Wall clock time and date at job start Tue Mar 31 2020 18:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46871 * 2 1 4 4 N 1.46904 * 109.47005 * 240.00307 * 2 1 3 5 5 C 1.46895 * 110.99886 * 85.00050 * 4 2 1 6 6 C 1.53005 * 109.46941 * 179.97438 * 5 4 2 7 7 O 1.42898 * 109.47010 * 64.99855 * 6 5 4 8 8 C 1.42901 * 113.99983 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47190 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99855 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99990 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99949 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99937 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47146 * 59.99629 * 13 11 9 15 15 H 1.48498 * 109.46885 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47080 * 299.99584 * 13 11 9 17 17 C 1.50702 * 109.47054 * 120.00092 * 2 1 3 18 18 C 1.38275 * 119.92576 * 79.72685 * 17 2 1 19 19 C 1.38123 * 120.06902 * 179.76841 * 18 17 2 20 20 C 1.38874 * 119.92419 * 0.48130 * 19 18 17 21 21 N 1.39945 * 120.06517 * 179.79341 * 20 19 18 22 22 C 1.47050 * 125.40477 * 174.22565 * 21 20 19 23 23 C 1.54105 * 103.86088 * 179.97438 * 22 21 20 24 24 N 1.47054 * 103.86037 * 359.97438 * 23 22 21 25 25 C 1.33945 * 125.41072 * 353.91662 * 21 20 19 26 26 O 1.21583 * 123.04224 * 0.02562 * 25 21 20 27 27 C 1.38863 * 119.86009 * 359.77004 * 20 19 18 28 28 C 1.38112 * 119.93274 * 0.02562 * 27 20 19 29 29 H 1.09004 * 109.47134 * 300.00199 * 1 2 3 30 30 H 1.09006 * 109.46825 * 59.99843 * 1 2 3 31 31 H 1.08998 * 109.47017 * 179.97438 * 1 2 3 32 32 H 1.00896 * 110.99880 * 321.04518 * 4 2 1 33 33 H 1.08998 * 109.47117 * 299.99685 * 5 4 2 34 34 H 1.08998 * 109.47591 * 60.00397 * 5 4 2 35 35 H 1.09001 * 109.47141 * 185.00029 * 6 5 4 36 36 H 1.08999 * 109.46990 * 304.99919 * 6 5 4 37 37 H 1.08999 * 109.46935 * 300.00507 * 8 7 6 38 38 H 1.09002 * 109.46642 * 59.99943 * 8 7 6 39 39 H 0.96995 * 120.00246 * 179.97438 * 12 11 9 40 40 H 1.08000 * 119.96992 * 359.97438 * 18 17 2 41 41 H 1.07993 * 120.03784 * 180.25212 * 19 18 17 42 42 H 1.09004 * 110.54754 * 298.58816 * 22 21 20 43 43 H 1.08999 * 110.55571 * 61.26048 * 22 21 20 44 44 H 1.08999 * 110.54809 * 118.59118 * 23 22 21 45 45 H 1.09004 * 110.55076 * 241.40527 * 23 22 21 46 46 H 0.97010 * 125.40874 * 180.02562 * 24 23 22 47 47 H 1.07998 * 120.03256 * 179.97438 * 27 20 19 48 48 H 1.08001 * 119.96915 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5962 -0.5328 -3.5742 7 8 1.6513 -1.5388 -3.9443 8 6 2.0368 -2.3064 -5.0864 9 6 0.9729 -3.3310 -5.3854 10 1 0.0905 -3.3898 -4.7656 11 6 1.1262 -4.1933 -6.4503 12 7 2.2006 -4.1212 -7.2054 13 14 -0.1928 -5.4628 -6.8215 14 1 -1.4785 -4.7739 -7.0998 15 1 0.2085 -6.2613 -8.0075 16 1 -0.3565 -6.3629 -5.6518 17 6 2.0323 -0.7104 1.2305 18 6 2.0608 -2.0924 1.2658 19 6 2.5251 -2.7466 2.3902 20 6 2.9542 -2.0148 3.4897 21 7 3.4211 -2.6746 4.6321 22 6 4.0128 -2.0231 5.8102 23 6 4.3453 -3.1961 6.7528 24 7 3.9050 -4.3839 6.0058 25 6 3.3947 -3.9993 4.8286 26 8 2.9506 -4.7820 4.0111 27 6 2.9194 -0.6271 3.4530 28 6 2.4580 0.0210 2.3240 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.4496 -1.4978 -1.4101 33 1 1.0871 0.6164 -2.5525 34 1 2.7589 1.0462 -2.1182 35 1 2.7272 0.1647 -4.4016 36 1 3.5520 -1.0009 -3.3389 37 1 2.1559 -1.6454 -5.9449 38 1 2.9811 -2.8113 -4.8828 39 1 2.3086 -4.7281 -7.9543 40 1 1.7227 -2.6610 0.4121 41 1 2.5508 -3.8259 2.4157 42 1 4.9195 -1.4845 5.5345 43 1 3.2945 -1.3480 6.2753 44 1 5.4172 -3.2403 6.9451 45 1 3.7913 -3.1051 7.6871 46 1 3.9706 -5.3001 6.3177 47 1 3.2521 -0.0553 4.3066 48 1 2.4311 1.1003 2.2946 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829758299.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:10 Heat of formation + Delta-G solvation = -30.598881 kcal Electronic energy + Delta-G solvation = -27740.759041 eV Core-core repulsion = 23796.123013 eV Total energy + Delta-G solvation = -3944.636028 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.77701 -39.37205 -37.34945 -36.86522 -36.10605 -34.29520 -32.72201 -31.40678 -30.95312 -29.60831 -28.54014 -27.65675 -26.36479 -24.32137 -23.88775 -22.35901 -22.19210 -21.57467 -20.98758 -20.14699 -18.35228 -17.14661 -17.05307 -16.61581 -16.20426 -15.66858 -15.65328 -15.20165 -14.78371 -14.54363 -14.42279 -14.30270 -14.20905 -13.92444 -13.72684 -13.63157 -13.33876 -13.18432 -13.03801 -12.78651 -12.52374 -12.31354 -11.99318 -11.79146 -11.59769 -11.26889 -11.07194 -10.99817 -10.78483 -10.69461 -10.47314 -10.31025 -10.04878 -9.95617 -9.65229 -9.07569 -8.89358 -8.77679 -8.16584 -8.12404 -7.86035 -6.06638 -4.08321 1.30578 1.44890 2.05465 2.77537 3.35648 3.35977 3.38202 3.42143 3.77934 3.81373 4.33054 4.38294 4.39381 4.42261 4.78749 4.82690 4.90148 4.93026 4.99469 5.08930 5.13377 5.24164 5.29742 5.31460 5.51544 5.55234 5.57782 5.65224 5.68662 5.78159 5.90088 6.09320 6.12919 6.17751 6.25169 6.32823 6.37247 6.42508 6.51297 6.66106 6.74695 7.04978 7.14091 7.16095 7.31644 7.48825 7.69790 7.82915 8.14300 8.19802 8.62388 9.04463 9.56324 11.04835 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012844 B = 0.002224 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.523632 B =12586.798831 C =14071.642337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.124 3.876 3 H 0.081 0.919 4 N -0.680 5.680 5 C 0.067 3.933 6 C 0.061 3.939 7 O -0.399 6.399 8 C 0.198 3.802 9 C -0.514 4.514 10 H 0.065 0.935 11 C 0.056 3.944 12 N -0.898 5.898 13 Si 0.908 3.092 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.086 4.086 18 C -0.065 4.065 19 C -0.152 4.152 20 C 0.176 3.824 21 N -0.569 5.569 22 C 0.085 3.915 23 C 0.093 3.907 24 N -0.739 5.739 25 C 0.697 3.303 26 O -0.562 6.562 27 C -0.161 4.161 28 C -0.091 4.091 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.357 0.643 33 H 0.035 0.965 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.046 0.954 37 H 0.003 0.997 38 H 0.006 0.994 39 H 0.264 0.736 40 H 0.130 0.870 41 H 0.155 0.845 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.433 0.567 47 H 0.120 0.880 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.696 9.790 31.224 33.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.014 3.986 3 H 0.099 0.901 4 N -0.312 5.312 5 C -0.062 4.062 6 C -0.016 4.016 7 O -0.319 6.319 8 C 0.123 3.877 9 C -0.553 4.553 10 H 0.083 0.917 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.735 3.265 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.087 4.087 18 C -0.084 4.084 19 C -0.172 4.172 20 C 0.083 3.917 21 N -0.297 5.297 22 C -0.038 4.038 23 C -0.032 4.032 24 N -0.402 5.402 25 C 0.398 3.602 26 O -0.439 6.439 27 C -0.182 4.182 28 C -0.110 4.110 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.177 0.823 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.021 0.979 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.147 0.853 41 H 0.173 0.827 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.275 0.725 47 H 0.138 0.862 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.033 9.387 30.824 32.612 hybrid contribution -1.055 -0.800 -0.337 1.366 sum 3.978 8.587 30.487 31.922 Atomic orbital electron populations 1.22493 0.96397 1.02795 1.01988 1.20394 0.92600 0.96973 0.88668 0.90063 1.60593 1.57716 1.10007 1.02926 1.21972 0.99719 0.94739 0.89798 1.22299 0.93462 0.91444 0.94437 1.87782 1.44982 1.48364 1.50764 1.20163 0.96070 0.89526 0.81895 1.21011 1.05497 1.15820 1.12932 0.91684 1.24947 0.96189 0.97661 0.95726 1.69950 1.27173 1.38453 1.18184 0.86404 0.81445 0.80931 0.77745 1.20081 1.21185 1.19971 1.19790 1.00200 0.93848 0.94893 1.20927 0.96698 0.93797 0.96952 1.21628 1.01204 1.02543 0.91798 1.17406 0.98264 0.91068 0.84947 1.44472 1.61904 1.06184 1.17103 1.22544 0.99863 0.96236 0.85121 1.22386 1.01500 0.83739 0.95621 1.45103 1.66876 1.09796 1.18412 1.15872 0.79171 0.82355 0.82787 1.90910 1.51900 1.54684 1.46359 1.20507 1.06457 0.91467 0.99756 1.20675 0.98544 0.99363 0.92375 0.92285 0.92180 0.91969 0.82288 0.94672 0.90754 0.94221 0.93552 0.97879 0.97621 0.92629 0.85255 0.82738 0.89099 0.89206 0.89465 0.89546 0.72485 0.86217 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 9.14 37.16 0.34 -1.72 16 2 C 0.12 1.52 2.79 -68.86 -0.19 1.32 16 3 H 0.08 0.89 7.66 -51.93 -0.40 0.50 16 4 N -0.68 -10.27 5.71 -107.95 -0.62 -10.88 16 5 C 0.07 1.01 5.90 -3.82 -0.02 0.99 16 6 C 0.06 1.17 6.28 37.16 0.23 1.40 16 7 O -0.40 -9.63 9.85 -35.23 -0.35 -9.97 16 8 C 0.20 5.53 5.69 36.01 0.20 5.73 16 9 C -0.51 -15.38 9.43 -34.44 -0.32 -15.70 16 10 H 0.06 1.92 7.81 -52.49 -0.41 1.51 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 13 Si 0.91 22.30 29.54 -169.99 -5.02 17.28 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 C -0.09 -1.07 4.96 -104.59 -0.52 -1.59 16 18 C -0.06 -0.91 9.31 -39.61 -0.37 -1.28 16 19 C -0.15 -2.18 9.29 -39.39 -0.37 -2.55 16 20 C 0.18 2.13 6.62 -83.69 -0.55 1.58 16 21 N -0.57 -5.78 3.16 -118.24 -0.37 -6.15 16 22 C 0.09 0.41 6.49 -3.16 -0.02 0.39 16 23 C 0.09 0.29 8.06 -3.16 -0.03 0.26 16 24 N -0.74 -5.09 6.37 -64.70 -0.41 -5.50 16 25 C 0.70 8.17 8.52 -88.40 -0.75 7.41 16 26 O -0.56 -9.04 14.76 5.29 0.08 -8.96 16 27 C -0.16 -1.60 9.49 -39.40 -0.37 -1.97 16 28 C -0.09 -0.95 9.66 -39.61 -0.38 -1.33 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 31 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 32 H 0.36 6.01 7.38 -39.29 -0.29 5.72 16 33 H 0.04 0.53 7.44 -51.93 -0.39 0.14 16 34 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 38 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.13 1.90 7.25 -52.49 -0.38 1.52 16 41 H 0.16 2.53 5.29 -52.49 -0.28 2.25 16 42 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.09 0.28 8.11 -51.93 -0.42 -0.14 16 44 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 45 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 46 H 0.43 2.22 8.96 -40.82 -0.37 1.86 16 47 H 0.12 0.83 7.29 -52.49 -0.38 0.45 16 48 H 0.12 0.99 8.03 -52.49 -0.42 0.57 16 LS Contribution 393.37 15.07 5.93 5.93 Total: -1.00 -36.20 393.37 -10.73 -46.93 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.48 Total: 3.49 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -3.22 Total: -5.50 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.67 Total: -49.19 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.27 Total: -18.93 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.20 -10.73 -46.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829758299.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.328 kcal (2) G-P(sol) polarization free energy of solvation -36.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds