Wall clock time and date at job start Tue Mar 31 2020 18:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46807 * 2 1 4 4 N 1.46500 * 109.47250 * 240.00599 * 2 1 3 5 5 C 1.34772 * 120.00334 * 88.22023 * 4 2 1 6 6 O 1.21589 * 120.00058 * 359.97438 * 5 4 2 7 7 N 1.34783 * 120.00321 * 179.97438 * 5 4 2 8 8 C 1.46490 * 120.00119 * 180.02562 * 7 5 4 9 9 C 1.53040 * 109.46195 * 275.02824 * 8 7 5 10 10 C 1.53196 * 109.31536 * 178.60300 * 9 8 7 11 11 N 1.46924 * 108.76496 * 54.65252 * 10 9 8 12 12 C 1.36933 * 120.62559 * 126.36164 * 11 10 9 13 13 H 1.07997 * 120.00920 * 329.00633 * 12 11 10 14 14 C 1.38817 * 119.99750 * 149.00744 * 12 11 10 15 15 N 1.31620 * 119.99710 * 348.81940 * 14 12 11 16 16 Si 1.86801 * 120.00181 * 168.81587 * 14 12 11 17 17 H 1.48493 * 109.47020 * 60.00052 * 16 14 12 18 18 H 1.48495 * 109.47051 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47136 * 300.00251 * 16 14 12 20 20 C 1.46920 * 118.74144 * 306.38898 * 11 10 9 21 21 C 1.53040 * 109.46252 * 154.97611 * 8 7 5 22 22 C 1.50693 * 109.47462 * 119.99991 * 2 1 3 23 23 C 1.38172 * 120.02647 * 92.24756 * 22 2 1 24 24 C 1.38245 * 120.05118 * 180.02562 * 23 22 2 25 25 C 1.38281 * 120.11521 * 0.02562 * 24 23 22 26 26 C 1.38121 * 120.05859 * 359.97438 * 25 24 23 27 27 C 1.38712 * 120.03011 * 272.27104 * 22 2 1 28 28 O 1.35898 * 120.05328 * 359.95549 * 27 22 2 29 29 H 1.08998 * 109.47552 * 299.99318 * 1 2 3 30 30 H 1.09005 * 109.47367 * 60.00243 * 1 2 3 31 31 H 1.09006 * 109.46807 * 180.02562 * 1 2 3 32 32 H 0.96997 * 119.99925 * 268.22217 * 4 2 1 33 33 H 0.96996 * 119.99446 * 359.97438 * 7 5 4 34 34 H 1.09001 * 109.46330 * 35.00132 * 8 7 5 35 35 H 1.09003 * 109.49937 * 298.56605 * 9 8 7 36 36 H 1.09005 * 109.49825 * 58.66433 * 9 8 7 37 37 H 1.09002 * 109.59340 * 294.86892 * 10 9 8 38 38 H 1.09002 * 109.70066 * 174.50640 * 10 9 8 39 39 H 0.97008 * 119.99426 * 180.02562 * 15 14 12 40 40 H 1.09005 * 109.58507 * 293.82241 * 20 11 10 41 41 H 1.08998 * 109.70930 * 173.46530 * 20 11 10 42 42 H 1.09004 * 109.49412 * 301.33814 * 21 8 7 43 43 H 1.08998 * 109.49643 * 61.39485 * 21 8 7 44 44 H 1.07998 * 119.97233 * 359.74196 * 23 22 2 45 45 H 1.08004 * 119.94103 * 179.97438 * 24 23 22 46 46 H 1.07999 * 119.97254 * 180.02562 * 25 24 23 47 47 H 1.07994 * 120.03035 * 180.02562 * 26 25 24 48 48 H 0.96700 * 114.00158 * 90.00113 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.2088 -0.0038 -2.3402 6 8 1.9749 1.1887 -2.3795 7 7 2.6586 -0.6390 -3.4406 8 6 2.8662 0.1075 -4.6838 9 6 1.5457 0.1953 -5.4523 10 6 1.7586 1.0063 -6.7345 11 7 2.8613 0.4047 -7.4966 12 6 2.6906 0.0496 -8.8081 13 1 1.7207 -0.2705 -9.1591 14 6 3.7643 0.1010 -9.6864 15 7 4.8826 0.6933 -9.3247 16 14 3.6220 -0.6705 -11.3817 17 1 2.5154 -0.0215 -12.1296 18 1 4.8965 -0.4817 -12.1200 19 1 3.3412 -2.1221 -11.2430 20 6 4.1503 0.1908 -6.8248 21 6 3.9104 -0.6107 -5.5416 22 6 2.0324 -0.7104 1.2304 23 6 2.3071 -2.0637 1.1837 24 6 2.7675 -2.7160 2.3123 25 6 2.9538 -2.0165 3.4905 26 6 2.6806 -0.6635 3.5424 27 6 2.2190 -0.0063 2.4109 28 8 1.9499 1.3249 2.4592 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.2046 -1.6419 -1.1650 33 1 2.8456 -1.5902 -3.4090 34 1 3.2176 1.1125 -4.4497 35 1 1.2065 -0.8083 -5.7087 36 1 0.7956 0.6861 -4.8321 37 1 2.0102 2.0355 -6.4785 38 1 0.8486 0.9910 -7.3344 39 1 5.6328 0.7296 -9.9387 40 1 4.5969 1.1535 -6.5762 41 1 4.8199 -0.3637 -7.4822 42 1 4.8438 -0.6938 -4.9847 43 1 3.5490 -1.6069 -5.7964 44 1 2.1577 -2.6132 0.2660 45 1 2.9813 -3.7739 2.2739 46 1 3.3140 -2.5283 4.3706 47 1 2.8266 -0.1176 4.4626 48 1 1.0396 1.5333 2.7103 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868226232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:27 Heat of formation + Delta-G solvation = -50.529327 kcal Electronic energy + Delta-G solvation = -28522.909712 eV Core-core repulsion = 24577.409435 eV Total energy + Delta-G solvation = -3945.500277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.56288 -40.68105 -39.12226 -37.64067 -36.70300 -35.86249 -34.03658 -32.58765 -31.65747 -31.13355 -30.76779 -29.80063 -26.90802 -25.00847 -24.06457 -23.83184 -23.41847 -22.12143 -21.46437 -21.01082 -19.82288 -19.01750 -18.60251 -17.81942 -16.99633 -16.84253 -16.56818 -16.29772 -16.01404 -15.73619 -15.41915 -15.33756 -15.26556 -15.07963 -14.77915 -14.47761 -14.33484 -14.07205 -13.92092 -13.29913 -13.21558 -13.14136 -12.92526 -12.81744 -12.71385 -12.60117 -12.54120 -12.22243 -12.03361 -12.01345 -11.86586 -11.57497 -11.39025 -11.37746 -11.19032 -10.55473 -10.37750 -9.86735 -9.77875 -9.50252 -8.65392 -7.86142 -5.37073 0.26476 0.35307 1.49306 1.50969 1.58178 1.67517 2.17362 2.52233 2.69510 3.23827 3.31338 3.33412 3.54160 3.68014 3.91331 3.92296 4.07807 4.14940 4.28653 4.31435 4.35615 4.47557 4.50061 4.55709 4.66489 4.69122 4.82203 4.85426 4.89254 4.91267 5.00475 5.04628 5.07837 5.17122 5.22213 5.30299 5.34162 5.42932 5.48848 5.54492 5.60271 5.64440 5.65112 5.72576 5.90790 6.03599 6.41890 6.83946 7.11910 7.16179 7.61355 7.84123 8.38621 9.20413 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028828 B = 0.002090 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.051481 B =13392.300406 C =13726.648734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.206 3.794 3 H 0.072 0.928 4 N -0.728 5.728 5 C 0.701 3.299 6 O -0.634 6.634 7 N -0.726 5.726 8 C 0.181 3.819 9 C -0.122 4.122 10 C 0.145 3.855 11 N -0.609 5.609 12 C -0.264 4.264 13 H 0.067 0.933 14 C -0.050 4.050 15 N -0.937 5.937 16 Si 0.973 3.027 17 H -0.277 1.277 18 H -0.294 1.294 19 H -0.274 1.274 20 C 0.180 3.820 21 C -0.127 4.127 22 C -0.128 4.128 23 C -0.105 4.105 24 C -0.126 4.126 25 C -0.105 4.105 26 C -0.152 4.152 27 C 0.101 3.899 28 O -0.511 6.511 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.408 0.592 33 H 0.409 0.591 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.005 0.995 38 H 0.058 0.942 39 H 0.251 0.749 40 H -0.008 1.008 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.140 0.860 45 H 0.151 0.849 46 H 0.151 0.849 47 H 0.141 0.859 48 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.947 -10.608 28.510 31.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.101 3.899 3 H 0.090 0.910 4 N -0.386 5.386 5 C 0.401 3.599 6 O -0.515 6.515 7 N -0.380 5.380 8 C 0.076 3.924 9 C -0.162 4.162 10 C 0.019 3.981 11 N -0.333 5.333 12 C -0.394 4.394 13 H 0.085 0.915 14 C -0.246 4.246 15 N -0.583 5.583 16 Si 0.800 3.200 17 H -0.203 1.203 18 H -0.221 1.221 19 H -0.200 1.200 20 C 0.053 3.947 21 C -0.167 4.167 22 C -0.129 4.129 23 C -0.124 4.124 24 C -0.144 4.144 25 C -0.123 4.123 26 C -0.170 4.170 27 C 0.057 3.943 28 O -0.324 6.324 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.246 0.754 33 H 0.246 0.754 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.023 0.977 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.010 0.990 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.157 0.843 45 H 0.169 0.831 46 H 0.169 0.831 47 H 0.159 0.841 48 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -6.447 -9.438 28.208 30.436 hybrid contribution -0.103 -0.474 -1.012 1.122 sum -6.550 -9.913 27.196 29.678 Atomic orbital electron populations 1.22086 0.93346 1.02963 1.02361 1.19362 0.94443 0.95635 0.80470 0.91014 1.45119 1.71870 1.12602 1.09038 1.16130 0.77940 0.84849 0.80987 1.90900 1.60012 1.15595 1.84999 1.45118 1.70732 1.12844 1.09334 1.20485 0.95243 0.94816 0.81870 1.22172 0.96972 1.00837 0.96249 1.20971 0.91486 0.93627 0.92066 1.44301 1.09470 1.70852 1.08656 1.19482 0.96609 1.37479 0.85851 0.91522 1.25957 0.97215 0.99942 1.01438 1.70145 1.04832 1.46292 1.37048 0.85267 0.76499 0.78639 0.79548 1.20315 1.22057 1.19969 1.20565 0.87736 0.95398 0.90980 1.22264 0.98040 0.99900 0.96506 1.20264 1.02998 0.95020 0.94663 1.21043 0.98808 0.92695 0.99805 1.21489 0.99052 1.01506 0.92337 1.21418 0.98234 0.93421 0.99226 1.21649 1.01611 0.95595 0.98158 1.18437 1.00060 0.83127 0.92722 1.84798 1.36350 1.19479 1.91821 0.90133 0.93713 0.90998 0.75361 0.75444 0.92916 0.91464 0.92463 0.97696 0.92351 0.94000 0.98968 0.91615 0.90712 0.90996 0.84253 0.83143 0.83141 0.84114 0.73416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.49 71.98 0.68 -1.95 16 2 C 0.21 4.32 2.59 44.24 0.11 4.44 16 3 H 0.07 2.04 6.94 -2.38 -0.02 2.02 16 4 N -0.73 -15.48 4.97 -461.41 -2.29 -17.77 16 5 C 0.70 21.16 8.52 179.05 1.53 22.69 16 6 O -0.63 -25.46 15.61 -4.00 -0.06 -25.53 16 7 N -0.73 -19.96 5.08 -457.70 -2.33 -22.28 16 8 C 0.18 6.43 2.42 45.02 0.11 6.54 16 9 C -0.12 -4.51 5.65 30.67 0.17 -4.34 16 10 C 0.14 6.46 6.52 86.36 0.56 7.02 16 11 N -0.61 -31.33 2.99 -699.11 -2.09 -33.42 16 12 C -0.26 -14.62 9.58 84.04 0.81 -13.82 16 13 H 0.07 3.58 7.85 -2.91 -0.02 3.55 16 14 C -0.05 -2.81 5.04 84.86 0.43 -2.39 16 15 N -0.94 -55.72 11.05 21.65 0.24 -55.48 16 16 Si 0.97 44.73 29.57 68.60 2.03 46.76 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 C 0.18 8.76 5.25 86.36 0.45 9.21 16 21 C -0.13 -4.64 5.55 30.67 0.17 -4.47 16 22 C -0.13 -2.17 5.05 -19.77 -0.10 -2.27 16 23 C -0.11 -1.33 9.22 22.26 0.21 -1.13 16 24 C -0.13 -1.27 10.04 22.28 0.22 -1.05 16 25 C -0.11 -1.07 10.04 22.25 0.22 -0.85 16 26 C -0.15 -2.00 9.99 22.37 0.22 -1.78 16 27 C 0.10 1.71 6.68 22.51 0.15 1.86 16 28 O -0.51 -8.70 12.59 -92.40 -1.16 -9.86 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.41 5.86 6.36 -92.71 -0.59 5.27 16 33 H 0.41 8.24 8.62 -92.71 -0.80 7.44 16 34 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 35 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 39 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 40 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 41 H 0.07 3.56 6.10 -2.39 -0.01 3.55 16 42 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.14 1.21 6.19 -2.91 -0.02 1.19 16 45 H 0.15 0.76 8.06 -2.91 -0.02 0.73 16 46 H 0.15 0.76 8.06 -2.91 -0.02 0.74 16 47 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 48 H 0.41 3.09 9.06 -74.06 -0.67 2.42 16 Total: -1.00 -76.24 387.21 -0.78 -77.01 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: -1.06 Total: 22.86 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 5.95 Total: 17.71 kcal Atomic # 7 Polarization: -122.49 SS G_CDS: -6.47 Total: -128.96 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -1.23 Total: -35.39 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -76.24 -0.78 -77.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868226232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.484 kcal (2) G-P(sol) polarization free energy of solvation -76.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds