Wall clock time and date at job start Tue Mar 31 2020 17:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.51686 * 2 1 4 4 N 1.46900 * 109.49257 * 239.93024 * 2 1 3 5 5 C 1.46948 * 111.44090 * 177.02586 * 4 2 1 6 6 C 1.53242 * 109.31553 * 62.81154 * 5 4 2 7 7 N 1.47080 * 108.67996 * 306.47274 * 6 5 4 8 8 C 1.34776 * 120.87744 * 231.10881 * 7 6 5 9 9 O 1.21585 * 120.00160 * 175.28904 * 8 7 6 10 10 N 1.34782 * 120.00266 * 355.28602 * 8 7 6 11 11 C 1.46491 * 120.00223 * 184.96860 * 10 8 7 12 12 C 1.50700 * 109.47187 * 180.02562 * 11 10 8 13 13 C 1.38302 * 119.92903 * 269.72780 * 12 11 10 14 14 C 1.38105 * 120.06708 * 179.72352 * 13 12 11 15 15 C 1.38884 * 119.93011 * 0.54854 * 14 13 12 16 16 O 1.35749 * 120.06706 * 179.74905 * 15 14 13 17 17 C 1.34826 * 116.99664 * 185.48458 * 16 15 14 18 18 H 1.08009 * 120.00204 * 354.91831 * 17 16 15 19 19 C 1.38651 * 120.00089 * 174.91742 * 17 16 15 20 20 N 1.31562 * 119.99767 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00320 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47569 * 59.99695 * 21 19 17 23 23 H 1.48504 * 109.47357 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46798 * 299.99774 * 21 19 17 25 25 C 1.38877 * 119.85879 * 359.72151 * 15 14 13 26 26 C 1.38096 * 119.93726 * 0.02562 * 25 15 14 27 27 C 1.47072 * 118.23923 * 51.08142 * 7 6 5 28 28 H 1.08995 * 109.62999 * 68.72290 * 27 7 6 29 29 C 1.53000 * 109.62835 * 189.10649 * 27 7 6 30 30 H 1.09002 * 109.47440 * 299.93642 * 1 2 3 31 31 H 1.09003 * 109.46843 * 59.93003 * 1 2 3 32 32 H 1.08998 * 109.47516 * 179.97438 * 1 2 3 33 33 H 1.00902 * 111.00033 * 301.08697 * 4 2 1 34 34 H 1.08998 * 109.34475 * 302.95480 * 5 4 2 35 35 H 1.09007 * 109.67405 * 182.86363 * 5 4 2 36 36 H 1.08993 * 109.62918 * 186.65615 * 6 5 4 37 37 H 1.09007 * 109.62296 * 66.27445 * 6 5 4 38 38 H 0.97004 * 119.99246 * 4.97226 * 10 8 7 39 39 H 1.09005 * 109.47064 * 300.00116 * 11 10 8 40 40 H 1.09002 * 109.47227 * 59.99840 * 11 10 8 41 41 H 1.08000 * 119.96723 * 359.97438 * 13 12 11 42 42 H 1.08000 * 120.03483 * 180.26523 * 14 13 12 43 43 H 0.97003 * 119.99858 * 179.97438 * 20 19 17 44 44 H 1.08001 * 120.03284 * 180.02562 * 25 15 14 45 45 H 1.07998 * 119.97035 * 179.97438 * 26 25 15 46 46 H 1.09007 * 109.47054 * 54.89141 * 29 27 7 47 47 H 1.08999 * 109.47615 * 174.88622 * 29 27 7 48 48 H 1.09000 * 109.47035 * 294.89286 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 7 2.0202 -0.6939 -1.1984 5 6 3.4871 -0.6578 -1.2778 6 6 4.0781 -1.4042 -0.0770 7 7 3.5041 -0.8433 1.1555 8 6 4.2976 -0.4488 2.1709 9 8 3.8131 0.0912 3.1466 10 7 5.6283 -0.6528 2.1048 11 6 6.4776 -0.3240 3.2522 12 6 7.9130 -0.6431 2.9225 13 6 8.4235 -1.8971 3.2046 14 6 9.7369 -2.1945 2.8984 15 6 10.5486 -1.2290 2.3171 16 8 11.8415 -1.5167 2.0196 17 6 12.6046 -0.5032 1.5631 18 1 12.1610 0.4627 1.3710 19 6 13.9587 -0.7009 1.3404 20 7 14.4989 -1.8775 1.5740 21 14 15.0162 0.7035 0.7086 22 1 14.9723 1.8299 1.6752 23 1 16.4176 0.2372 0.5543 24 1 14.4991 1.1595 -0.6066 25 6 10.0346 0.0311 2.0403 26 6 8.7189 0.3206 2.3440 27 6 2.0413 -0.7238 1.2502 28 1 1.5959 -1.7168 1.3098 29 6 1.6711 0.0811 2.4975 30 1 -0.3634 0.5128 0.8905 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6823 -1.6441 -1.2297 34 1 3.8241 0.3787 -1.2635 35 1 3.8165 -1.1350 -2.2008 36 1 5.1610 -1.2807 -0.0660 37 1 3.8312 -2.4637 -0.1469 38 1 6.0235 -1.0173 1.2974 39 1 6.3850 0.7379 3.4804 40 1 6.1639 -0.9099 4.1162 41 1 7.7931 -2.6460 3.6610 42 1 10.1337 -3.1753 3.1149 43 1 15.4462 -2.0159 1.4178 44 1 10.6631 0.7839 1.5879 45 1 8.3187 1.3005 2.1293 46 1 2.1852 1.0421 2.4757 47 1 0.5938 0.2459 2.5172 48 1 1.9706 -0.4710 3.3884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841784367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:12 Heat of formation + Delta-G solvation = -7.499383 kcal Electronic energy + Delta-G solvation = -28397.373762 eV Core-core repulsion = 24453.739404 eV Total energy + Delta-G solvation = -3943.634359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.91435 -39.22471 -38.33950 -36.88592 -35.00784 -34.04653 -33.32309 -32.37017 -30.32554 -30.06633 -28.54788 -27.67289 -25.94322 -24.98751 -23.94011 -22.65223 -22.07906 -21.37692 -20.61177 -20.03919 -18.14481 -18.03466 -17.06018 -16.51115 -16.17580 -15.64193 -15.30425 -14.99671 -14.87298 -14.66581 -14.38644 -14.22829 -14.00182 -13.74814 -13.63406 -13.43365 -13.25210 -12.81329 -12.79286 -12.70777 -12.39403 -12.19592 -12.03772 -11.97877 -11.71016 -11.56063 -11.40211 -11.30251 -11.19219 -10.94917 -10.80649 -10.72227 -10.51948 -9.70380 -9.45632 -9.25671 -8.92898 -8.90705 -8.31897 -8.28650 -7.35608 -6.55001 -4.14068 1.98257 2.10225 2.59982 3.07339 3.08635 3.11489 3.16431 3.75217 3.87287 3.88980 4.38149 4.48991 4.62487 4.65834 4.70572 4.78728 4.98839 5.00066 5.12154 5.14726 5.20231 5.22969 5.29809 5.39158 5.42258 5.57702 5.61690 5.64517 5.68758 5.79044 5.79521 5.88791 6.02481 6.09136 6.16879 6.32721 6.45500 6.55759 6.58035 6.65235 6.77075 6.79693 6.93758 6.95862 7.12556 7.25194 7.32588 7.68630 7.89425 7.92880 8.59093 8.90145 9.57929 10.62331 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021559 B = 0.002134 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.445921 B =13114.837685 C =13664.705541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.085 0.915 4 N -0.680 5.680 5 C 0.044 3.956 6 C 0.071 3.929 7 N -0.632 5.632 8 C 0.705 3.295 9 O -0.586 6.586 10 N -0.739 5.739 11 C 0.198 3.802 12 C -0.215 4.215 13 C -0.054 4.054 14 C -0.196 4.196 15 C 0.160 3.840 16 O -0.173 6.173 17 C -0.394 4.394 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.237 4.237 26 C -0.050 4.050 27 C 0.130 3.870 28 H 0.066 0.934 29 C -0.133 4.133 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.340 0.660 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.394 0.606 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.272 0.728 44 H 0.128 0.872 45 H 0.108 0.892 46 H 0.070 0.930 47 H 0.044 0.956 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.302 1.475 -4.303 23.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.038 4.038 3 H 0.104 0.896 4 N -0.309 5.309 5 C -0.086 4.086 6 C -0.054 4.054 7 N -0.371 5.371 8 C 0.407 3.593 9 O -0.465 6.465 10 N -0.396 5.396 11 C 0.075 3.925 12 C -0.216 4.216 13 C -0.073 4.073 14 C -0.215 4.215 15 C 0.106 3.894 16 O -0.075 6.075 17 C -0.470 4.470 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.493 5.493 21 Si 0.767 3.233 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.256 4.256 26 C -0.069 4.069 27 C 0.024 3.976 28 H 0.083 0.917 29 C -0.190 4.190 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.158 0.842 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.231 0.769 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.130 0.870 42 H 0.136 0.864 43 H 0.082 0.918 44 H 0.146 0.854 45 H 0.126 0.874 46 H 0.089 0.911 47 H 0.062 0.938 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.327 2.093 -3.980 23.756 hybrid contribution 1.206 -0.207 -0.109 1.229 sum -22.121 1.886 -4.089 22.574 Atomic orbital electron populations 1.21810 0.93415 1.02250 1.02662 1.22045 0.95801 0.98757 0.87240 0.89646 1.60694 1.09066 1.21613 1.39502 1.22411 0.87676 1.01641 0.96891 1.22408 0.99429 0.97992 0.85569 1.47361 1.06120 1.67436 1.16177 1.15976 0.81397 0.79189 0.82717 1.90951 1.73187 1.48696 1.33625 1.45802 1.05149 1.69422 1.19238 1.19816 0.85720 1.00150 0.86834 1.19225 0.94770 0.95861 1.11774 1.20531 0.94103 0.95222 0.97412 1.20213 0.93916 0.99698 1.07673 1.19438 0.86064 0.92579 0.91356 1.83977 1.15847 1.36834 1.70859 1.21307 0.89942 0.91417 1.44338 0.88971 1.25322 0.96091 0.98130 0.96917 1.70029 1.13152 1.21862 1.44282 0.85761 0.78626 0.79598 0.79362 1.19403 1.20196 1.19434 1.21157 0.96403 0.98230 1.09854 1.20645 0.93088 0.97533 0.95603 1.21873 0.78609 0.99371 0.97699 0.91657 1.22157 0.98718 1.01686 0.96457 0.91441 0.91500 0.92598 0.84218 0.90301 0.89123 0.89610 0.91385 0.76937 0.91752 0.91866 0.87024 0.86388 0.91809 0.85423 0.87421 0.91101 0.93783 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.27 37.16 0.34 -0.54 16 2 C 0.07 0.57 2.64 -67.59 -0.18 0.40 16 3 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 4 N -0.68 -4.95 6.48 -106.42 -0.69 -5.64 16 5 C 0.04 0.32 6.72 -3.67 -0.02 0.29 16 6 C 0.07 0.57 6.51 -3.60 -0.02 0.55 16 7 N -0.63 -6.68 3.01 -170.61 -0.51 -7.20 16 8 C 0.71 9.58 8.21 -86.91 -0.71 8.87 16 9 O -0.59 -9.56 11.85 5.29 0.06 -9.50 16 10 N -0.74 -9.49 5.46 -66.42 -0.36 -9.85 16 11 C 0.20 2.80 5.80 -5.20 -0.03 2.77 16 12 C -0.21 -3.42 5.25 -104.57 -0.55 -3.97 16 13 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 14 C -0.20 -3.90 9.99 -39.39 -0.39 -4.30 16 15 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 16 O -0.17 -4.75 9.76 0.06 0.00 -4.75 16 17 C -0.39 -10.64 9.49 30.88 0.29 -10.35 16 18 H 0.09 2.29 5.20 -52.48 -0.27 2.02 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -24.52 13.67 55.48 0.76 -23.76 16 21 Si 0.94 19.91 29.55 -169.99 -5.02 14.89 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 C -0.24 -4.86 9.17 -39.40 -0.36 -5.22 16 26 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 27 C 0.13 1.21 3.08 -67.49 -0.21 1.01 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 C -0.13 -1.43 7.48 37.16 0.28 -1.15 16 30 H 0.07 0.40 6.55 -51.93 -0.34 0.06 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.34 2.08 8.78 -39.29 -0.34 1.73 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.68 5.73 -51.93 -0.30 0.38 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.39 4.58 6.00 -40.82 -0.24 4.33 16 39 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 40 H 0.06 0.90 8.08 -51.93 -0.42 0.49 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 43 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 45 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 46 H 0.07 0.92 6.89 -51.92 -0.36 0.56 16 47 H 0.04 0.37 6.46 -51.93 -0.34 0.04 16 48 H 0.08 0.99 6.66 -51.93 -0.35 0.65 16 LS Contribution 379.79 15.07 5.72 5.72 Total: -1.00 -30.68 379.79 -9.77 -40.45 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -7.04 Total: 9.40 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -2.69 Total: -9.77 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: -0.81 Total: -46.45 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.06 Total: -14.25 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.68 -9.77 -40.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841784367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.955 kcal (2) G-P(sol) polarization free energy of solvation -30.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds