Wall clock time and date at job start Tue Mar 31 2020 17:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47538 * 2 1 4 4 O 1.42907 * 109.46845 * 239.99949 * 2 1 3 5 5 C 1.52999 * 109.47442 * 120.00413 * 2 1 3 6 6 H 1.09002 * 109.70091 * 295.44766 * 5 2 1 7 7 C 1.53630 * 109.66296 * 56.02863 * 5 2 1 8 8 C 1.53041 * 109.24447 * 174.55003 * 7 5 2 9 9 H 1.08997 * 109.46081 * 178.49367 * 8 7 5 10 10 C 1.53002 * 109.45572 * 58.53583 * 8 7 5 11 11 C 1.53042 * 109.53957 * 298.51880 * 8 7 5 12 12 C 1.53196 * 109.31146 * 61.35703 * 11 8 7 13 13 N 1.46919 * 109.59000 * 175.08500 * 5 2 1 14 14 S 1.65598 * 120.63294 * 6.62683 * 13 5 2 15 15 O 1.42092 * 104.27795 * 151.54479 * 14 13 5 16 16 O 1.42109 * 104.27467 * 23.68796 * 14 13 5 17 17 C 1.81395 * 104.44959 * 267.61833 * 14 13 5 18 18 C 1.53002 * 109.47121 * 176.08949 * 17 14 13 19 19 C 1.52998 * 109.46956 * 300.00061 * 18 17 14 20 20 C 1.52994 * 109.47205 * 59.99843 * 18 17 14 21 21 C 1.50697 * 109.47328 * 180.02562 * 18 17 14 22 22 H 1.07999 * 119.99766 * 359.97438 * 21 18 17 23 23 C 1.37876 * 120.00113 * 180.02562 * 21 18 17 24 24 N 1.31510 * 119.99911 * 359.97438 * 23 21 18 25 25 Si 1.86802 * 119.99992 * 179.97438 * 23 21 18 26 26 H 1.48498 * 109.47173 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47503 * 119.99350 * 25 23 21 28 28 H 1.48501 * 109.46886 * 239.99420 * 25 23 21 29 29 H 1.09007 * 109.46981 * 300.00220 * 1 2 3 30 30 H 1.09006 * 109.47031 * 59.98894 * 1 2 3 31 31 H 1.08994 * 109.47948 * 179.97438 * 1 2 3 32 32 H 0.96695 * 113.99916 * 300.00525 * 4 2 1 33 33 H 1.09004 * 109.62978 * 54.56644 * 7 5 2 34 34 H 1.08996 * 109.46004 * 294.44351 * 7 5 2 35 35 H 1.09002 * 109.47133 * 299.93628 * 10 8 7 36 36 H 1.09004 * 109.47311 * 59.93100 * 10 8 7 37 37 H 1.08997 * 109.46999 * 179.97438 * 10 8 7 38 38 H 1.09003 * 109.49482 * 301.40906 * 11 8 7 39 39 H 1.08997 * 109.49645 * 181.31302 * 11 8 7 40 40 H 1.09004 * 109.58596 * 185.57453 * 12 11 8 41 41 H 1.09005 * 109.58241 * 65.15737 * 12 11 8 42 42 H 1.09002 * 109.47280 * 56.09196 * 17 14 13 43 43 H 1.08997 * 109.47487 * 296.08940 * 17 14 13 44 44 H 1.08996 * 109.47524 * 59.99791 * 19 18 17 45 45 H 1.09002 * 109.47110 * 180.02562 * 19 18 17 46 46 H 1.09002 * 109.47278 * 299.99651 * 19 18 17 47 47 H 1.08997 * 109.47181 * 60.00035 * 20 18 17 48 48 H 1.09001 * 109.47447 * 180.02562 * 20 18 17 49 49 H 1.09000 * 109.47530 * 300.00276 * 20 18 17 50 50 H 0.97009 * 119.99766 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0062 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 1 1.7468 -0.1656 2.1399 7 6 1.4502 -2.1388 1.3046 8 6 2.0704 -2.8976 2.4802 9 1 1.6347 -3.8949 2.5390 10 6 1.7893 -2.1412 3.7801 11 6 3.5825 -3.0130 2.2743 12 6 4.1959 -1.6100 2.2265 13 7 3.5044 -0.8264 1.1939 14 16 4.3599 -0.0702 -0.0055 15 8 5.6256 0.1975 0.5822 16 8 3.5102 0.9874 -0.4287 17 6 4.5154 -1.3221 -1.3089 18 6 5.2110 -0.7082 -2.5255 19 6 4.3840 0.4694 -3.0454 20 6 6.6024 -0.2157 -2.1228 21 6 5.3395 -1.7480 -3.6086 22 1 4.9632 -2.7471 -3.4454 23 6 5.9386 -1.4243 -4.8075 24 7 6.3973 -0.2079 -5.0060 25 14 6.0986 -2.7136 -6.1498 26 1 5.5084 -3.9928 -5.6803 27 1 5.3811 -2.2538 -7.3659 28 1 7.5340 -2.9192 -6.4700 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3635 -1.0276 -0.0005 32 1 1.7208 -1.5952 -1.2330 33 1 1.6713 -2.6641 0.3754 34 1 0.3704 -2.0778 1.4400 35 1 2.2253 -1.1439 3.7218 36 1 0.7124 -2.0588 3.9270 37 1 2.2305 -2.6817 4.6176 38 1 3.7835 -3.5300 1.3359 39 1 4.0203 -3.5737 3.1001 40 1 5.2556 -1.6827 1.9818 41 1 4.0750 -1.1253 3.1953 42 1 3.5240 -1.6729 -1.5959 43 1 5.1045 -2.1611 -0.9386 44 1 4.2905 1.2217 -2.2622 45 1 4.8793 0.9065 -3.9124 46 1 3.3926 0.1186 -3.3324 47 1 7.1916 -1.0546 -1.7524 48 1 7.0978 0.2221 -2.9894 49 1 6.5091 0.5366 -1.3396 50 1 6.8185 0.0199 -5.8497 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831209880.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:04 Heat of formation + Delta-G solvation = -125.935678 kcal Electronic energy + Delta-G solvation = -30947.374886 eV Core-core repulsion = 27101.755945 eV Total energy + Delta-G solvation = -3845.618942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.181 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.82660 -38.65373 -38.00667 -37.12586 -36.72070 -34.25641 -33.57542 -33.01149 -30.16226 -28.16315 -28.08566 -27.60023 -27.19016 -25.42241 -24.64419 -22.26248 -21.27702 -20.41682 -19.27776 -18.78605 -17.83758 -17.46927 -17.07674 -16.79539 -16.50040 -16.20561 -15.85774 -15.69462 -15.26706 -14.99273 -14.81008 -14.48834 -14.35374 -14.27947 -14.08770 -13.77558 -13.56653 -13.30351 -13.08999 -12.91118 -12.85209 -12.73663 -12.67693 -12.57049 -12.36734 -12.19297 -12.14824 -12.06616 -12.02788 -11.95011 -11.71465 -11.59155 -11.43057 -11.32649 -11.19838 -10.72930 -10.63266 -10.39260 -10.25093 -9.69626 -7.98141 -6.16205 -0.38502 1.43298 1.45583 1.55542 1.94109 2.46553 3.08469 3.23727 3.37398 3.46360 3.60746 3.83928 3.95868 4.14258 4.17808 4.22603 4.30186 4.38591 4.45110 4.48330 4.62766 4.70679 4.71182 4.77913 4.86316 4.91318 4.92172 4.95247 4.96882 5.01704 5.13092 5.18324 5.20557 5.25440 5.33037 5.33872 5.37803 5.44181 5.53388 5.59421 5.60082 5.65681 5.69626 5.86194 6.06028 6.19853 6.41454 6.88936 6.94066 7.51188 9.01624 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016936 B = 0.004553 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.886449 B = 6147.798192 C = 6222.686172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.052 3.948 3 H 0.135 0.865 4 O -0.566 6.566 5 C 0.126 3.874 6 H 0.095 0.905 7 C -0.129 4.129 8 C -0.084 4.084 9 H 0.087 0.913 10 C -0.153 4.153 11 C -0.131 4.131 12 C 0.112 3.888 13 N -0.993 5.993 14 S 2.614 3.386 15 O -1.019 7.019 16 O -0.967 6.967 17 C -0.573 4.573 18 C 0.076 3.924 19 C -0.143 4.143 20 C -0.158 4.158 21 C -0.508 4.508 22 H 0.061 0.939 23 C 0.015 3.985 24 N -0.911 5.911 25 Si 0.953 3.047 26 H -0.264 1.264 27 H -0.284 1.284 28 H -0.285 1.285 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.376 0.624 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.156 0.844 43 H 0.108 0.892 44 H 0.033 0.967 45 H 0.056 0.944 46 H 0.042 0.958 47 H 0.034 0.966 48 H 0.070 0.930 49 H 0.020 0.980 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.736 -6.705 17.105 22.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.008 4.008 3 H 0.152 0.848 4 O -0.375 6.375 5 C 0.020 3.980 6 H 0.113 0.887 7 C -0.168 4.168 8 C -0.102 4.102 9 H 0.105 0.895 10 C -0.210 4.210 11 C -0.170 4.170 12 C -0.013 4.013 13 N -0.831 5.831 14 S 2.715 3.285 15 O -1.009 7.009 16 O -0.958 6.958 17 C -0.705 4.705 18 C 0.074 3.926 19 C -0.200 4.200 20 C -0.215 4.215 21 C -0.548 4.548 22 H 0.079 0.921 23 C -0.184 4.184 24 N -0.550 5.550 25 Si 0.780 3.220 26 H -0.188 1.188 27 H -0.210 1.210 28 H -0.211 1.211 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.227 0.773 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.173 0.827 43 H 0.126 0.874 44 H 0.051 0.949 45 H 0.075 0.925 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.089 0.911 49 H 0.038 0.962 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.027 -5.113 16.949 21.980 hybrid contribution 0.336 -1.366 -1.151 1.818 sum -12.692 -6.479 15.798 21.275 Atomic orbital electron populations 1.22440 0.93821 1.03716 1.03068 1.23288 0.95162 0.99693 0.82680 0.84791 1.86953 1.75673 1.29591 1.45266 1.22030 0.77874 0.98367 0.99703 0.88698 1.22186 1.01273 0.93826 0.99512 1.21022 0.94422 0.99926 0.94879 0.89494 1.21951 1.02064 1.00322 0.96632 1.22001 0.96649 0.95223 1.03088 1.21591 0.95738 0.92455 0.91529 1.57597 1.15615 1.68372 1.41543 1.04808 0.71861 0.77087 0.74711 1.93438 1.45353 1.85014 1.77102 1.93429 1.64080 1.55296 1.82962 1.30685 1.10964 1.15377 1.13517 1.17821 0.90259 0.93863 0.90685 1.22027 0.98954 0.97771 1.01293 1.22191 1.00633 0.98839 0.99881 1.21321 1.37875 0.96864 0.98697 0.92112 1.25692 0.95264 0.97050 1.00406 1.69984 1.40198 1.19824 1.25006 0.85580 0.77421 0.79795 0.79250 1.18832 1.20985 1.21139 0.90234 0.92518 0.90232 0.77333 0.91147 0.88252 0.93096 0.91644 0.92073 0.91762 0.89147 0.91111 0.90038 0.82692 0.87393 0.94853 0.92524 0.93897 0.94680 0.91132 0.96151 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.09 71.98 0.65 -2.31 16 2 C 0.05 1.28 2.48 30.59 0.08 1.35 16 3 H 0.14 4.29 5.33 -47.07 -0.25 4.04 16 4 O -0.57 -16.20 7.82 -126.43 -0.99 -17.19 16 5 C 0.13 2.59 2.39 45.12 0.11 2.70 16 6 H 0.10 1.72 6.69 -2.39 -0.02 1.71 16 7 C -0.13 -1.82 4.16 30.82 0.13 -1.70 16 8 C -0.08 -1.09 3.19 -10.77 -0.03 -1.12 16 9 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 10 C -0.15 -1.77 8.43 71.98 0.61 -1.17 16 11 C -0.13 -2.15 5.63 30.67 0.17 -1.98 16 12 C 0.11 2.55 5.84 86.36 0.50 3.05 16 13 N -0.99 -26.64 3.18 -490.01 -1.56 -28.20 16 14 S 2.61 100.20 3.68 -56.49 -0.21 99.99 16 15 O -1.02 -45.92 14.73 -127.65 -1.88 -47.80 16 16 O -0.97 -40.08 9.71 -118.68 -1.15 -41.23 16 17 C -0.57 -22.91 4.54 71.98 0.33 -22.58 16 18 C 0.08 3.81 0.52 -52.93 -0.03 3.78 16 19 C -0.14 -7.42 7.77 71.98 0.56 -6.86 16 20 C -0.16 -8.35 7.79 71.98 0.56 -7.79 16 21 C -0.51 -27.24 8.01 25.60 0.21 -27.04 16 22 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 23 C 0.01 0.79 5.15 84.66 0.44 1.23 16 24 N -0.91 -52.28 9.35 21.45 0.20 -52.08 16 25 Si 0.95 43.17 29.54 68.60 2.03 45.20 16 26 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 27 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 28 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 29 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.08 0.99 6.50 -2.39 -0.02 0.98 16 32 H 0.38 7.84 6.72 -74.06 -0.50 7.34 16 33 H 0.07 1.01 6.67 -2.38 -0.02 0.99 16 34 H 0.10 0.97 6.72 -2.39 -0.02 0.95 16 35 H 0.05 0.71 4.97 -2.39 -0.01 0.70 16 36 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.86 7.16 -2.38 -0.02 1.84 16 41 H 0.08 1.62 6.69 -2.38 -0.02 1.61 16 42 H 0.16 5.48 4.90 -2.39 -0.01 5.47 16 43 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 44 H 0.03 1.68 5.28 -2.39 -0.01 1.67 16 45 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 46 H 0.04 2.14 8.02 -2.39 -0.02 2.12 16 47 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.07 4.05 6.07 -2.39 -0.01 4.03 16 49 H 0.02 1.03 5.65 -2.39 -0.01 1.02 16 50 H 0.26 14.20 8.31 -92.70 -0.77 13.43 16 Total: -1.00 -71.00 357.10 0.92 -70.07 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: 0.21 Total: 31.68 kcal Atomic # 6 Polarization: -64.71 SS G_CDS: 4.28 Total: -60.43 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -1.36 Total: -80.28 kcal Atomic # 8 Polarization: -102.20 SS G_CDS: -4.02 Total: -106.22 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 100.20 SS G_CDS: -0.21 Total: 99.99 kcal Total: -71.00 0.92 -70.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831209880.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.861 kcal (2) G-P(sol) polarization free energy of solvation -70.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds