Wall clock time and date at job start Tue Mar 31 2020 17:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.51686 * 2 1 4 4 N 1.46900 * 109.49257 * 239.93024 * 2 1 3 5 5 C 1.46948 * 111.44090 * 177.02586 * 4 2 1 6 6 C 1.53242 * 109.31553 * 62.81154 * 5 4 2 7 7 N 1.47080 * 108.67996 * 306.47274 * 6 5 4 8 8 C 1.34776 * 120.87744 * 231.10881 * 7 6 5 9 9 O 1.21585 * 120.00160 * 175.28904 * 8 7 6 10 10 N 1.34782 * 120.00266 * 355.28602 * 8 7 6 11 11 C 1.46491 * 120.00223 * 184.96860 * 10 8 7 12 12 C 1.50700 * 109.47187 * 180.02562 * 11 10 8 13 13 C 1.38302 * 119.92903 * 269.72780 * 12 11 10 14 14 C 1.38105 * 120.06708 * 179.72352 * 13 12 11 15 15 C 1.38884 * 119.93011 * 0.54854 * 14 13 12 16 16 O 1.35749 * 120.06706 * 179.74905 * 15 14 13 17 17 C 1.34826 * 116.99664 * 185.48458 * 16 15 14 18 18 H 1.08009 * 120.00204 * 354.91831 * 17 16 15 19 19 C 1.38651 * 120.00089 * 174.91742 * 17 16 15 20 20 N 1.31562 * 119.99767 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00320 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47569 * 59.99695 * 21 19 17 23 23 H 1.48504 * 109.47357 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46798 * 299.99774 * 21 19 17 25 25 C 1.38877 * 119.85879 * 359.72151 * 15 14 13 26 26 C 1.38096 * 119.93726 * 0.02562 * 25 15 14 27 27 C 1.47072 * 118.23923 * 51.08142 * 7 6 5 28 28 H 1.08995 * 109.62999 * 68.72290 * 27 7 6 29 29 C 1.53000 * 109.62835 * 189.10649 * 27 7 6 30 30 H 1.09002 * 109.47440 * 299.93642 * 1 2 3 31 31 H 1.09003 * 109.46843 * 59.93003 * 1 2 3 32 32 H 1.08998 * 109.47516 * 179.97438 * 1 2 3 33 33 H 1.00902 * 111.00033 * 301.08697 * 4 2 1 34 34 H 1.08998 * 109.34475 * 302.95480 * 5 4 2 35 35 H 1.09007 * 109.67405 * 182.86363 * 5 4 2 36 36 H 1.08993 * 109.62918 * 186.65615 * 6 5 4 37 37 H 1.09007 * 109.62296 * 66.27445 * 6 5 4 38 38 H 0.97004 * 119.99246 * 4.97226 * 10 8 7 39 39 H 1.09005 * 109.47064 * 300.00116 * 11 10 8 40 40 H 1.09002 * 109.47227 * 59.99840 * 11 10 8 41 41 H 1.08000 * 119.96723 * 359.97438 * 13 12 11 42 42 H 1.08000 * 120.03483 * 180.26523 * 14 13 12 43 43 H 0.97003 * 119.99858 * 179.97438 * 20 19 17 44 44 H 1.08001 * 120.03284 * 180.02562 * 25 15 14 45 45 H 1.07998 * 119.97035 * 179.97438 * 26 25 15 46 46 H 1.09007 * 109.47054 * 54.89141 * 29 27 7 47 47 H 1.08999 * 109.47615 * 174.88622 * 29 27 7 48 48 H 1.09000 * 109.47035 * 294.89286 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 7 2.0202 -0.6939 -1.1984 5 6 3.4871 -0.6578 -1.2778 6 6 4.0781 -1.4042 -0.0770 7 7 3.5041 -0.8433 1.1555 8 6 4.2976 -0.4488 2.1709 9 8 3.8131 0.0912 3.1466 10 7 5.6283 -0.6528 2.1048 11 6 6.4776 -0.3240 3.2522 12 6 7.9130 -0.6431 2.9225 13 6 8.4235 -1.8971 3.2046 14 6 9.7369 -2.1945 2.8984 15 6 10.5486 -1.2290 2.3171 16 8 11.8415 -1.5167 2.0196 17 6 12.6046 -0.5032 1.5631 18 1 12.1610 0.4627 1.3710 19 6 13.9587 -0.7009 1.3404 20 7 14.4989 -1.8775 1.5740 21 14 15.0162 0.7035 0.7086 22 1 14.9723 1.8299 1.6752 23 1 16.4176 0.2372 0.5543 24 1 14.4991 1.1595 -0.6066 25 6 10.0346 0.0311 2.0403 26 6 8.7189 0.3206 2.3440 27 6 2.0413 -0.7238 1.2502 28 1 1.5959 -1.7168 1.3098 29 6 1.6711 0.0811 2.4975 30 1 -0.3634 0.5128 0.8905 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6823 -1.6441 -1.2297 34 1 3.8241 0.3787 -1.2635 35 1 3.8165 -1.1350 -2.2008 36 1 5.1610 -1.2807 -0.0660 37 1 3.8312 -2.4637 -0.1469 38 1 6.0235 -1.0173 1.2974 39 1 6.3850 0.7379 3.4804 40 1 6.1639 -0.9099 4.1162 41 1 7.7931 -2.6460 3.6610 42 1 10.1337 -3.1753 3.1149 43 1 15.4462 -2.0159 1.4178 44 1 10.6631 0.7839 1.5879 45 1 8.3187 1.3005 2.1293 46 1 2.1852 1.0421 2.4757 47 1 0.5938 0.2459 2.5172 48 1 1.9706 -0.4710 3.3884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841784367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:10 Heat of formation + Delta-G solvation = -28.508063 kcal Electronic energy + Delta-G solvation = -28398.284767 eV Core-core repulsion = 24453.739404 eV Total energy + Delta-G solvation = -3944.545363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.82523 -40.83489 -39.30356 -38.43111 -36.08958 -34.94253 -34.32091 -34.04302 -31.86207 -31.39924 -29.41708 -28.32411 -27.64443 -26.36781 -24.87592 -23.66205 -23.33335 -22.33505 -21.89870 -21.00660 -19.88474 -19.09107 -18.72441 -17.49506 -17.06855 -16.49404 -16.41207 -16.25623 -16.10913 -15.89679 -15.66690 -15.53039 -15.31270 -14.90493 -14.76317 -14.70955 -14.37358 -14.11939 -13.88806 -13.67575 -13.52990 -13.32576 -13.06556 -13.01348 -12.83479 -12.64654 -12.50771 -12.39219 -12.28573 -12.18868 -12.13106 -11.95169 -11.83519 -11.21958 -10.82892 -10.60595 -10.22584 -9.93332 -9.82591 -9.04467 -8.99678 -8.48920 -6.17229 0.50612 0.55794 1.35455 1.44502 1.51177 1.64869 2.12609 2.16599 2.72126 2.98149 3.17106 3.21832 3.47661 3.71325 3.83386 3.98121 4.00243 4.01860 4.02331 4.15541 4.17272 4.36710 4.44583 4.46169 4.54657 4.55019 4.68862 4.72460 4.79348 4.80359 4.94452 5.00328 5.02249 5.09591 5.13010 5.14521 5.24539 5.24890 5.39037 5.50158 5.53087 5.65297 5.67548 5.73838 5.89149 5.96464 6.00278 6.13975 6.44355 6.93812 6.95756 7.56292 7.74454 8.73469 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021559 B = 0.002134 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.445921 B =13114.837685 C =13664.705541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.081 3.919 3 H 0.065 0.935 4 N -0.680 5.680 5 C 0.049 3.951 6 C 0.069 3.931 7 N -0.630 5.630 8 C 0.700 3.300 9 O -0.617 6.617 10 N -0.734 5.734 11 C 0.205 3.795 12 C -0.182 4.182 13 C -0.042 4.042 14 C -0.204 4.204 15 C 0.123 3.877 16 O -0.228 6.228 17 C -0.414 4.414 18 H 0.103 0.897 19 C -0.022 4.022 20 N -0.918 5.918 21 Si 1.017 2.983 22 H -0.259 1.259 23 H -0.273 1.273 24 H -0.256 1.256 25 C -0.243 4.243 26 C -0.045 4.045 27 C 0.128 3.872 28 H 0.079 0.921 29 C -0.123 4.123 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.350 0.650 34 H 0.064 0.936 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.402 0.598 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.146 0.854 42 H 0.116 0.884 43 H 0.273 0.727 44 H 0.121 0.879 45 H 0.136 0.864 46 H 0.044 0.956 47 H 0.066 0.934 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.213 2.130 -5.151 26.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 H 0.084 0.916 4 N -0.310 5.310 5 C -0.082 4.082 6 C -0.055 4.055 7 N -0.368 5.368 8 C 0.402 3.598 9 O -0.498 6.498 10 N -0.392 5.392 11 C 0.082 3.918 12 C -0.183 4.183 13 C -0.061 4.061 14 C -0.223 4.223 15 C 0.072 3.928 16 O -0.134 6.134 17 C -0.490 4.490 18 H 0.121 0.879 19 C -0.219 4.219 20 N -0.556 5.556 21 Si 0.836 3.164 22 H -0.183 1.183 23 H -0.197 1.197 24 H -0.180 1.180 25 C -0.262 4.262 26 C -0.064 4.064 27 C 0.023 3.977 28 H 0.097 0.903 29 C -0.180 4.180 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.169 0.831 34 H 0.082 0.918 35 H 0.128 0.872 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.240 0.760 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.164 0.836 42 H 0.134 0.866 43 H 0.082 0.918 44 H 0.139 0.861 45 H 0.154 0.846 46 H 0.063 0.937 47 H 0.085 0.915 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -26.316 2.741 -4.856 26.900 hybrid contribution 1.678 -0.424 0.243 1.748 sum -24.637 2.317 -4.613 25.172 Atomic orbital electron populations 1.21778 0.91881 1.03129 1.02857 1.21929 0.96897 0.97496 0.86739 0.91648 1.60682 1.09107 1.22334 1.38852 1.22400 0.87589 1.00864 0.97327 1.22598 0.99482 0.98851 0.84562 1.47449 1.06481 1.66624 1.16217 1.16125 0.81548 0.79160 0.83005 1.90951 1.73714 1.50059 1.35080 1.45563 1.04999 1.69551 1.19109 1.19679 0.84271 1.00391 0.87499 1.19486 0.95555 0.94924 1.08375 1.20859 0.92881 0.96247 0.96103 1.20443 0.95006 0.99280 1.07558 1.19984 0.85346 0.94510 0.92927 1.83947 1.17836 1.37799 1.73777 1.21784 0.90656 0.92003 1.44575 0.87940 1.26579 0.97259 1.01019 0.97090 1.70173 1.13526 1.24497 1.47355 0.84664 0.76455 0.76024 0.79214 1.18290 1.19728 1.18047 1.21235 0.97762 0.97214 1.09999 1.20917 0.91680 0.99105 0.94661 1.22017 0.77999 0.99967 0.97692 0.90300 1.21979 0.99815 1.00095 0.96157 0.91188 0.91397 0.91348 0.83059 0.91787 0.87185 0.89493 0.89731 0.76047 0.91693 0.91288 0.83624 0.86598 0.91784 0.86144 0.84582 0.93666 0.91512 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.27 71.98 0.67 -0.69 16 2 C 0.08 1.11 2.64 45.00 0.12 1.22 16 3 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 4 N -0.68 -8.03 6.48 -490.60 -3.18 -11.21 16 5 C 0.05 0.57 6.72 86.38 0.58 1.15 16 6 C 0.07 0.91 6.51 86.35 0.56 1.47 16 7 N -0.63 -11.96 3.01 -811.97 -2.45 -14.40 16 8 C 0.70 17.67 8.21 179.05 1.47 19.14 16 9 O -0.62 -19.47 11.85 -3.99 -0.05 -19.51 16 10 N -0.73 -16.86 5.46 -482.30 -2.63 -19.49 16 11 C 0.21 5.16 5.80 85.63 0.50 5.66 16 12 C -0.18 -5.28 5.25 -19.83 -0.10 -5.38 16 13 C -0.04 -1.31 9.69 22.25 0.22 -1.10 16 14 C -0.20 -8.11 9.99 22.39 0.22 -7.88 16 15 C 0.12 5.83 6.65 22.58 0.15 5.98 16 16 O -0.23 -13.23 9.76 -22.69 -0.22 -13.45 16 17 C -0.41 -23.38 9.49 67.92 0.64 -22.73 16 18 H 0.10 5.27 5.20 -2.91 -0.02 5.26 16 19 C -0.02 -1.19 5.49 84.83 0.47 -0.73 16 20 N -0.92 -55.15 13.67 21.61 0.30 -54.85 16 21 Si 1.02 41.75 29.55 68.60 2.03 43.78 16 22 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 25 C -0.24 -9.95 9.17 22.39 0.21 -9.74 16 26 C -0.05 -1.45 9.69 22.25 0.22 -1.23 16 27 C 0.13 2.13 3.08 44.96 0.14 2.26 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 29 C -0.12 -2.51 7.48 71.98 0.54 -1.97 16 30 H 0.07 0.65 6.55 -2.39 -0.02 0.64 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.35 3.08 8.78 -89.69 -0.79 2.30 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 35 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.09 1.12 5.73 -2.39 -0.01 1.11 16 37 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.40 8.11 6.00 -92.71 -0.56 7.55 16 39 H 0.06 1.70 8.08 -2.38 -0.02 1.68 16 40 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 41 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 42 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 43 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 44 H 0.12 5.05 5.64 -2.91 -0.02 5.03 16 45 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 46 H 0.04 1.15 6.89 -2.38 -0.02 1.14 16 47 H 0.07 1.02 6.46 -2.39 -0.02 1.00 16 48 H 0.05 1.30 6.66 -2.39 -0.02 1.29 16 Total: -1.00 -71.37 379.79 0.04 -71.33 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: -0.35 Total: 32.36 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 6.59 Total: -14.56 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -7.96 Total: -99.96 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.27 Total: -32.96 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -71.37 0.04 -71.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841784367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.827 kcal (2) G-P(sol) polarization free energy of solvation -71.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds