Wall clock time and date at job start Tue Mar 31 2020 18:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47097 * 2 1 4 4 N 1.46496 * 109.47181 * 120.00351 * 2 1 3 5 5 C 1.34777 * 119.99740 * 275.00030 * 4 2 1 6 6 O 1.21585 * 120.00236 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00234 * 180.02562 * 5 4 2 8 8 C 1.46500 * 120.00448 * 179.97438 * 7 5 4 9 9 C 1.53043 * 109.45923 * 275.03027 * 8 7 5 10 10 C 1.53192 * 109.31392 * 178.59923 * 9 8 7 11 11 N 1.46934 * 108.76367 * 54.65054 * 10 9 8 12 12 C 1.36937 * 120.62900 * 126.36438 * 11 10 9 13 13 H 1.08005 * 120.00113 * 331.86037 * 12 11 10 14 14 C 1.38806 * 119.99958 * 151.85670 * 12 11 10 15 15 N 1.31621 * 120.00109 * 343.07499 * 14 12 11 16 16 Si 1.86802 * 120.00094 * 163.07344 * 14 12 11 17 17 H 1.48502 * 109.47121 * 59.99963 * 16 14 12 18 18 H 1.48497 * 109.47345 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46856 * 300.00532 * 16 14 12 20 20 C 1.46924 * 118.73895 * 306.38750 * 11 10 9 21 21 C 1.53042 * 109.46252 * 154.97160 * 8 7 5 22 22 C 1.50701 * 109.46907 * 239.99791 * 2 1 3 23 23 C 1.38161 * 120.03178 * 264.72733 * 22 2 1 24 24 C 1.38244 * 120.05830 * 179.76793 * 23 22 2 25 25 C 1.38294 * 120.11005 * 0.50919 * 24 23 22 26 26 C 1.38118 * 120.05418 * 359.73984 * 25 24 23 27 27 C 1.38712 * 120.02613 * 84.99782 * 22 2 1 28 28 O 1.35904 * 120.05725 * 0.02562 * 27 22 2 29 29 H 1.09001 * 109.47564 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46809 * 300.00161 * 1 2 3 31 31 H 1.09003 * 109.47047 * 59.99668 * 1 2 3 32 32 H 0.96998 * 120.00541 * 94.99672 * 4 2 1 33 33 H 0.97004 * 119.99946 * 0.27363 * 7 5 4 34 34 H 1.09004 * 109.45860 * 34.99502 * 8 7 5 35 35 H 1.09005 * 109.49606 * 298.56164 * 9 8 7 36 36 H 1.08997 * 109.50178 * 58.65791 * 9 8 7 37 37 H 1.09004 * 109.59834 * 294.86908 * 10 9 8 38 38 H 1.09000 * 109.70667 * 174.50206 * 10 9 8 39 39 H 0.97004 * 119.99730 * 179.97438 * 15 14 12 40 40 H 1.09001 * 109.58311 * 293.82192 * 20 11 10 41 41 H 1.09000 * 109.70327 * 173.46407 * 20 11 10 42 42 H 1.08990 * 109.49318 * 301.33895 * 21 8 7 43 43 H 1.09003 * 109.49412 * 61.40467 * 21 8 7 44 44 H 1.07999 * 119.96892 * 0.02562 * 23 22 2 45 45 H 1.08001 * 119.94683 * 180.24808 * 24 23 22 46 46 H 1.07996 * 119.97127 * 179.76788 * 25 24 23 47 47 H 1.08001 * 120.02951 * 180.02562 * 26 25 24 48 48 H 0.96693 * 114.00306 * 89.99174 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8583 1.1615 2.4116 7 7 2.5968 -0.6535 3.4574 8 6 2.7372 0.0774 4.7193 9 6 4.0943 0.7843 4.7507 10 6 4.2232 1.5757 6.0560 11 7 3.9908 0.6653 7.1857 12 6 4.9072 0.5615 8.1979 13 1 5.9519 0.7537 8.0024 14 6 4.4935 0.2093 9.4752 15 7 3.2219 0.2984 9.8031 16 14 5.7414 -0.3913 10.7288 17 1 6.7588 0.6655 10.9599 18 1 5.0502 -0.7014 12.0060 19 1 6.4073 -1.6159 10.2168 20 6 2.7568 -0.1318 7.2083 21 6 2.6443 -0.9039 5.8900 22 6 2.0323 -0.7105 -1.2305 23 6 2.3664 -2.0496 -1.1677 24 6 2.8227 -2.7031 -2.2973 25 6 2.9559 -2.0160 -3.4901 26 6 2.6281 -0.6759 -3.5567 27 6 2.1649 -0.0191 -2.4257 28 8 1.8427 1.2997 -2.4885 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.2490 -1.6318 1.1526 33 1 2.8316 -1.5936 3.4128 34 1 1.9407 0.8170 4.8011 35 1 4.8918 0.0433 4.6940 36 1 4.1693 1.4657 3.9033 37 1 3.4829 2.3756 6.0732 38 1 5.2236 2.0020 6.1301 39 1 2.9328 0.0519 10.6956 40 1 1.8971 0.5289 7.3194 41 1 2.7882 -0.8340 8.0414 42 1 1.6871 -1.4240 5.8535 43 1 3.4553 -1.6290 5.8221 44 1 2.2671 -2.5874 -0.2364 45 1 3.0795 -3.7509 -2.2472 46 1 3.3161 -2.5278 -4.3702 47 1 2.7319 -0.1398 -4.4885 48 1 2.5791 1.8944 -2.2913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868226231.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:25 Heat of formation + Delta-G solvation = -25.169334 kcal Electronic energy + Delta-G solvation = -28542.883366 eV Core-core repulsion = 24598.482781 eV Total energy + Delta-G solvation = -3944.400585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.70063 -39.69467 -37.58577 -37.00880 -35.66568 -34.30460 -32.39890 -31.34422 -30.54161 -30.01945 -29.38299 -28.84514 -25.08082 -24.16067 -23.17719 -22.29981 -22.04188 -21.06768 -20.41673 -19.47234 -18.87991 -18.01454 -17.08511 -16.59951 -16.10743 -15.81580 -15.46330 -15.18111 -14.82456 -14.49634 -14.31071 -14.26697 -13.75415 -13.72400 -13.51771 -13.28458 -12.94592 -12.77482 -12.56209 -12.41075 -12.28980 -12.14711 -12.05529 -11.43540 -11.33370 -11.09742 -10.83174 -10.75029 -10.70464 -10.48048 -10.25650 -10.02474 -9.99311 -9.73204 -9.53114 -9.35159 -9.20374 -8.93220 -8.58855 -8.42064 -6.66718 -5.78251 -3.20392 0.82334 0.88752 2.76984 3.21018 3.38855 3.38918 3.44555 3.45653 3.84623 4.24028 4.32253 4.44272 4.50491 4.62113 4.91818 5.02362 5.14161 5.17991 5.35569 5.39498 5.42999 5.49083 5.53448 5.62147 5.63988 5.71603 5.92437 5.93587 6.00701 6.05188 6.09787 6.10990 6.31548 6.38149 6.38979 6.49219 6.53158 6.60511 6.63850 6.82791 6.92486 7.01435 7.12949 7.28961 7.33892 7.63635 7.80123 8.15697 8.46062 8.77521 9.22156 9.85444 10.42756 11.30669 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026351 B = 0.002118 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.310300 B =13214.000082 C =13470.611625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.209 3.791 3 H 0.098 0.902 4 N -0.750 5.750 5 C 0.703 3.297 6 O -0.589 6.589 7 N -0.739 5.739 8 C 0.169 3.831 9 C -0.139 4.139 10 C 0.148 3.852 11 N -0.593 5.593 12 C -0.252 4.252 13 H 0.065 0.935 14 C 0.001 3.999 15 N -0.903 5.903 16 Si 0.903 3.097 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.284 1.284 20 C 0.175 3.825 21 C -0.146 4.146 22 C -0.112 4.112 23 C -0.101 4.101 24 C -0.124 4.124 25 C -0.107 4.107 26 C -0.142 4.142 27 C 0.116 3.884 28 O -0.495 6.495 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.391 0.609 33 H 0.390 0.610 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.020 0.980 38 H 0.055 0.945 39 H 0.254 0.746 40 H 0.021 0.979 41 H 0.091 0.909 42 H 0.053 0.947 43 H 0.058 0.942 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.130 0.870 48 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.327 -6.804 -26.448 27.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.104 3.896 3 H 0.116 0.884 4 N -0.408 5.408 5 C 0.403 3.597 6 O -0.466 6.466 7 N -0.392 5.392 8 C 0.065 3.935 9 C -0.179 4.179 10 C 0.021 3.979 11 N -0.316 5.316 12 C -0.382 4.382 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.548 5.548 16 Si 0.733 3.267 17 H -0.209 1.209 18 H -0.217 1.217 19 H -0.211 1.211 20 C 0.048 3.952 21 C -0.186 4.186 22 C -0.113 4.113 23 C -0.120 4.120 24 C -0.142 4.142 25 C -0.125 4.125 26 C -0.160 4.160 27 C 0.071 3.929 28 O -0.306 6.306 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.227 0.773 33 H 0.223 0.777 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.039 0.961 41 H 0.109 0.891 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.145 0.855 47 H 0.148 0.852 48 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.231 -5.910 -26.322 27.171 hybrid contribution 1.284 -1.123 0.664 1.831 sum -1.947 -7.033 -25.658 26.676 Atomic orbital electron populations 1.22138 0.94074 1.02068 1.03043 1.19368 0.94084 0.96291 0.79883 0.88409 1.45382 1.72766 1.13545 1.09073 1.15992 0.78271 0.85199 0.80233 1.90918 1.57138 1.14223 1.84370 1.45554 1.70286 1.13631 1.09756 1.20910 0.98192 0.94102 0.80276 1.22389 0.96502 0.99689 0.99361 1.20880 0.98929 0.91605 0.86527 1.44087 1.21504 1.44247 1.21716 1.19146 0.88620 1.43028 0.87364 0.91722 1.25055 0.96105 1.01815 0.96727 1.70020 1.14343 1.50774 1.19651 0.86364 0.80709 0.79033 0.80619 1.20881 1.21653 1.21090 1.20735 0.87908 0.93841 0.92708 1.22541 1.00341 0.98435 0.97279 1.20348 1.01130 0.95065 0.94757 1.20812 0.99024 0.93423 0.98711 1.21166 1.00034 1.00221 0.92740 1.21062 0.99400 0.93921 0.98133 1.21434 1.00395 0.95656 0.98548 1.18189 0.98113 0.84709 0.91933 1.84830 1.39793 1.13419 1.92514 0.92703 0.91353 0.91280 0.77313 0.77721 0.90044 0.92518 0.92742 0.96158 0.92629 0.93558 0.96087 0.89063 0.92793 0.92278 0.85771 0.85559 0.85547 0.85240 0.75047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.47 37.16 0.35 -1.30 16 2 C 0.21 2.24 2.51 -69.08 -0.17 2.07 16 3 H 0.10 1.22 7.12 -51.93 -0.37 0.85 16 4 N -0.75 -8.22 5.00 -59.82 -0.30 -8.52 16 5 C 0.70 10.54 8.50 -86.92 -0.74 9.80 16 6 O -0.59 -11.27 15.67 5.29 0.08 -11.19 16 7 N -0.74 -10.49 5.08 -58.63 -0.30 -10.79 16 8 C 0.17 2.98 2.42 -67.89 -0.16 2.82 16 9 C -0.14 -2.59 5.65 -26.61 -0.15 -2.74 16 10 C 0.15 3.22 6.52 -3.71 -0.02 3.19 16 11 N -0.59 -14.89 2.99 -172.32 -0.52 -15.41 16 12 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 13 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 14 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 15 N -0.90 -26.12 11.19 55.49 0.62 -25.50 16 16 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 C 0.17 4.11 5.30 -3.71 -0.02 4.09 16 21 C -0.15 -2.68 5.55 -26.61 -0.15 -2.82 16 22 C -0.11 -1.02 5.07 -104.47 -0.53 -1.54 16 23 C -0.10 -0.77 9.24 -39.61 -0.37 -1.14 16 24 C -0.12 -0.82 10.04 -39.56 -0.40 -1.22 16 25 C -0.11 -0.70 10.04 -39.60 -0.40 -1.10 16 26 C -0.14 -1.05 9.99 -39.43 -0.39 -1.45 16 27 C 0.12 1.01 6.68 -39.21 -0.26 0.75 16 28 O -0.49 -4.11 12.64 -19.44 -0.25 -4.36 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.39 3.23 6.21 -40.82 -0.25 2.98 16 33 H 0.39 4.39 8.62 -40.82 -0.35 4.04 16 34 H 0.08 1.64 7.58 -51.93 -0.39 1.24 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.09 2.38 6.06 -51.93 -0.31 2.07 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.12 0.75 6.06 -52.49 -0.32 0.43 16 45 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 46 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 47 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 48 H 0.39 1.78 9.06 45.56 0.41 2.19 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -33.55 387.25 -10.11 -43.67 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.62 Total: 7.40 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -3.64 Total: 2.32 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.49 Total: -60.21 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.16 Total: -15.55 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.55 -10.11 -43.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868226231.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.496 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds