Wall clock time and date at job start Tue Mar 31 2020 17:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00211 * 2 1 4 4 H 1.09005 * 112.84754 * 18.80055 * 3 2 1 5 5 C 1.53786 * 113.69212 * 247.53942 * 3 2 1 6 6 H 1.08993 * 113.61702 * 105.37157 * 5 3 2 7 7 C 1.53002 * 113.61063 * 334.54749 * 5 3 2 8 8 C 1.53779 * 87.07890 * 220.00355 * 5 3 2 9 9 H 1.09000 * 113.61371 * 139.97741 * 8 5 3 10 10 N 1.46504 * 113.61628 * 270.88198 * 8 5 3 11 11 C 1.34777 * 119.99788 * 252.49921 * 10 8 5 12 12 O 1.21577 * 119.99857 * 359.97438 * 11 10 8 13 13 N 1.34774 * 119.99886 * 179.97438 * 11 10 8 14 14 C 1.39461 * 120.00126 * 184.17596 * 13 11 10 15 15 C 1.38640 * 119.64856 * 174.66054 * 14 13 11 16 16 C 1.40821 * 118.67640 * 180.02562 * 15 14 13 17 17 C 1.41540 * 120.99933 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00329 * 328.64356 * 17 16 15 19 19 C 1.40034 * 119.99655 * 148.63987 * 17 16 15 20 20 N 1.30741 * 120.00282 * 359.80993 * 19 17 16 21 21 Si 1.86800 * 119.99822 * 179.81089 * 19 17 16 22 22 H 1.48497 * 109.47127 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46941 * 120.00075 * 21 19 17 24 24 H 1.48492 * 109.47371 * 239.99912 * 21 19 17 25 25 C 1.41166 * 117.99944 * 0.02562 * 16 15 14 26 26 C 1.36583 * 119.13030 * 359.97438 * 25 16 15 27 27 N 1.32063 * 121.26105 * 359.72774 * 26 25 16 28 28 C 1.53774 * 113.61911 * 149.99821 * 3 2 1 29 29 C 1.52999 * 113.61726 * 254.61617 * 28 3 2 30 30 C 1.53001 * 113.61321 * 25.43130 * 28 3 2 31 31 H 1.08997 * 109.47107 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47350 * 300.00142 * 1 2 3 33 33 H 1.09003 * 109.47269 * 59.99725 * 1 2 3 34 34 H 1.08999 * 109.46861 * 40.01644 * 7 5 3 35 35 H 1.08997 * 109.46669 * 160.01169 * 7 5 3 36 36 H 1.08996 * 109.47312 * 280.01559 * 7 5 3 37 37 H 0.96997 * 119.99513 * 72.49461 * 10 8 5 38 38 H 0.97000 * 119.99951 * 4.18131 * 13 11 10 39 39 H 1.08003 * 120.66557 * 359.97438 * 15 14 13 40 40 H 0.96997 * 120.00218 * 180.02562 * 20 19 17 41 41 H 1.08006 * 120.43146 * 179.97438 * 25 16 15 42 42 H 1.08008 * 119.37152 * 180.02562 * 26 25 16 43 43 H 1.08998 * 109.47106 * 79.50035 * 29 28 3 44 44 H 1.09000 * 109.47205 * 319.50157 * 29 28 3 45 45 H 1.09000 * 109.47503 * 199.50348 * 29 28 3 46 46 H 1.08997 * 109.47735 * 274.35025 * 30 28 3 47 47 H 1.09009 * 109.46805 * 34.34809 * 30 28 3 48 48 H 1.08995 * 109.47320 * 154.34232 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 0.3237 5 6 2.7531 1.6511 -1.3014 6 1 2.2126 2.3492 -1.9405 7 6 3.2638 0.4244 -2.0599 8 6 3.8219 2.3200 -0.4211 9 1 4.8419 2.1429 -0.7622 10 7 3.5516 3.7323 -0.1406 11 6 4.2911 4.6906 -0.7332 12 8 5.1829 4.3830 -1.5002 13 7 4.0420 5.9898 -0.4756 14 6 4.7480 6.9830 -1.1538 15 6 4.4103 8.3144 -0.9659 16 6 5.1363 9.3004 -1.6615 17 6 4.8334 10.6743 -1.5059 18 1 3.8190 10.9840 -1.3028 19 6 5.8493 11.6319 -1.6154 20 7 7.0781 11.2567 -1.8575 21 14 5.4487 13.4454 -1.4153 22 1 3.9966 13.6051 -1.1488 23 1 6.2244 14.0011 -0.2774 24 1 5.8069 14.1717 -2.6600 25 6 6.1752 8.8774 -2.5185 26 6 6.4350 7.5420 -2.6395 27 7 5.7375 6.6444 -1.9672 28 6 3.3755 1.3720 0.7045 29 6 3.3230 2.0372 2.0813 30 6 4.1240 0.0377 0.7176 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5139 -0.8900 34 1 2.5153 -0.3668 -2.0170 35 1 3.4504 0.6920 -3.0999 36 1 4.1893 0.0741 -1.6031 37 1 2.8403 3.9775 0.4716 38 1 3.3718 6.2341 0.1817 39 1 3.6058 8.5900 -0.3000 40 1 7.7818 11.9199 -1.9329 41 1 6.7569 9.6003 -3.0713 42 1 7.2293 7.2140 -3.2938 43 1 2.9495 1.3235 2.8156 44 1 2.6583 2.9002 2.0428 45 1 4.3237 2.3618 2.3665 46 1 3.7958 -0.5549 1.5715 47 1 3.9142 -0.5057 -0.2039 48 1 5.1954 0.2228 0.7941 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871727676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:18 Heat of formation + Delta-G solvation = -6.061563 kcal Electronic energy + Delta-G solvation = -28779.045595 eV Core-core repulsion = 24835.473585 eV Total energy + Delta-G solvation = -3943.572010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.20022 -39.50077 -37.92424 -36.71756 -34.42213 -33.61247 -33.00708 -31.85109 -30.62470 -28.71083 -27.98336 -27.28471 -26.68253 -25.96817 -24.32813 -22.00661 -21.69146 -21.02517 -20.14144 -18.89392 -18.01263 -17.65015 -16.70520 -16.14853 -15.95827 -15.75623 -15.44966 -14.91219 -14.81628 -14.39493 -14.10978 -13.86932 -13.70689 -13.49598 -13.12653 -13.02501 -12.88841 -12.62855 -12.42974 -12.35791 -12.31790 -12.24695 -12.12701 -11.47795 -11.43099 -11.27592 -11.23797 -11.08304 -10.95378 -10.49465 -10.37336 -10.32262 -10.00214 -9.76843 -9.56120 -9.44550 -9.37086 -8.77805 -7.95157 -7.72630 -6.99640 -6.69104 -4.62830 2.71535 2.79177 2.89945 3.03625 3.08293 3.23194 3.54431 3.79958 3.88642 4.14983 4.30369 4.43362 4.60219 4.62801 4.74352 4.96906 5.00992 5.10215 5.11171 5.34548 5.36792 5.40340 5.50299 5.52819 5.63185 5.69304 5.73767 5.75646 5.81134 5.89773 5.98759 6.00817 6.12164 6.23397 6.31795 6.50537 6.58938 6.71275 6.78312 6.94359 6.99057 7.16327 7.24788 7.44557 7.56846 7.93791 8.10698 8.32615 8.50642 8.75623 8.78367 9.12859 9.72832 10.16158 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026467 B = 0.002225 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.665693 B =12582.863291 C =12905.338989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.072 3.928 4 H 0.083 0.917 5 C -0.140 4.140 6 H 0.079 0.921 7 C -0.133 4.133 8 C 0.158 3.842 9 H 0.110 0.890 10 N -0.736 5.736 11 C 0.693 3.307 12 O -0.526 6.526 13 N -0.670 5.670 14 C 0.363 3.637 15 C -0.300 4.300 16 C 0.145 3.855 17 C -0.458 4.458 18 H 0.079 0.921 19 C 0.073 3.927 20 N -0.799 5.799 21 Si 0.918 3.082 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.272 1.272 25 C -0.217 4.217 26 C 0.102 3.898 27 N -0.547 5.547 28 C -0.087 4.087 29 C -0.136 4.136 30 C -0.131 4.131 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.389 0.611 38 H 0.401 0.599 39 H 0.101 0.899 40 H 0.280 0.720 41 H 0.135 0.865 42 H 0.123 0.877 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.080 0.920 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.787 -17.134 6.187 21.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.286 6.286 3 C 0.013 3.987 4 H 0.101 0.899 5 C -0.161 4.161 6 H 0.098 0.902 7 C -0.190 4.190 8 C 0.050 3.950 9 H 0.128 0.872 10 N -0.393 5.393 11 C 0.392 3.608 12 O -0.396 6.396 13 N -0.318 5.318 14 C 0.134 3.866 15 C -0.326 4.326 16 C 0.137 3.863 17 C -0.490 4.490 18 H 0.098 0.902 19 C -0.144 4.144 20 N -0.426 5.426 21 Si 0.742 3.258 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.198 1.198 25 C -0.240 4.240 26 C -0.049 4.049 27 N -0.266 5.266 28 C -0.088 4.088 29 C -0.193 4.193 30 C -0.188 4.188 31 H 0.101 0.899 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.223 0.777 38 H 0.235 0.765 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.152 0.848 42 H 0.140 0.860 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.099 0.901 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.368 -18.414 5.303 21.330 hybrid contribution -1.351 2.386 0.978 2.911 sum -10.720 -16.028 6.281 20.279 Atomic orbital electron populations 1.22769 0.81665 1.02516 0.99833 1.87919 1.19038 1.27228 1.94368 1.23988 0.93224 0.84973 0.96469 0.89871 1.23387 0.97976 0.98291 0.96420 0.90249 1.21640 1.01619 0.96416 0.99337 1.21687 0.99904 0.78772 0.94588 0.87170 1.44919 1.38754 1.04725 1.50903 1.16055 0.82478 0.80606 0.81639 1.91027 1.31390 1.80348 1.36857 1.42568 1.41917 1.03782 1.43544 1.17761 0.91415 0.84692 0.92768 1.21260 1.09812 0.90879 1.10653 1.17630 0.89212 0.92698 0.86810 1.19553 0.95813 0.90284 1.43304 0.90239 1.25942 0.94502 1.01701 0.92296 1.69733 1.01034 1.36231 1.35560 0.86109 0.79818 0.81208 0.78651 1.18487 1.19877 1.19761 1.22183 1.03376 0.95469 1.03000 1.21679 0.96818 0.89772 0.96647 1.67212 1.08956 1.37845 1.12588 1.22543 0.94878 0.96574 0.94821 1.21696 1.02342 0.99852 0.95443 1.21723 0.99059 0.94462 1.03597 0.89858 0.94249 0.94144 0.91337 0.92682 0.91311 0.77671 0.76461 0.88060 0.90848 0.84755 0.85964 0.92282 0.92877 0.91759 0.92188 0.90121 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.85 101.05 1.10 1.30 16 2 O -0.37 -3.44 8.33 -35.23 -0.29 -3.73 16 3 C 0.07 0.67 3.55 -25.92 -0.09 0.57 16 4 H 0.08 0.70 7.73 -51.93 -0.40 0.29 16 5 C -0.14 -1.54 4.33 -89.80 -0.39 -1.93 16 6 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 7 C -0.13 -1.36 8.39 37.16 0.31 -1.05 16 8 C 0.16 1.92 3.33 -67.12 -0.22 1.70 16 9 H 0.11 1.61 7.33 -51.93 -0.38 1.23 16 10 N -0.74 -9.60 4.78 -57.88 -0.28 -9.88 16 11 C 0.69 12.86 8.52 -86.92 -0.74 12.12 16 12 O -0.53 -12.30 14.20 5.30 0.08 -12.23 16 13 N -0.67 -12.44 5.40 -15.86 -0.09 -12.53 16 14 C 0.36 8.57 7.42 -154.68 -1.15 7.43 16 15 C -0.30 -7.20 9.74 -38.46 -0.37 -7.58 16 16 C 0.15 3.83 5.59 -106.55 -0.60 3.23 16 17 C -0.46 -11.80 9.12 -37.65 -0.34 -12.14 16 18 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 19 C 0.07 1.79 5.41 -17.34 -0.09 1.70 16 20 N -0.80 -20.28 10.61 55.55 0.59 -19.69 16 21 Si 0.92 18.24 29.56 -169.99 -5.02 13.22 16 22 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 23 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 24 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 25 C -0.22 -5.69 8.72 -39.07 -0.34 -6.03 16 26 C 0.10 2.58 11.10 -18.05 -0.20 2.38 16 27 N -0.55 -14.21 7.86 -12.76 -0.10 -14.31 16 28 C -0.09 -0.83 1.33 -153.70 -0.21 -1.04 16 29 C -0.14 -1.17 8.62 37.16 0.32 -0.84 16 30 C -0.13 -1.19 7.98 37.16 0.30 -0.89 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.66 7.06 -51.93 -0.37 0.30 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.68 5.35 -51.93 -0.28 0.40 16 37 H 0.39 3.88 7.12 -40.82 -0.29 3.59 16 38 H 0.40 5.71 8.71 -40.82 -0.36 5.36 16 39 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 40 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 41 H 0.13 3.58 6.14 -52.48 -0.32 3.26 16 42 H 0.12 2.80 8.06 -52.48 -0.42 2.37 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.05 0.40 6.55 -51.93 -0.34 0.06 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 47 H 0.08 0.74 4.43 -51.92 -0.23 0.51 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -32.25 382.01 -9.24 -41.49 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -7.16 Total: 12.98 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.72 Total: -1.09 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.13 Total: -56.40 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.22 Total: -15.96 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.02 Total: 13.22 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.25 -9.24 -41.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871727676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.427 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds