Wall clock time and date at job start Tue Mar 31 2020 18:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.49693 * 2 1 4 4 C 1.53239 * 109.49633 * 120.05396 * 2 1 3 5 5 N 1.47079 * 108.52391 * 173.81393 * 4 2 1 6 6 C 1.34784 * 120.88043 * 128.83718 * 5 4 2 7 7 O 1.21585 * 119.99950 * 175.01757 * 6 5 4 8 8 N 1.34777 * 119.99604 * 355.01669 * 6 5 4 9 9 C 1.46507 * 119.99449 * 185.17028 * 8 6 5 10 10 C 1.50703 * 109.46678 * 180.02562 * 9 8 6 11 11 C 1.38305 * 119.92844 * 269.72576 * 10 9 8 12 12 C 1.38102 * 120.06648 * 179.73036 * 11 10 9 13 13 C 1.38879 * 119.92751 * 0.56568 * 12 11 10 14 14 O 1.35759 * 120.06388 * 179.68503 * 13 12 11 15 15 C 1.34823 * 116.99619 * 185.51849 * 14 13 12 16 16 H 1.08003 * 120.00371 * 354.94916 * 15 14 13 17 17 C 1.38658 * 120.00076 * 174.94755 * 15 14 13 18 18 N 1.31560 * 119.99736 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00139 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47166 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47024 * 120.00451 * 19 17 15 22 22 H 1.48502 * 109.47167 * 240.00158 * 19 17 15 23 23 C 1.38875 * 119.86741 * 359.70549 * 13 12 11 24 24 C 1.38098 * 119.92535 * 0.02562 * 23 13 12 25 25 C 1.47074 * 118.23849 * 308.81836 * 5 4 2 26 26 H 1.09004 * 109.62731 * 170.89098 * 25 5 4 27 27 C 1.52997 * 109.78817 * 291.37496 * 25 5 4 28 28 C 1.53237 * 108.52161 * 51.18442 * 25 5 4 29 29 N 1.46899 * 109.51596 * 239.93423 * 2 1 3 30 30 H 1.09001 * 109.47156 * 299.94335 * 1 2 3 31 31 H 1.08996 * 109.47513 * 59.94521 * 1 2 3 32 32 H 1.09002 * 109.46881 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.62757 * 293.52792 * 4 2 1 34 34 H 1.09004 * 109.62828 * 54.10818 * 4 2 1 35 35 H 0.96993 * 120.00374 * 5.16620 * 8 6 5 36 36 H 1.08999 * 109.46974 * 299.99598 * 9 8 6 37 37 H 1.08994 * 109.46869 * 60.00212 * 9 8 6 38 38 H 1.08002 * 119.96235 * 359.97438 * 11 10 9 39 39 H 1.08002 * 120.03293 * 180.26973 * 12 11 10 40 40 H 0.96997 * 120.00047 * 180.02562 * 18 17 15 41 41 H 1.07995 * 120.03863 * 180.02562 * 23 13 12 42 42 H 1.08000 * 119.96238 * 179.97438 * 24 23 13 43 43 H 1.09008 * 109.47152 * 179.12585 * 27 25 5 44 44 H 1.08994 * 109.47631 * 299.12938 * 27 25 5 45 45 H 1.09005 * 109.46825 * 59.13074 * 27 25 5 46 46 H 1.09002 * 109.49404 * 186.21162 * 28 25 5 47 47 H 1.08997 * 109.49454 * 66.13204 * 28 25 5 48 48 H 1.00906 * 110.99889 * 301.07104 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0414 -0.7234 1.2503 5 7 3.5043 -0.8424 1.1558 6 6 4.2975 -0.4482 2.1718 7 8 5.4973 -0.6367 2.1147 8 7 3.7605 0.1547 3.2509 9 6 4.6316 0.6846 4.3030 10 6 3.7890 1.3030 5.3887 11 6 3.4514 2.6425 5.3214 12 6 2.6747 3.2109 6.3118 13 6 2.2424 2.4386 7.3821 14 8 1.4842 2.9961 8.3605 15 6 1.1947 2.2224 9.4261 16 1 1.4926 1.1844 9.4367 17 6 0.5144 2.7595 10.5084 18 7 0.1511 4.0238 10.4953 19 14 0.1127 1.6874 11.9845 20 1 0.6249 0.3131 11.7522 21 1 0.7522 2.2562 13.1980 22 1 -1.3592 1.6406 12.1764 23 6 2.5878 1.0952 7.4497 24 6 3.3601 0.5315 6.4533 25 6 4.0787 -1.4031 -0.0766 26 1 5.1616 -1.2791 -0.0652 27 6 3.7328 -2.8900 -0.1794 28 6 3.4871 -0.6529 -1.2746 29 7 2.0207 -0.6937 -1.1983 30 1 -0.3633 0.5130 0.8905 31 1 -0.3634 0.5146 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7772 -0.1501 2.1388 34 1 1.5962 -1.7168 1.3064 35 1 2.7975 0.2379 3.3311 36 1 5.2277 -0.1254 4.7233 37 1 5.2929 1.4410 3.8805 38 1 3.7922 3.2437 4.4914 39 1 2.4077 4.2559 6.2565 40 1 -0.3245 4.3997 11.2526 41 1 2.2529 0.4921 8.2805 42 1 3.6294 -0.5131 6.5054 43 1 4.1476 -3.2966 -1.1018 44 1 4.1547 -3.4210 0.6738 45 1 2.6496 -3.0115 -0.1836 46 1 3.8165 -1.1268 -2.1993 47 1 3.8236 0.3837 -1.2569 48 1 1.6832 -1.6441 -1.2296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841783975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:14 Heat of formation + Delta-G solvation = -44.047672 kcal Electronic energy + Delta-G solvation = -28424.882922 eV Core-core repulsion = 24479.663710 eV Total energy + Delta-G solvation = -3945.219211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.73703 -40.83357 -39.44845 -38.45767 -35.88767 -35.01202 -34.38265 -33.91461 -31.86039 -31.28848 -30.10611 -27.71472 -27.32076 -26.51658 -25.91515 -23.66453 -23.03469 -22.24518 -22.02575 -20.39774 -19.88709 -19.43425 -18.81472 -17.49371 -16.86759 -16.47254 -16.42044 -16.18004 -16.10923 -16.02926 -15.70223 -15.48436 -15.36278 -15.13280 -14.77702 -14.65003 -14.41377 -14.16801 -14.07253 -13.66280 -13.32391 -13.23172 -13.13655 -13.02967 -12.86336 -12.61925 -12.52072 -12.36589 -12.27426 -12.14222 -12.09547 -12.00436 -11.79248 -11.33102 -11.21567 -10.82559 -10.42003 -9.98183 -9.83014 -9.05640 -9.03868 -8.49381 -6.17455 0.49734 0.55676 1.35603 1.42035 1.53322 1.62173 2.07184 2.16130 2.70904 2.96022 3.16660 3.22049 3.47381 3.74120 3.82054 3.93224 3.97596 4.00445 4.02746 4.13574 4.15331 4.38261 4.43396 4.49979 4.53419 4.54949 4.67588 4.67709 4.74678 4.78931 4.88981 4.93711 4.98220 5.01912 5.13093 5.13246 5.22601 5.24331 5.35606 5.41276 5.48692 5.52850 5.67249 5.73355 5.86810 5.97533 6.00452 6.13509 6.45660 6.88982 6.95661 7.48571 7.74444 8.73600 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018226 B = 0.002251 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.900352 B =12435.300359 C =12927.097648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.076 3.924 3 H 0.072 0.928 4 C 0.075 3.925 5 N -0.624 5.624 6 C 0.702 3.298 7 O -0.634 6.634 8 N -0.732 5.732 9 C 0.203 3.797 10 C -0.183 4.183 11 C -0.042 4.042 12 C -0.203 4.203 13 C 0.124 3.876 14 O -0.228 6.228 15 C -0.413 4.413 16 H 0.104 0.896 17 C -0.021 4.021 18 N -0.918 5.918 19 Si 1.018 2.982 20 H -0.251 1.251 21 H -0.270 1.270 22 H -0.268 1.268 23 C -0.242 4.242 24 C -0.045 4.045 25 C 0.111 3.889 26 H 0.080 0.920 27 C -0.153 4.153 28 C 0.059 3.941 29 N -0.676 5.676 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.404 0.596 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.146 0.854 39 H 0.116 0.884 40 H 0.273 0.727 41 H 0.121 0.879 42 H 0.136 0.864 43 H 0.089 0.911 44 H 0.042 0.958 45 H 0.067 0.933 46 H 0.109 0.891 47 H 0.063 0.937 48 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.410 -12.975 -22.623 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.035 4.035 3 H 0.090 0.910 4 C -0.049 4.049 5 N -0.361 5.361 6 C 0.404 3.596 7 O -0.515 6.515 8 N -0.389 5.389 9 C 0.080 3.920 10 C -0.184 4.184 11 C -0.061 4.061 12 C -0.222 4.222 13 C 0.073 3.927 14 O -0.134 6.134 15 C -0.489 4.489 16 H 0.121 0.879 17 C -0.219 4.219 18 N -0.556 5.556 19 Si 0.837 3.163 20 H -0.174 1.174 21 H -0.195 1.195 22 H -0.193 1.193 23 C -0.262 4.262 24 C -0.063 4.063 25 C 0.006 3.994 26 H 0.099 0.901 27 C -0.211 4.211 28 C -0.072 4.072 29 N -0.307 5.307 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.242 0.758 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.164 0.836 39 H 0.134 0.866 40 H 0.082 0.918 41 H 0.138 0.862 42 H 0.154 0.846 43 H 0.108 0.892 44 H 0.061 0.939 45 H 0.085 0.915 46 H 0.127 0.873 47 H 0.082 0.918 48 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.985 -12.171 -22.932 26.132 hybrid contribution -0.370 -0.542 1.958 2.065 sum 2.615 -12.712 -20.974 24.665 Atomic orbital electron populations 1.21727 0.92090 1.03081 1.02885 1.21873 0.96611 0.97863 0.87145 0.90999 1.22618 0.79218 1.02176 1.00916 1.47433 1.06488 1.66170 1.16015 1.16034 0.84700 0.78345 0.80535 1.90869 1.15061 1.63974 1.81643 1.45439 1.10729 1.62109 1.20641 1.19714 0.90368 0.97212 0.84695 1.19464 1.06412 0.94310 0.98193 1.20859 0.94190 0.94388 0.96620 1.20437 1.05766 0.99989 0.95985 1.19979 0.90025 0.92943 0.89731 1.83951 1.60511 1.41540 1.27365 1.21864 1.38188 0.94795 0.94027 0.87921 1.26573 0.95996 0.97958 1.01390 1.70181 1.38368 1.14469 1.32591 0.84539 0.78510 0.77738 0.75513 1.17439 1.19501 1.19313 1.21226 1.07091 0.94816 1.03019 1.20912 0.93921 0.99595 0.91918 1.21916 0.99384 0.94279 0.83799 0.90129 1.22037 1.02345 0.93898 1.02844 1.22369 0.87630 1.00415 0.96793 1.60679 1.08814 1.22339 1.38858 0.91445 0.91449 0.91412 0.89696 0.89952 0.75810 0.91646 0.91269 0.83624 0.86550 0.91778 0.86159 0.84582 0.89233 0.93920 0.91453 0.87270 0.91806 0.83003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.48 71.98 0.68 -0.70 16 2 C 0.08 0.95 3.17 44.99 0.14 1.09 16 3 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 4 C 0.08 1.04 5.46 86.35 0.47 1.52 16 5 N -0.62 -12.05 2.71 -811.96 -2.20 -14.25 16 6 C 0.70 18.52 8.31 179.05 1.49 20.00 16 7 O -0.63 -21.70 15.83 -3.98 -0.06 -21.76 16 8 N -0.73 -17.29 5.46 -482.28 -2.63 -19.93 16 9 C 0.20 5.24 5.80 85.63 0.50 5.74 16 10 C -0.18 -5.33 5.25 -19.83 -0.10 -5.43 16 11 C -0.04 -1.30 9.69 22.25 0.22 -1.09 16 12 C -0.20 -8.05 9.99 22.39 0.22 -7.83 16 13 C 0.12 5.86 6.65 22.58 0.15 6.01 16 14 O -0.23 -13.20 9.76 -22.77 -0.22 -13.42 16 15 C -0.41 -23.26 9.49 67.92 0.64 -22.61 16 16 H 0.10 5.30 5.20 -2.91 -0.02 5.28 16 17 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 18 N -0.92 -55.12 13.67 21.61 0.30 -54.82 16 19 Si 1.02 41.74 29.55 68.60 2.03 43.76 16 20 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 21 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 22 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 23 C -0.24 -9.92 9.17 22.39 0.21 -9.71 16 24 C -0.04 -1.45 9.69 22.25 0.22 -1.23 16 25 C 0.11 1.82 3.20 44.96 0.14 1.97 16 26 H 0.08 1.73 7.10 -2.38 -0.02 1.71 16 27 C -0.15 -1.87 9.11 71.98 0.66 -1.21 16 28 C 0.06 0.73 6.15 86.38 0.53 1.26 16 29 N -0.68 -7.69 6.47 -490.74 -3.17 -10.86 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 1.18 5.64 -2.39 -0.01 1.17 16 34 H 0.08 0.96 7.62 -2.39 -0.02 0.94 16 35 H 0.40 8.34 5.96 -92.71 -0.55 7.79 16 36 H 0.07 1.75 8.08 -2.39 -0.02 1.73 16 37 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16 38 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 39 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 40 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 41 H 0.12 5.05 5.64 -2.91 -0.02 5.03 16 42 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 43 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 44 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.07 0.64 6.13 -2.38 -0.01 0.63 16 46 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.35 3.02 7.22 -89.69 -0.65 2.37 16 Total: -1.00 -72.56 385.16 0.45 -72.12 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: -0.21 Total: 32.09 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 6.63 Total: -12.93 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -7.71 Total: -99.86 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.29 Total: -35.19 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Total: -72.56 0.45 -72.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841783975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.069 kcal (2) G-P(sol) polarization free energy of solvation -72.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds