 -8.69640 -8.32393 -6.44020 0.39543 0.53473 1.37071 1.39632 1.42780 1.50896 1.94469 2.34374 2.89002 2.89545 3.00870 3.24018 3.33492 3.45407 3.77211 3.93144 4.09423 4.11876 4.17719 4.25350 4.30286 4.40530 4.43076 4.51596 4.57166 4.58276 4.65794 4.67417 4.75026 4.80675 4.86245 4.89008 4.93850 5.00440 5.03569 5.19362 5.21137 5.27320 5.43837 5.51985 5.55068 5.65601 5.74083 5.97913 6.06388 6.17298 6.26695 6.41042 6.48884 6.58804 6.87891 7.28124 7.36871 8.79842 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009042 B = 0.002778 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3096.039064 B =10076.775324 C =12469.575133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.128 3.872 3 H 0.095 0.905 4 N -0.695 5.695 5 C 0.079 3.921 6 C 0.053 3.947 7 O -0.396 6.396 8 C 0.210 3.790 9 C -0.547 4.547 10 H 0.057 0.943 11 C 0.006 3.994 12 N -0.931 5.931 13 Si 0.981 3.019 14 H -0.263 1.263 15 H -0.271 1.271 16 H -0.271 1.271 17 C -0.098 4.098 18 C -0.081 4.081 19 C -0.184 4.184 20 C 0.168 3.832 21 N -0.575 5.575 22 C 0.075 3.925 23 C 0.093 3.907 24 N -0.729 5.729 25 C 0.680 3.320 26 O -0.622 6.622 27 C -0.149 4.149 28 C -0.086 4.086 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.339 0.661 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.036 0.964 37 H -0.014 1.014 38 H -0.019 1.019 39 H 0.271 0.729 40 H 0.112 0.888 41 H 0.124 0.876 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.117 0.883 45 H 0.111 0.889 46 H 0.439 0.561 47 H 0.159 0.841 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.676 8.481 -30.580 33.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.019 3.981 3 H 0.113 0.887 4 N -0.327 5.327 5 C -0.050 4.050 6 C -0.025 4.025 7 O -0.316 6.316 8 C 0.134 3.866 9 C -0.585 4.585 10 H 0.075 0.925 11 C -0.192 4.192 12 N -0.570 5.570 13 Si 0.804 3.196 14 H -0.187 1.187 15 H -0.196 1.196 16 H -0.196 1.196 17 C -0.100 4.100 18 C -0.100 4.100 19 C -0.205 4.205 20 C 0.074 3.926 21 N -0.301 5.301 22 C -0.046 4.046 23 C -0.030 4.030 24 N -0.390 5.390 25 C 0.381 3.619 26 O -0.503 6.503 27 C -0.170 4.170 28 C -0.105 4.105 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.158 0.842 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.003 0.997 38 H -0.002 1.002 39 H 0.080 0.920 40 H 0.130 0.870 41 H 0.142 0.858 42 H 0.132 0.868 43 H 0.126 0.874 44 H 0.135 0.865 45 H 0.129 0.871 46 H 0.282 0.718 47 H 0.177 0.823 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.997 8.184 -30.280 32.921 hybrid contribution -0.233 -1.298 0.906 1.600 sum -10.230 6.886 -29.374 31.858 Atomic orbital electron populations 1.22415 0.94840 1.02312 1.03188 1.20450 0.93561 0.97131 0.86955 0.88706 1.60368 1.58442 1.09785 1.04059 1.21895 0.99765 0.94757 0.88598 1.22640 0.84295 0.97577 0.97967 1.87923 1.26900 1.74785 1.42002 1.19770 0.92819 0.89082 0.84887 1.21357 0.98108 1.36356 1.02636 0.92487 1.25946 1.03926 0.94983 0.94368 1.70057 1.39295 1.39610 1.08036 0.85272 0.77542 0.78799 0.78026 1.18737 1.19587 1.19580 1.19938 1.00931 0.93124 0.95962 1.20794 0.98132 0.94814 0.96228 1.21489 1.03481 1.01432 0.94051 1.17570 0.97613 0.92079 0.85319 1.44612 1.65250 1.06406 1.13842 1.23025 1.03678 0.97176 0.80671 1.22751 1.05068 0.81258 0.93921 1.45132 1.70254 1.11721 1.11930 1.16342 0.78781 0.82724 0.84095 1.90865 1.60042 1.56448 1.42973 1.20896 1.04795 0.90448 1.00877 1.21091 0.96894 1.00902 0.91637 0.92984 0.91511 0.90543 0.84183 0.90709 0.90963 0.93271 0.94594 0.99657 1.00162 0.92037 0.87039 0.85831 0.86771 0.87368 0.86496 0.87058 0.71750 0.82302 0.82723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 9.14 71.98 0.66 -2.34 16 2 C 0.13 2.95 2.79 44.17 0.12 3.07 16 3 H 0.09 1.97 7.66 -2.39 -0.02 1.95 16 4 N -0.69 -20.87 5.64 -495.46 -2.80 -23.67 16 5 C 0.08 2.29 5.87 86.30 0.51 2.79 16 6 C 0.05 2.02 6.22 71.98 0.45 2.47 16 7 O -0.40 -20.71 10.27 -148.98 -1.53 -22.25 16 8 C 0.21 12.53 5.69 71.24 0.41 12.94 16 9 C -0.55 -34.75 9.43 25.60 0.24 -34.51 16 10 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 11 C 0.01 0.37 5.46 84.66 0.46 0.83 16 12 N -0.93 -58.40 13.29 21.45 0.28 -58.12 16 13 Si 0.98 47.04 29.54 68.60 2.03 49.07 16 14 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 16 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 17 C -0.10 -2.51 4.96 -19.84 -0.10 -2.61 16 18 C -0.08 -2.50 9.32 22.25 0.21 -2.29 16 19 C -0.18 -6.03 9.29 22.39 0.21 -5.83 16 20 C 0.17 4.38 6.62 38.15 0.25 4.64 16 21 N -0.57 -12.33 3.16 -646.74 -2.04 -14.37 16 22 C 0.08 0.60 6.49 86.65 0.56 1.16 16 23 C 0.09 0.42 8.06 86.65 0.70 1.11 16 24 N -0.73 -10.49 6.37 -477.35 -3.04 -13.53 16 25 C 0.68 17.65 8.52 179.57 1.53 19.18 16 26 O -0.62 -23.04 14.76 -3.99 -0.06 -23.10 16 27 C -0.15 -2.91 9.49 22.39 0.21 -2.69 16 28 C -0.09 -1.76 9.66 22.25 0.21 -1.55 16 29 H 0.05 1.00 8.13 -2.39 -0.02 0.98 16 30 H 0.07 1.05 7.45 -2.39 -0.02 1.04 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.34 10.00 7.81 -89.69 -0.70 9.30 16 33 H 0.07 2.23 8.06 -2.39 -0.02 2.21 16 34 H 0.07 1.57 7.44 -2.39 -0.02 1.55 16 35 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 37 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 38 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 39 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 40 H 0.11 3.58 7.23 -2.91 -0.02 3.56 16 41 H 0.12 4.78 5.29 -2.91 -0.02 4.77 16 42 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 43 H 0.11 0.51 8.11 -2.39 -0.02 0.49 16 44 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 45 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 46 H 0.44 4.92 8.96 -92.71 -0.83 4.08 16 47 H 0.16 1.78 7.29 -2.91 -0.02 1.75 16 48 H 0.16 2.14 8.03 -2.91 -0.02 2.12 16 Total: -1.00 -88.72 394.06 -1.08 -89.80 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -0.55 Total: 19.78 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 6.63 Total: -3.61 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -7.59 Total: -109.69 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -1.59 Total: -45.34 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -88.72 -1.08 -89.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829758297.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.918 kcal (2) G-P(sol) polarization free energy of solvation -88.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds