Wall clock time and date at job start Tue Mar 31 2020 17:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.45087 * 2 1 4 4 C 1.53041 * 109.46217 * 119.96964 * 2 1 3 5 5 C 1.53192 * 109.31274 * 181.38682 * 4 2 1 6 6 N 1.46924 * 108.77400 * 305.36114 * 5 4 2 7 7 C 1.34773 * 120.63063 * 233.58668 * 6 5 4 8 8 O 1.21588 * 120.00004 * 185.47914 * 7 6 5 9 9 N 1.34780 * 120.00347 * 5.48206 * 7 6 5 10 10 C 1.39939 * 120.00139 * 171.02756 * 9 7 6 11 11 C 1.38953 * 120.03844 * 25.57694 * 10 9 7 12 12 C 1.38158 * 120.06973 * 180.02562 * 11 10 9 13 13 C 1.38169 * 120.13477 * 359.69721 * 12 11 10 14 14 C 1.38909 * 120.07263 * 0.55680 * 13 12 11 15 15 O 1.35745 * 120.03632 * 179.74367 * 14 13 12 16 16 C 1.34833 * 117.00046 * 187.98870 * 15 14 13 17 17 H 1.07998 * 119.99924 * 354.63774 * 16 15 14 18 18 C 1.38652 * 119.99995 * 174.36955 * 16 15 14 19 19 N 1.31564 * 119.99853 * 0.27147 * 18 16 15 20 20 Si 1.86796 * 120.00129 * 180.27489 * 18 16 15 21 21 H 1.48507 * 109.46910 * 59.99862 * 20 18 16 22 22 H 1.48496 * 109.47172 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47196 * 299.99416 * 20 18 16 24 24 C 1.38714 * 120.03173 * 205.55751 * 10 9 7 25 25 C 1.46930 * 118.73844 * 53.86174 * 6 5 4 26 26 C 1.53042 * 109.45906 * 240.03679 * 2 1 3 27 27 H 1.08994 * 109.49527 * 298.59595 * 26 2 1 28 28 C 1.53004 * 109.49782 * 58.66535 * 26 2 1 29 29 N 1.46894 * 109.46971 * 185.00179 * 28 26 2 30 30 H 1.09004 * 109.47060 * 300.03484 * 1 2 3 31 31 H 1.09003 * 109.47326 * 60.02870 * 1 2 3 32 32 H 1.08997 * 109.47172 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.50104 * 61.42938 * 4 2 1 34 34 H 1.08999 * 109.49583 * 301.33717 * 4 2 1 35 35 H 1.08999 * 109.58393 * 185.57629 * 5 4 2 36 36 H 1.08992 * 109.58998 * 65.15241 * 5 4 2 37 37 H 0.97005 * 119.99291 * 351.03048 * 9 7 6 38 38 H 1.07997 * 119.96375 * 359.97438 * 11 10 9 39 39 H 1.07998 * 119.93182 * 179.97438 * 12 11 10 40 40 H 1.07999 * 119.96416 * 180.27650 * 13 12 11 41 41 H 0.96998 * 119.99952 * 180.02562 * 19 18 16 42 42 H 1.08002 * 120.06836 * 0.04149 * 24 10 9 43 43 H 1.09005 * 109.58073 * 65.92955 * 25 6 5 44 44 H 1.08994 * 109.58724 * 186.35081 * 25 6 5 45 45 H 1.09004 * 109.46822 * 304.99649 * 28 26 2 46 46 H 1.08998 * 109.47300 * 64.99413 * 28 26 2 47 47 H 1.00900 * 111.00374 * 56.04344 * 29 28 26 48 48 H 1.00904 * 110.99793 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0398 -0.7208 1.2500 5 6 3.5714 -0.6886 1.2642 6 7 4.0678 -1.2488 -0.0001 7 6 4.9620 -2.2572 -0.0001 8 8 5.4404 -2.6454 -1.0484 9 7 5.3260 -2.8352 1.1617 10 6 6.1047 -3.9979 1.1510 11 6 6.9335 -4.2701 0.0694 12 6 7.7021 -5.4180 0.0579 13 6 7.6541 -6.2957 1.1239 14 6 6.8237 -6.0320 2.2058 15 8 6.7732 -6.8974 3.2504 16 6 5.8305 -6.6713 4.1875 17 1 5.2162 -5.7848 4.1327 18 6 5.6460 -7.5799 5.2185 19 7 6.3944 -8.6599 5.2853 20 14 4.3348 -7.2706 6.5125 21 1 3.0033 -7.1937 5.8595 22 1 4.3392 -8.3822 7.4972 23 1 4.6192 -5.9905 7.2093 24 6 6.0503 -4.8798 2.2203 25 6 3.5755 -0.6848 -1.2644 26 6 2.0398 -0.7207 -1.2501 27 1 1.6973 -1.7554 -1.2386 28 6 1.5027 -0.0187 -2.4990 29 7 1.8926 -0.7790 -3.6939 30 1 -0.3633 0.5144 0.8897 31 1 -0.3634 0.5134 -0.8903 32 1 -0.3633 -1.0276 0.0005 33 1 1.6978 -1.7557 1.2383 34 1 1.6572 -0.2208 2.1398 35 1 3.9417 -1.2845 2.0983 36 1 3.9143 0.3408 1.3673 37 1 5.0481 -2.4453 2.0053 38 1 6.9762 -3.5839 -0.7635 39 1 8.3452 -5.6276 -0.7841 40 1 8.2595 -7.1900 1.1141 41 1 6.2650 -9.2957 6.0063 42 1 5.4067 -4.6706 3.0620 43 1 3.9189 0.3451 -1.3632 44 1 3.9486 -1.2782 -2.0990 45 1 0.4156 0.0392 -2.4440 46 1 1.9177 0.9875 -2.5571 47 1 1.5745 -1.7347 -3.6342 48 1 1.5491 -0.3356 -4.5327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841049104.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:54 Heat of formation + Delta-G solvation = -20.576122 kcal Electronic energy + Delta-G solvation = -28865.501419 eV Core-core repulsion = 24921.300010 eV Total energy + Delta-G solvation = -3944.201409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.81574 -39.21496 -38.32734 -36.37260 -35.36023 -34.15426 -33.71920 -32.18082 -30.83268 -29.40979 -28.75656 -27.90123 -25.47518 -25.17401 -23.82624 -22.10568 -21.76919 -21.75796 -20.38588 -19.52930 -18.47038 -17.82431 -17.07106 -16.19169 -16.15443 -15.59723 -15.31905 -15.01752 -14.90574 -14.74843 -14.56445 -14.21506 -14.01342 -13.67161 -13.62414 -13.47908 -13.39492 -12.99110 -12.87677 -12.51247 -12.27622 -12.18237 -12.09197 -11.70594 -11.54920 -11.36259 -11.20795 -11.15712 -10.98861 -10.78703 -10.73034 -10.58660 -10.44989 -9.85606 -9.45723 -9.28025 -9.00489 -8.77779 -8.68870 -7.59592 -7.04246 -6.40473 -4.00312 2.15410 2.49636 2.62107 3.12366 3.14238 3.17070 3.33317 3.84360 3.98772 4.08615 4.33085 4.40974 4.55022 4.65674 4.70059 4.84601 5.03860 5.08322 5.11378 5.12810 5.21048 5.28298 5.33105 5.38255 5.46296 5.49898 5.57970 5.65898 5.73373 5.77948 5.86269 5.93638 6.09720 6.11985 6.18761 6.26922 6.32725 6.51691 6.64698 6.77494 6.90697 7.08270 7.08871 7.19612 7.28486 7.45563 7.51550 7.93615 8.03356 8.06709 8.67186 9.04892 9.77123 10.77843 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012795 B = 0.002955 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.757932 B = 9472.009078 C =11081.907997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 H 0.073 0.927 4 C -0.130 4.130 5 C 0.108 3.892 6 N -0.630 5.630 7 C 0.707 3.293 8 O -0.565 6.565 9 N -0.680 5.680 10 C 0.197 3.803 11 C -0.220 4.220 12 C -0.063 4.063 13 C -0.206 4.206 14 C 0.170 3.830 15 O -0.179 6.179 16 C -0.391 4.391 17 H 0.088 0.912 18 C 0.039 3.961 19 N -0.864 5.864 20 Si 0.939 3.061 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.271 1.271 24 C -0.264 4.264 25 C 0.144 3.856 26 C -0.097 4.097 27 H 0.074 0.926 28 C 0.066 3.934 29 N -0.850 5.850 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.401 0.599 38 H 0.145 0.855 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.270 0.730 42 H 0.127 0.873 43 H 0.061 0.939 44 H 0.105 0.895 45 H 0.034 0.966 46 H 0.072 0.928 47 H 0.343 0.657 48 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.202 20.028 -10.280 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.169 4.169 5 C -0.016 4.016 6 N -0.368 5.368 7 C 0.410 3.590 8 O -0.442 6.442 9 N -0.327 5.327 10 C 0.102 3.898 11 C -0.241 4.241 12 C -0.082 4.082 13 C -0.226 4.226 14 C 0.117 3.883 15 O -0.083 6.083 16 C -0.467 4.467 17 H 0.106 0.894 18 C -0.165 4.165 19 N -0.500 5.500 20 Si 0.764 3.236 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.196 1.196 24 C -0.286 4.286 25 C 0.021 3.979 26 C -0.117 4.117 27 H 0.093 0.907 28 C -0.065 4.065 29 N -0.380 5.380 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.238 0.762 38 H 0.163 0.837 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.145 0.855 43 H 0.079 0.921 44 H 0.123 0.877 45 H 0.052 0.948 46 H 0.090 0.910 47 H 0.155 0.845 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.989 19.526 -10.609 24.790 hybrid contribution -2.050 0.285 1.177 2.381 sum -13.038 19.811 -9.432 25.523 Atomic orbital electron populations 1.21910 0.95057 1.02007 1.01747 1.21111 0.95680 0.99511 0.94208 0.90857 1.21986 0.94925 1.01822 0.98121 1.21658 0.94543 0.99220 0.86144 1.47372 1.45288 1.36750 1.07420 1.15834 0.79657 0.79483 0.84059 1.90824 1.57166 1.65186 1.30989 1.42761 1.54672 1.27552 1.07753 1.17313 0.91474 0.85084 0.95879 1.21256 1.00877 1.01221 1.00764 1.20612 0.97480 0.93493 0.96639 1.20267 1.05484 1.02637 0.94162 1.19017 0.92588 0.88740 0.87993 1.84003 1.50371 1.45996 1.27892 1.21202 1.13542 1.08327 1.03660 0.89433 1.25253 0.98289 0.94833 0.98126 1.70030 1.37733 1.10156 1.32051 0.85822 0.79973 0.78252 0.79580 1.19638 1.20303 1.19602 1.20687 1.09387 0.97095 1.01428 1.21503 0.91900 0.98685 0.85777 1.21680 0.96060 1.00204 0.93711 0.90738 1.21860 0.97366 0.97625 0.89635 1.58664 1.68555 1.06577 1.04214 0.92536 0.92412 0.92647 0.91143 0.90464 0.90415 0.91143 0.76236 0.83719 0.86722 0.86561 0.92054 0.85548 0.92113 0.87655 0.94842 0.90957 0.84487 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.82 37.15 0.33 -0.56 16 2 C -0.09 -0.58 2.22 -90.58 -0.20 -0.78 16 3 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 4 C -0.13 -0.97 5.36 -26.61 -0.14 -1.11 16 5 C 0.11 0.94 6.42 -3.71 -0.02 0.91 16 6 N -0.63 -7.53 2.97 -178.23 -0.53 -8.06 16 7 C 0.71 11.43 8.20 -86.92 -0.71 10.72 16 8 O -0.56 -11.00 12.62 5.29 0.07 -10.94 16 9 N -0.68 -11.03 5.27 -14.24 -0.08 -11.10 16 10 C 0.20 3.95 6.46 -83.72 -0.54 3.40 16 11 C -0.22 -4.50 8.85 -39.35 -0.35 -4.85 16 12 C -0.06 -1.26 10.03 -39.64 -0.40 -1.66 16 13 C -0.21 -4.58 9.99 -39.36 -0.39 -4.97 16 14 C 0.17 4.24 6.64 -39.13 -0.26 3.98 16 15 O -0.18 -5.17 9.76 0.06 0.00 -5.17 16 16 C -0.39 -10.96 9.49 30.89 0.29 -10.66 16 17 H 0.09 2.25 5.23 -52.49 -0.27 1.98 16 18 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -25.53 13.67 55.48 0.76 -24.77 16 20 Si 0.94 20.44 29.55 -169.99 -5.02 15.42 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 C -0.26 -5.86 9.05 -39.21 -0.35 -6.21 16 25 C 0.14 1.54 5.55 -3.49 -0.02 1.52 16 26 C -0.10 -0.79 2.04 -90.27 -0.18 -0.98 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 C 0.07 0.44 5.93 -3.83 -0.02 0.42 16 29 N -0.85 -6.16 9.21 -10.37 -0.10 -6.25 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.30 6.29 -51.93 -0.33 -0.02 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.65 5.59 -51.93 -0.29 0.36 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.40 5.30 6.27 -40.82 -0.26 5.04 16 38 H 0.15 2.99 5.36 -52.49 -0.28 2.70 16 39 H 0.11 1.92 8.06 -52.49 -0.42 1.49 16 40 H 0.12 2.48 8.06 -52.49 -0.42 2.05 16 41 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.13 2.72 5.68 -52.49 -0.30 2.43 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.11 1.42 6.83 -51.93 -0.35 1.07 16 45 H 0.03 0.20 6.14 -51.93 -0.32 -0.12 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.34 2.45 8.99 -39.29 -0.35 2.09 16 48 H 0.34 1.85 9.08 -39.29 -0.36 1.50 16 LS Contribution 378.05 15.07 5.70 5.70 Total: -1.00 -33.68 378.05 -9.17 -42.85 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -6.90 Total: 12.17 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -3.08 Total: -9.84 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.06 Total: -50.19 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.07 Total: -16.10 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.68 -9.17 -42.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841049104.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.273 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds