Wall clock time and date at job start Tue Mar 31 2020 17:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47208 * 2 1 4 4 O 1.42902 * 109.47352 * 119.99900 * 2 1 3 5 5 C 1.53001 * 109.47386 * 240.00064 * 2 1 3 6 6 H 1.09003 * 109.69619 * 299.81795 * 5 2 1 7 7 C 1.53190 * 109.58684 * 60.17507 * 5 2 1 8 8 C 1.53037 * 109.31181 * 174.42570 * 7 5 2 9 9 H 1.08998 * 109.46038 * 178.61539 * 8 7 5 10 10 C 1.52999 * 109.46240 * 58.65425 * 8 7 5 11 11 C 1.53045 * 109.53746 * 298.63181 * 8 7 5 12 12 C 1.52764 * 109.38203 * 61.24338 * 11 8 7 13 13 N 1.46926 * 109.00671 * 305.58752 * 12 11 8 14 14 S 1.65603 * 120.63013 * 233.58350 * 13 12 11 15 15 O 1.42104 * 104.27597 * 146.99081 * 14 13 12 16 16 O 1.42100 * 104.27418 * 19.13402 * 14 13 12 17 17 C 1.81401 * 104.44964 * 263.06302 * 14 13 12 18 18 C 1.52999 * 109.47104 * 183.18441 * 17 14 13 19 19 C 1.53004 * 109.46910 * 60.00225 * 18 17 14 20 20 C 1.53000 * 109.46991 * 300.00023 * 18 17 14 21 21 C 1.50695 * 109.46760 * 179.97438 * 18 17 14 22 22 H 1.08002 * 120.00778 * 0.02562 * 21 18 17 23 23 C 1.37884 * 119.99767 * 179.97438 * 21 18 17 24 24 N 1.31510 * 119.99830 * 0.02562 * 23 21 18 25 25 Si 1.86792 * 120.00106 * 180.02562 * 23 21 18 26 26 H 1.48503 * 109.47347 * 60.00021 * 25 23 21 27 27 H 1.48507 * 109.47371 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.47439 * 300.00167 * 25 23 21 29 29 H 1.09003 * 109.47582 * 294.10634 * 1 2 3 30 30 H 1.08993 * 109.47309 * 54.11000 * 1 2 3 31 31 H 1.08998 * 109.47008 * 174.11009 * 1 2 3 32 32 H 0.96708 * 113.99805 * 300.00079 * 4 2 1 33 33 H 1.08997 * 109.49776 * 294.37692 * 7 5 2 34 34 H 1.08996 * 109.49910 * 54.47147 * 7 5 2 35 35 H 1.08999 * 109.47113 * 60.00209 * 10 8 7 36 36 H 1.09002 * 109.47115 * 180.02562 * 10 8 7 37 37 H 1.08999 * 109.46880 * 300.00102 * 10 8 7 38 38 H 1.08996 * 109.49609 * 181.31338 * 11 8 7 39 39 H 1.08998 * 109.50115 * 301.41698 * 11 8 7 40 40 H 1.08999 * 109.50923 * 185.70403 * 12 11 8 41 41 H 1.09000 * 109.43398 * 65.41995 * 12 11 8 42 42 H 1.08998 * 109.47050 * 63.18263 * 17 14 13 43 43 H 1.09004 * 109.47064 * 303.18651 * 17 14 13 44 44 H 1.08994 * 109.47260 * 59.99767 * 19 18 17 45 45 H 1.08997 * 109.46695 * 299.99810 * 19 18 17 46 46 H 1.09001 * 109.46864 * 180.02562 * 19 18 17 47 47 H 1.08998 * 109.46715 * 179.97438 * 20 18 17 48 48 H 1.08998 * 109.47059 * 300.00115 * 20 18 17 49 49 H 1.09001 * 109.46771 * 60.00384 * 20 18 17 50 50 H 0.97003 * 120.00225 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2492 6 1 1.6814 -1.7506 -1.2513 7 6 1.5345 0.0014 -2.5018 8 6 2.1596 -0.6396 -3.7429 9 1 1.7825 -0.1432 -4.6370 10 6 1.7912 -2.1238 -3.7905 11 6 3.6819 -0.4938 -3.6825 12 6 4.2118 -1.2169 -2.4455 13 7 3.5092 -0.7115 -1.2582 14 16 4.3572 -0.1355 0.0424 15 8 3.5352 0.8984 0.5666 16 8 5.6483 0.1483 -0.4789 17 6 4.4289 -1.5365 1.1925 18 6 5.1275 -1.1021 2.4825 19 6 4.3451 0.0453 3.1246 20 6 6.5479 -0.6335 2.1603 21 6 5.1864 -2.2659 3.4381 22 1 4.7679 -3.2200 3.1537 23 6 5.7757 -2.1128 4.6752 24 7 6.2858 -0.9512 5.0214 25 14 5.8495 -3.5555 5.8595 26 1 6.6083 -4.6694 5.2361 27 1 6.5274 -3.1339 7.1117 28 1 4.4708 -4.0100 6.1726 29 1 -0.3634 0.4197 0.9380 30 1 -0.3633 0.6024 -0.8325 31 1 -0.3633 -1.0222 -0.1055 32 1 1.7210 -0.2700 1.9980 33 1 0.4491 -0.0821 -2.5568 34 1 1.8169 1.0530 -2.4541 35 1 0.7071 -2.2278 -3.8348 36 1 2.2368 -2.5806 -4.6742 37 1 2.1676 -2.6204 -2.8962 38 1 4.1249 -0.9299 -4.5778 39 1 3.9442 0.5625 -3.6236 40 1 5.2809 -1.0301 -2.3447 41 1 4.0338 -2.2875 -2.5472 42 1 4.9861 -2.3540 0.7350 43 1 3.4169 -1.8704 1.4219 44 1 3.3333 -0.2885 3.3541 45 1 4.3021 0.8871 2.4336 46 1 4.8431 0.3551 4.0434 47 1 7.0454 -0.3237 3.0793 48 1 7.1052 -1.4510 1.7028 49 1 6.5047 0.2083 1.4693 50 1 6.7000 -0.8433 5.8919 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831209883.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:07 Heat of formation + Delta-G solvation = -112.378586 kcal Electronic energy + Delta-G solvation = -30764.610538 eV Core-core repulsion = 26919.579476 eV Total energy + Delta-G solvation = -3845.031062 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.181 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.65988 -37.50141 -36.13614 -35.66320 -35.09497 -33.24269 -32.35977 -31.51999 -29.17552 -27.34631 -26.32986 -25.62102 -25.12980 -24.38958 -23.66085 -21.18757 -19.51203 -19.22452 -18.15964 -16.99715 -16.75237 -16.06493 -15.83623 -15.34580 -15.18587 -14.71783 -14.59634 -14.43784 -14.26664 -13.83005 -13.64623 -13.23817 -13.03101 -12.81789 -12.59990 -12.34286 -12.14976 -12.01191 -11.89963 -11.69196 -11.38625 -11.32580 -11.10784 -11.07481 -10.97763 -10.94053 -10.87074 -10.79679 -10.47646 -10.38340 -10.28660 -10.22317 -10.08759 -9.92878 -9.52224 -9.34707 -9.14276 -8.71029 -8.42156 -8.31362 -5.94898 -4.05661 1.14293 3.26973 3.31319 3.36421 3.38706 4.19981 4.41982 4.52144 4.60871 4.69172 4.81732 4.93498 5.00480 5.14160 5.22469 5.30086 5.31398 5.38007 5.45252 5.54471 5.55724 5.66300 5.69197 5.71086 5.83908 5.86816 5.92560 5.99343 6.04066 6.10063 6.15050 6.21704 6.28198 6.39141 6.52545 6.69457 6.90437 6.90769 6.96275 7.07946 7.17716 7.45474 7.62767 7.76391 7.96288 8.08873 8.21356 8.44955 8.92862 9.58789 11.06033 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019109 B = 0.004350 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.939847 B = 6435.489552 C = 6769.787219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.057 3.943 3 H 0.120 0.880 4 O -0.565 6.565 5 C 0.168 3.832 6 H 0.076 0.924 7 C -0.122 4.122 8 C -0.088 4.088 9 H 0.070 0.930 10 C -0.154 4.154 11 C -0.128 4.128 12 C 0.114 3.886 13 N -1.003 6.003 14 S 2.609 3.391 15 O -0.962 6.962 16 O -0.984 6.984 17 C -0.572 4.572 18 C 0.085 3.915 19 C -0.156 4.156 20 C -0.162 4.162 21 C -0.495 4.495 22 H 0.056 0.944 23 C 0.063 3.937 24 N -0.886 5.886 25 Si 0.893 3.107 26 H -0.278 1.278 27 H -0.287 1.287 28 H -0.278 1.278 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.390 0.610 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.100 0.900 43 H 0.147 0.853 44 H 0.035 0.965 45 H 0.032 0.968 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.033 0.967 49 H 0.020 0.980 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.117 0.779 -15.573 19.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.003 4.003 3 H 0.137 0.863 4 O -0.376 6.376 5 C 0.061 3.939 6 H 0.094 0.906 7 C -0.161 4.161 8 C -0.107 4.107 9 H 0.089 0.911 10 C -0.211 4.211 11 C -0.167 4.167 12 C -0.011 4.011 13 N -0.838 5.838 14 S 2.711 3.289 15 O -0.952 6.952 16 O -0.975 6.975 17 C -0.705 4.705 18 C 0.083 3.917 19 C -0.214 4.214 20 C -0.220 4.220 21 C -0.535 4.535 22 H 0.074 0.926 23 C -0.138 4.138 24 N -0.524 5.524 25 Si 0.721 3.279 26 H -0.204 1.204 27 H -0.213 1.213 28 H -0.204 1.204 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.242 0.758 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.118 0.882 43 H 0.165 0.835 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.106 0.894 47 H 0.112 0.888 48 H 0.053 0.947 49 H 0.039 0.961 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.379 1.382 -15.821 18.972 hybrid contribution -0.414 -1.266 1.157 1.764 sum -10.793 0.116 -14.664 18.209 Atomic orbital electron populations 1.22518 0.96808 1.02179 1.02381 1.22823 0.92554 1.00049 0.84840 0.86253 1.86368 1.76629 1.57749 1.16825 1.20938 0.79490 0.99678 0.93762 0.90604 1.21945 1.00108 1.00222 0.93814 1.21039 0.95540 0.96446 0.97680 0.91145 1.21968 1.01096 0.95842 1.02213 1.21830 0.95438 1.01515 0.97879 1.21330 0.97445 0.97840 0.84519 1.57923 1.13949 1.81136 1.30827 1.05185 0.72141 0.77883 0.73680 1.93378 1.66529 1.55680 1.79643 1.93473 1.40846 1.84669 1.78485 1.30684 1.10972 1.16072 1.12817 1.17840 0.90651 0.95343 0.87859 1.22228 0.99121 0.96824 1.03240 1.22257 0.99628 0.98152 1.01954 1.20940 1.37580 0.95963 0.99013 0.92563 1.24927 0.95247 0.95713 0.97899 1.69801 1.38725 1.22734 1.21186 0.86651 0.78159 0.82782 0.80303 1.20395 1.21306 1.20355 0.91978 0.91886 0.92412 0.75844 0.90750 0.91166 0.92819 0.92760 0.91782 0.90971 0.91472 0.88681 0.91738 0.88169 0.83511 0.94560 0.94951 0.89431 0.88808 0.94735 0.96071 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 9.02 37.15 0.34 -1.51 16 2 C 0.06 0.76 2.25 -26.73 -0.06 0.70 16 3 H 0.12 1.82 5.65 -52.89 -0.30 1.52 16 4 O -0.56 -8.57 6.51 -59.51 -0.39 -8.96 16 5 C 0.17 2.12 2.28 -67.60 -0.15 1.97 16 6 H 0.08 0.91 6.69 -51.93 -0.35 0.57 16 7 C -0.12 -1.25 4.40 -26.61 -0.12 -1.37 16 8 C -0.09 -0.82 3.19 -90.58 -0.29 -1.11 16 9 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 10 C -0.15 -1.31 8.43 37.16 0.31 -1.00 16 11 C -0.13 -1.35 5.61 -26.83 -0.15 -1.50 16 12 C 0.11 1.48 5.97 -3.93 -0.02 1.46 16 13 N -1.00 -14.98 3.22 -106.71 -0.34 -15.33 16 14 S 2.61 50.09 3.81 -107.50 -0.41 49.68 16 15 O -0.96 -18.91 9.73 -67.18 -0.65 -19.56 16 16 O -0.98 -21.69 14.28 -57.54 -0.82 -22.51 16 17 C -0.57 -11.81 4.48 37.16 0.17 -11.65 16 18 C 0.09 2.09 0.52 -155.66 -0.08 2.01 16 19 C -0.16 -3.75 7.43 37.16 0.28 -3.47 16 20 C -0.16 -4.14 7.79 37.16 0.29 -3.85 16 21 C -0.50 -13.23 8.01 -34.44 -0.28 -13.50 16 22 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 23 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 24 N -0.89 -24.45 9.35 55.43 0.52 -23.93 16 25 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.55 6.90 -51.93 -0.36 0.19 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.39 5.35 8.08 45.56 0.37 5.72 16 33 H 0.07 0.62 6.90 -51.93 -0.36 0.26 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.61 4.99 -51.93 -0.26 0.35 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.09 1.35 6.69 -51.93 -0.35 1.01 16 41 H 0.06 0.72 6.70 -51.93 -0.35 0.38 16 42 H 0.10 2.00 8.14 -51.93 -0.42 1.58 16 43 H 0.15 2.88 5.38 -51.92 -0.28 2.60 16 44 H 0.04 0.79 6.90 -51.93 -0.36 0.43 16 45 H 0.03 0.74 5.31 -51.93 -0.28 0.46 16 46 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 47 H 0.09 2.56 6.07 -51.93 -0.32 2.24 16 48 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 49 H 0.02 0.51 5.61 -51.93 -0.29 0.22 16 50 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 LS Contribution 357.72 15.07 5.39 5.39 Total: -1.00 -30.87 357.72 -9.14 -40.02 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -7.55 Total: 10.45 kcal Atomic # 6 Polarization: -31.33 SS G_CDS: 0.14 Total: -31.19 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.17 Total: -39.26 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -1.86 Total: -51.03 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 50.09 SS G_CDS: -0.41 Total: 49.68 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.87 -9.14 -40.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831209883.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.362 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds