Wall clock time and date at job start Tue Mar 31 2020 17:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47538 * 2 1 4 4 O 1.42907 * 109.46845 * 239.99949 * 2 1 3 5 5 C 1.52999 * 109.47442 * 120.00413 * 2 1 3 6 6 H 1.09002 * 109.70091 * 295.44766 * 5 2 1 7 7 C 1.53630 * 109.66296 * 56.02863 * 5 2 1 8 8 C 1.53041 * 109.24447 * 174.55003 * 7 5 2 9 9 H 1.08997 * 109.46081 * 178.49367 * 8 7 5 10 10 C 1.53002 * 109.45572 * 58.53583 * 8 7 5 11 11 C 1.53042 * 109.53957 * 298.51880 * 8 7 5 12 12 C 1.53196 * 109.31146 * 61.35703 * 11 8 7 13 13 N 1.46919 * 109.59000 * 175.08500 * 5 2 1 14 14 S 1.65598 * 120.63294 * 6.62683 * 13 5 2 15 15 O 1.42092 * 104.27795 * 151.54479 * 14 13 5 16 16 O 1.42109 * 104.27467 * 23.68796 * 14 13 5 17 17 C 1.81395 * 104.44959 * 267.61833 * 14 13 5 18 18 C 1.53002 * 109.47121 * 176.08949 * 17 14 13 19 19 C 1.52998 * 109.46956 * 300.00061 * 18 17 14 20 20 C 1.52994 * 109.47205 * 59.99843 * 18 17 14 21 21 C 1.50697 * 109.47328 * 180.02562 * 18 17 14 22 22 H 1.07999 * 119.99766 * 359.97438 * 21 18 17 23 23 C 1.37876 * 120.00113 * 180.02562 * 21 18 17 24 24 N 1.31510 * 119.99911 * 359.97438 * 23 21 18 25 25 Si 1.86802 * 119.99992 * 179.97438 * 23 21 18 26 26 H 1.48498 * 109.47173 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47503 * 119.99350 * 25 23 21 28 28 H 1.48501 * 109.46886 * 239.99420 * 25 23 21 29 29 H 1.09007 * 109.46981 * 300.00220 * 1 2 3 30 30 H 1.09006 * 109.47031 * 59.98894 * 1 2 3 31 31 H 1.08994 * 109.47948 * 179.97438 * 1 2 3 32 32 H 0.96695 * 113.99916 * 300.00525 * 4 2 1 33 33 H 1.09004 * 109.62978 * 54.56644 * 7 5 2 34 34 H 1.08996 * 109.46004 * 294.44351 * 7 5 2 35 35 H 1.09002 * 109.47133 * 299.93628 * 10 8 7 36 36 H 1.09004 * 109.47311 * 59.93100 * 10 8 7 37 37 H 1.08997 * 109.46999 * 179.97438 * 10 8 7 38 38 H 1.09003 * 109.49482 * 301.40906 * 11 8 7 39 39 H 1.08997 * 109.49645 * 181.31302 * 11 8 7 40 40 H 1.09004 * 109.58596 * 185.57453 * 12 11 8 41 41 H 1.09005 * 109.58241 * 65.15737 * 12 11 8 42 42 H 1.09002 * 109.47280 * 56.09196 * 17 14 13 43 43 H 1.08997 * 109.47487 * 296.08940 * 17 14 13 44 44 H 1.08996 * 109.47524 * 59.99791 * 19 18 17 45 45 H 1.09002 * 109.47110 * 180.02562 * 19 18 17 46 46 H 1.09002 * 109.47278 * 299.99651 * 19 18 17 47 47 H 1.08997 * 109.47181 * 60.00035 * 20 18 17 48 48 H 1.09001 * 109.47447 * 180.02562 * 20 18 17 49 49 H 1.09000 * 109.47530 * 300.00276 * 20 18 17 50 50 H 0.97009 * 119.99766 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0062 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 1 1.7468 -0.1656 2.1399 7 6 1.4502 -2.1388 1.3046 8 6 2.0704 -2.8976 2.4802 9 1 1.6347 -3.8949 2.5390 10 6 1.7893 -2.1412 3.7801 11 6 3.5825 -3.0130 2.2743 12 6 4.1959 -1.6100 2.2265 13 7 3.5044 -0.8264 1.1939 14 16 4.3599 -0.0702 -0.0055 15 8 5.6256 0.1975 0.5822 16 8 3.5102 0.9874 -0.4287 17 6 4.5154 -1.3221 -1.3089 18 6 5.2110 -0.7082 -2.5255 19 6 4.3840 0.4694 -3.0454 20 6 6.6024 -0.2157 -2.1228 21 6 5.3395 -1.7480 -3.6086 22 1 4.9632 -2.7471 -3.4454 23 6 5.9386 -1.4243 -4.8075 24 7 6.3973 -0.2079 -5.0060 25 14 6.0986 -2.7136 -6.1498 26 1 5.5084 -3.9928 -5.6803 27 1 5.3811 -2.2538 -7.3659 28 1 7.5340 -2.9192 -6.4700 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3635 -1.0276 -0.0005 32 1 1.7208 -1.5952 -1.2330 33 1 1.6713 -2.6641 0.3754 34 1 0.3704 -2.0778 1.4400 35 1 2.2253 -1.1439 3.7218 36 1 0.7124 -2.0588 3.9270 37 1 2.2305 -2.6817 4.6176 38 1 3.7835 -3.5300 1.3359 39 1 4.0203 -3.5737 3.1001 40 1 5.2556 -1.6827 1.9818 41 1 4.0750 -1.1253 3.1953 42 1 3.5240 -1.6729 -1.5959 43 1 5.1045 -2.1611 -0.9386 44 1 4.2905 1.2217 -2.2622 45 1 4.8793 0.9065 -3.9124 46 1 3.3926 0.1186 -3.3324 47 1 7.1916 -1.0546 -1.7524 48 1 7.0978 0.2221 -2.9894 49 1 6.5091 0.5366 -1.3396 50 1 6.8185 0.0199 -5.8497 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831209880.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:05 Heat of formation + Delta-G solvation = -104.609020 kcal Electronic energy + Delta-G solvation = -30946.450093 eV Core-core repulsion = 27101.755945 eV Total energy + Delta-G solvation = -3844.694148 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.181 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.90723 -37.43935 -36.11743 -35.76779 -35.14602 -33.30266 -32.14415 -31.48318 -29.31429 -27.42400 -26.42773 -25.52856 -25.10852 -24.54314 -23.73957 -21.29963 -19.71274 -19.00861 -18.11602 -17.51300 -16.33947 -15.99699 -15.84130 -15.25427 -15.11128 -15.02518 -14.56718 -14.51685 -14.30155 -14.00415 -13.57017 -13.28282 -13.02384 -12.81711 -12.50674 -12.35417 -12.24170 -12.10312 -11.88961 -11.69954 -11.50163 -11.34553 -11.27379 -11.18435 -11.00231 -10.97935 -10.87790 -10.77084 -10.55838 -10.44742 -10.25885 -10.19989 -9.92209 -9.73900 -9.49716 -9.35575 -9.23025 -8.72432 -8.42936 -8.28966 -5.92969 -4.03908 1.10065 3.21929 3.29749 3.37958 3.40286 4.35675 4.41985 4.47459 4.55626 4.59125 4.73693 4.88262 4.91705 5.03024 5.12117 5.23846 5.29895 5.32221 5.38948 5.45540 5.50562 5.60111 5.61829 5.67756 5.74746 5.79049 5.84262 5.97417 6.01884 6.05411 6.08827 6.13898 6.25808 6.28618 6.61533 6.69812 6.86873 6.90053 6.96757 7.12678 7.27313 7.54257 7.70942 7.78314 7.84235 8.14195 8.25508 8.47436 8.94541 9.60394 11.08006 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016936 B = 0.004553 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.886449 B = 6147.798192 C = 6222.686172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.055 3.945 3 H 0.170 0.830 4 O -0.540 6.540 5 C 0.127 3.873 6 H 0.081 0.919 7 C -0.132 4.132 8 C -0.087 4.087 9 H 0.069 0.931 10 C -0.153 4.153 11 C -0.133 4.133 12 C 0.121 3.879 13 N -1.002 6.002 14 S 2.601 3.399 15 O -0.983 6.983 16 O -0.951 6.951 17 C -0.570 4.570 18 C 0.086 3.914 19 C -0.155 4.155 20 C -0.162 4.162 21 C -0.494 4.494 22 H 0.056 0.944 23 C 0.063 3.937 24 N -0.884 5.884 25 Si 0.892 3.108 26 H -0.275 1.275 27 H -0.284 1.284 28 H -0.285 1.285 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.362 0.638 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.136 0.864 43 H 0.099 0.901 44 H 0.031 0.969 45 H 0.084 0.916 46 H 0.041 0.959 47 H 0.033 0.967 48 H 0.094 0.906 49 H 0.019 0.981 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.500 -4.416 15.534 19.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.005 4.005 3 H 0.186 0.814 4 O -0.346 6.346 5 C 0.020 3.980 6 H 0.098 0.902 7 C -0.171 4.171 8 C -0.105 4.105 9 H 0.088 0.912 10 C -0.210 4.210 11 C -0.172 4.172 12 C -0.004 4.004 13 N -0.837 5.837 14 S 2.704 3.296 15 O -0.973 6.973 16 O -0.941 6.941 17 C -0.704 4.704 18 C 0.083 3.917 19 C -0.213 4.213 20 C -0.219 4.219 21 C -0.534 4.534 22 H 0.074 0.926 23 C -0.138 4.138 24 N -0.523 5.523 25 Si 0.720 3.280 26 H -0.200 1.200 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.211 0.789 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.154 0.846 43 H 0.118 0.882 44 H 0.050 0.950 45 H 0.102 0.898 46 H 0.060 0.940 47 H 0.052 0.948 48 H 0.112 0.888 49 H 0.038 0.962 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.791 -2.810 15.384 19.001 hybrid contribution -0.325 -2.118 -0.744 2.268 sum -11.116 -4.928 14.640 19.031 Atomic orbital electron populations 1.22532 0.96518 1.02093 1.02762 1.23431 0.93041 1.01447 0.82564 0.81367 1.87025 1.74928 1.28365 1.44305 1.21811 0.79811 0.96295 1.00034 0.90159 1.22150 0.99980 0.95946 0.99016 1.21001 0.95646 0.98996 0.94870 0.91237 1.21960 1.01232 1.01048 0.96807 1.21988 0.95483 0.97171 1.02567 1.21339 0.96463 0.90822 0.91800 1.57998 1.14452 1.68426 1.42846 1.05459 0.72393 0.77281 0.74485 1.93492 1.42921 1.84396 1.76488 1.93387 1.64257 1.54228 1.82232 1.30728 1.10267 1.14785 1.14616 1.17853 0.90643 0.94239 0.88929 1.22178 0.99242 0.97412 1.02427 1.22254 0.99783 0.98917 1.00991 1.20988 1.38075 0.96320 0.98011 0.92553 1.24928 0.95384 0.95315 0.98189 1.69833 1.39628 1.18193 1.24621 0.86542 0.77663 0.81757 0.82008 1.19961 1.21056 1.21111 0.91976 0.91311 0.92597 0.78914 0.91264 0.90736 0.91950 0.92870 0.92790 0.91145 0.91014 0.89401 0.91503 0.84628 0.88214 0.94982 0.89773 0.93995 0.94795 0.88765 0.96207 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 9.09 37.16 0.34 -1.45 16 2 C 0.06 0.72 2.48 -26.73 -0.07 0.65 16 3 H 0.17 2.68 5.33 -54.75 -0.29 2.39 16 4 O -0.54 -7.99 7.82 -58.82 -0.46 -8.45 16 5 C 0.13 1.46 2.39 -67.38 -0.16 1.30 16 6 H 0.08 0.84 6.69 -51.93 -0.35 0.50 16 7 C -0.13 -1.19 4.16 -26.38 -0.11 -1.30 16 8 C -0.09 -0.74 3.19 -90.58 -0.29 -1.02 16 9 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 10 C -0.15 -1.20 8.43 37.16 0.31 -0.88 16 11 C -0.13 -1.29 5.63 -26.61 -0.15 -1.44 16 12 C 0.12 1.48 5.84 -3.71 -0.02 1.46 16 13 N -1.00 -14.05 3.18 -106.23 -0.34 -14.39 16 14 S 2.60 49.51 3.68 -107.50 -0.40 49.11 16 15 O -0.98 -21.67 14.73 -57.54 -0.85 -22.52 16 16 O -0.95 -19.32 9.71 -66.92 -0.65 -19.97 16 17 C -0.57 -11.43 4.54 37.16 0.17 -11.26 16 18 C 0.09 2.12 0.52 -155.66 -0.08 2.04 16 19 C -0.15 -3.92 7.77 37.16 0.29 -3.63 16 20 C -0.16 -4.15 7.79 37.15 0.29 -3.86 16 21 C -0.49 -13.21 8.01 -34.44 -0.28 -13.48 16 22 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 23 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 24 N -0.88 -24.75 9.35 55.43 0.52 -24.23 16 25 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 26 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.46 6.50 -51.93 -0.34 0.12 16 32 H 0.36 4.12 6.72 45.56 0.31 4.43 16 33 H 0.07 0.63 6.67 -51.93 -0.35 0.28 16 34 H 0.07 0.56 6.72 -51.93 -0.35 0.21 16 35 H 0.06 0.54 4.97 -51.93 -0.26 0.28 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 1.17 7.16 -51.93 -0.37 0.79 16 41 H 0.07 0.73 6.69 -51.93 -0.35 0.38 16 42 H 0.14 2.45 4.90 -51.92 -0.25 2.20 16 43 H 0.10 1.89 8.14 -51.93 -0.42 1.46 16 44 H 0.03 0.78 5.28 -51.93 -0.27 0.50 16 45 H 0.08 2.32 6.07 -51.93 -0.32 2.00 16 46 H 0.04 1.02 8.02 -51.93 -0.42 0.61 16 47 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.09 2.60 6.07 -51.93 -0.32 2.28 16 49 H 0.02 0.48 5.65 -51.93 -0.29 0.19 16 50 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -32.10 357.10 -9.22 -41.32 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -7.56 Total: 9.02 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 0.15 Total: -31.26 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.18 Total: -38.62 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: -1.96 Total: -50.94 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 49.51 SS G_CDS: -0.40 Total: 49.11 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.10 -9.22 -41.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831209880.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.287 kcal (2) G-P(sol) polarization free energy of solvation -32.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds