Wall clock time and date at job start Tue Mar 31 2020 18:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.49693 * 2 1 4 4 C 1.53239 * 109.49633 * 120.05396 * 2 1 3 5 5 N 1.47079 * 108.52391 * 173.81393 * 4 2 1 6 6 C 1.34784 * 120.88043 * 128.83718 * 5 4 2 7 7 O 1.21585 * 119.99950 * 175.01757 * 6 5 4 8 8 N 1.34777 * 119.99604 * 355.01669 * 6 5 4 9 9 C 1.46507 * 119.99449 * 185.17028 * 8 6 5 10 10 C 1.50703 * 109.46678 * 180.02562 * 9 8 6 11 11 C 1.38305 * 119.92844 * 269.72576 * 10 9 8 12 12 C 1.38102 * 120.06648 * 179.73036 * 11 10 9 13 13 C 1.38879 * 119.92751 * 0.56568 * 12 11 10 14 14 O 1.35759 * 120.06388 * 179.68503 * 13 12 11 15 15 C 1.34823 * 116.99619 * 185.51849 * 14 13 12 16 16 H 1.08003 * 120.00371 * 354.94916 * 15 14 13 17 17 C 1.38658 * 120.00076 * 174.94755 * 15 14 13 18 18 N 1.31560 * 119.99736 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00139 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47166 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47024 * 120.00451 * 19 17 15 22 22 H 1.48502 * 109.47167 * 240.00158 * 19 17 15 23 23 C 1.38875 * 119.86741 * 359.70549 * 13 12 11 24 24 C 1.38098 * 119.92535 * 0.02562 * 23 13 12 25 25 C 1.47074 * 118.23849 * 308.81836 * 5 4 2 26 26 H 1.09004 * 109.62731 * 170.89098 * 25 5 4 27 27 C 1.52997 * 109.78817 * 291.37496 * 25 5 4 28 28 C 1.53237 * 108.52161 * 51.18442 * 25 5 4 29 29 N 1.46899 * 109.51596 * 239.93423 * 2 1 3 30 30 H 1.09001 * 109.47156 * 299.94335 * 1 2 3 31 31 H 1.08996 * 109.47513 * 59.94521 * 1 2 3 32 32 H 1.09002 * 109.46881 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.62757 * 293.52792 * 4 2 1 34 34 H 1.09004 * 109.62828 * 54.10818 * 4 2 1 35 35 H 0.96993 * 120.00374 * 5.16620 * 8 6 5 36 36 H 1.08999 * 109.46974 * 299.99598 * 9 8 6 37 37 H 1.08994 * 109.46869 * 60.00212 * 9 8 6 38 38 H 1.08002 * 119.96235 * 359.97438 * 11 10 9 39 39 H 1.08002 * 120.03293 * 180.26973 * 12 11 10 40 40 H 0.96997 * 120.00047 * 180.02562 * 18 17 15 41 41 H 1.07995 * 120.03863 * 180.02562 * 23 13 12 42 42 H 1.08000 * 119.96238 * 179.97438 * 24 23 13 43 43 H 1.09008 * 109.47152 * 179.12585 * 27 25 5 44 44 H 1.08994 * 109.47631 * 299.12938 * 27 25 5 45 45 H 1.09005 * 109.46825 * 59.13074 * 27 25 5 46 46 H 1.09002 * 109.49404 * 186.21162 * 28 25 5 47 47 H 1.08997 * 109.49454 * 66.13204 * 28 25 5 48 48 H 1.00906 * 110.99889 * 301.07104 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0414 -0.7234 1.2503 5 7 3.5043 -0.8424 1.1558 6 6 4.2975 -0.4482 2.1718 7 8 5.4973 -0.6367 2.1147 8 7 3.7605 0.1547 3.2509 9 6 4.6316 0.6846 4.3030 10 6 3.7890 1.3030 5.3887 11 6 3.4514 2.6425 5.3214 12 6 2.6747 3.2109 6.3118 13 6 2.2424 2.4386 7.3821 14 8 1.4842 2.9961 8.3605 15 6 1.1947 2.2224 9.4261 16 1 1.4926 1.1844 9.4367 17 6 0.5144 2.7595 10.5084 18 7 0.1511 4.0238 10.4953 19 14 0.1127 1.6874 11.9845 20 1 0.6249 0.3131 11.7522 21 1 0.7522 2.2562 13.1980 22 1 -1.3592 1.6406 12.1764 23 6 2.5878 1.0952 7.4497 24 6 3.3601 0.5315 6.4533 25 6 4.0787 -1.4031 -0.0766 26 1 5.1616 -1.2791 -0.0652 27 6 3.7328 -2.8900 -0.1794 28 6 3.4871 -0.6529 -1.2746 29 7 2.0207 -0.6937 -1.1983 30 1 -0.3633 0.5130 0.8905 31 1 -0.3634 0.5146 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7772 -0.1501 2.1388 34 1 1.5962 -1.7168 1.3064 35 1 2.7975 0.2379 3.3311 36 1 5.2277 -0.1254 4.7233 37 1 5.2929 1.4410 3.8805 38 1 3.7922 3.2437 4.4914 39 1 2.4077 4.2559 6.2565 40 1 -0.3245 4.3997 11.2526 41 1 2.2529 0.4921 8.2805 42 1 3.6294 -0.5131 6.5054 43 1 4.1476 -3.2966 -1.1018 44 1 4.1547 -3.4210 0.6738 45 1 2.6496 -3.0115 -0.1836 46 1 3.8165 -1.1268 -2.1993 47 1 3.8236 0.3837 -1.2569 48 1 1.6832 -1.6441 -1.2296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841783975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:15 Heat of formation + Delta-G solvation = -22.725067 kcal Electronic energy + Delta-G solvation = -28423.958304 eV Core-core repulsion = 24479.663710 eV Total energy + Delta-G solvation = -3944.294594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.81633 -39.23506 -38.45316 -36.87513 -34.73565 -34.19778 -33.22531 -32.34770 -30.31740 -30.05150 -29.28502 -26.68268 -26.01868 -25.54381 -24.65676 -22.25546 -22.07732 -21.32139 -20.65312 -19.48466 -18.50861 -18.09038 -17.04975 -16.50629 -15.90182 -15.56383 -15.40683 -15.10021 -14.79116 -14.69103 -14.59086 -14.18816 -14.04835 -13.79461 -13.69509 -13.59236 -13.24483 -12.81905 -12.74847 -12.63736 -12.52395 -12.31315 -12.08164 -11.96683 -11.70781 -11.54027 -11.41508 -11.39188 -11.16002 -10.99489 -10.79412 -10.71127 -10.49525 -10.16602 -9.51937 -9.44898 -8.96464 -8.93938 -8.34009 -8.30734 -7.35905 -6.55457 -4.14281 1.97797 2.10320 2.59566 3.06118 3.08024 3.13485 3.15503 3.75396 3.86702 3.88533 4.38306 4.49095 4.59501 4.60657 4.66098 4.76520 4.98754 5.00992 5.10582 5.12992 5.15204 5.21887 5.25200 5.31890 5.42003 5.42817 5.53648 5.59211 5.64448 5.68948 5.79490 5.82071 5.85156 5.90428 6.09522 6.27028 6.32859 6.54307 6.56883 6.58866 6.77175 6.80238 6.94554 6.97045 7.12812 7.25291 7.32711 7.68623 7.89336 7.91260 8.55663 8.90041 9.57998 10.62124 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018226 B = 0.002251 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.900352 B =12435.300359 C =12927.097648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.071 3.929 3 H 0.087 0.913 4 C 0.077 3.923 5 N -0.629 5.629 6 C 0.707 3.293 7 O -0.594 6.594 8 N -0.737 5.737 9 C 0.197 3.803 10 C -0.215 4.215 11 C -0.054 4.054 12 C -0.195 4.195 13 C 0.161 3.839 14 O -0.173 6.173 15 C -0.393 4.393 16 H 0.094 0.906 17 C 0.040 3.960 18 N -0.859 5.859 19 Si 0.942 3.058 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.237 4.237 24 C -0.050 4.050 25 C 0.115 3.885 26 H 0.104 0.896 27 C -0.161 4.161 28 C 0.050 3.950 29 N -0.678 5.678 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.396 0.604 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.271 0.729 41 H 0.128 0.872 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.053 0.947 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.183 -10.609 -20.500 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.040 4.040 3 H 0.105 0.895 4 C -0.049 4.049 5 N -0.367 5.367 6 C 0.408 3.592 7 O -0.473 6.473 8 N -0.394 5.394 9 C 0.074 3.926 10 C -0.216 4.216 11 C -0.072 4.072 12 C -0.214 4.214 13 C 0.106 3.894 14 O -0.076 6.076 15 C -0.469 4.469 16 H 0.111 0.889 17 C -0.165 4.165 18 N -0.493 5.493 19 Si 0.767 3.233 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.201 1.201 23 C -0.256 4.256 24 C -0.069 4.069 25 C 0.010 3.990 26 H 0.122 0.878 27 C -0.219 4.219 28 C -0.081 4.081 29 N -0.308 5.308 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.232 0.768 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.126 0.874 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.106 0.894 47 H 0.096 0.904 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.768 -9.767 -20.733 23.085 hybrid contribution -0.497 -1.192 1.677 2.117 sum 2.271 -10.959 -19.056 22.100 Atomic orbital electron populations 1.21771 0.93257 1.02352 1.02915 1.21945 0.95841 0.98775 0.87461 0.89483 1.22441 0.80829 1.01209 1.00395 1.47352 1.05634 1.67216 1.16511 1.15900 0.84965 0.78341 0.79964 1.90893 1.13225 1.62371 1.80792 1.45685 1.10519 1.62214 1.21017 1.19838 0.90661 0.97060 0.85024 1.19220 1.08898 0.94760 0.98743 1.20534 0.95931 0.93847 0.96928 1.20213 1.05354 0.99913 0.95966 1.19439 0.89044 0.91423 0.89499 1.83979 1.57518 1.40151 1.25924 1.21405 1.37865 0.94182 0.93469 0.88871 1.25325 0.96299 0.96498 0.98359 1.70044 1.35922 1.12164 1.31189 0.85628 0.78557 0.79226 0.79923 1.19044 1.20032 1.20063 1.21158 1.06530 0.95714 1.02230 1.20645 0.95238 0.98134 0.92859 1.21762 1.00561 0.92821 0.83885 0.87807 1.22099 1.01519 0.95654 1.02662 1.22428 0.87539 1.01323 0.96780 1.60689 1.09204 1.21682 1.39213 0.91502 0.91290 0.92532 0.89707 0.91391 0.76769 0.91736 0.91807 0.86981 0.86362 0.91907 0.85418 0.87436 0.91233 0.91994 0.92791 0.89371 0.90362 0.84068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.48 37.15 0.35 -0.55 16 2 C 0.07 0.52 3.17 -67.59 -0.21 0.31 16 3 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 4 C 0.08 0.63 5.46 -3.60 -0.02 0.61 16 5 N -0.63 -6.66 2.71 -170.62 -0.46 -7.12 16 6 C 0.71 9.93 8.31 -86.91 -0.72 9.21 16 7 O -0.59 -10.48 15.83 5.29 0.08 -10.40 16 8 N -0.74 -9.66 5.46 -66.41 -0.36 -10.03 16 9 C 0.20 2.83 5.80 -5.19 -0.03 2.80 16 10 C -0.21 -3.44 5.25 -104.57 -0.55 -3.99 16 11 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 12 C -0.20 -3.88 9.99 -39.39 -0.39 -4.28 16 13 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 14 O -0.17 -4.76 9.76 0.04 0.00 -4.76 16 15 C -0.39 -10.61 9.49 30.89 0.29 -10.32 16 16 H 0.09 2.33 5.20 -52.48 -0.27 2.05 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -24.52 13.67 55.48 0.76 -23.76 16 19 Si 0.94 19.92 29.55 -169.99 -5.02 14.90 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 23 C -0.24 -4.87 9.17 -39.40 -0.36 -5.23 16 24 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 25 C 0.12 1.04 3.20 -67.50 -0.22 0.83 16 26 H 0.10 1.14 7.10 -51.93 -0.37 0.78 16 27 C -0.16 -1.18 9.11 37.16 0.34 -0.84 16 28 C 0.05 0.37 6.15 -3.70 -0.02 0.34 16 29 N -0.68 -4.78 6.47 -106.46 -0.69 -5.47 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.70 5.64 -51.93 -0.29 0.41 16 34 H 0.07 0.51 7.62 -51.93 -0.40 0.12 16 35 H 0.40 4.66 5.96 -40.82 -0.24 4.41 16 36 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 37 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 40 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 42 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.35 6.13 -51.93 -0.32 0.03 16 46 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.34 2.06 7.22 -39.29 -0.28 1.78 16 LS Contribution 385.16 15.07 5.80 5.80 Total: -1.00 -31.36 385.16 -9.65 -41.01 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -7.10 Total: 9.04 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -2.67 Total: -9.22 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: -0.76 Total: -46.38 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: 0.08 Total: -15.16 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.36 -9.65 -41.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841783975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.286 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds