Wall clock time and date at job start Tue Mar 31 2020 17:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00211 * 2 1 4 4 H 1.09005 * 112.84754 * 18.80055 * 3 2 1 5 5 C 1.53786 * 113.69212 * 247.53942 * 3 2 1 6 6 H 1.08993 * 113.61702 * 105.37157 * 5 3 2 7 7 C 1.53002 * 113.61063 * 334.54749 * 5 3 2 8 8 C 1.53779 * 87.07890 * 220.00355 * 5 3 2 9 9 H 1.09000 * 113.61371 * 139.97741 * 8 5 3 10 10 N 1.46504 * 113.61628 * 270.88198 * 8 5 3 11 11 C 1.34777 * 119.99788 * 252.49921 * 10 8 5 12 12 O 1.21577 * 119.99857 * 359.97438 * 11 10 8 13 13 N 1.34774 * 119.99886 * 179.97438 * 11 10 8 14 14 C 1.39461 * 120.00126 * 184.17596 * 13 11 10 15 15 C 1.38640 * 119.64856 * 174.66054 * 14 13 11 16 16 C 1.40821 * 118.67640 * 180.02562 * 15 14 13 17 17 C 1.41540 * 120.99933 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00329 * 328.64356 * 17 16 15 19 19 C 1.40034 * 119.99655 * 148.63987 * 17 16 15 20 20 N 1.30741 * 120.00282 * 359.80993 * 19 17 16 21 21 Si 1.86800 * 119.99822 * 179.81089 * 19 17 16 22 22 H 1.48497 * 109.47127 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46941 * 120.00075 * 21 19 17 24 24 H 1.48492 * 109.47371 * 239.99912 * 21 19 17 25 25 C 1.41166 * 117.99944 * 0.02562 * 16 15 14 26 26 C 1.36583 * 119.13030 * 359.97438 * 25 16 15 27 27 N 1.32063 * 121.26105 * 359.72774 * 26 25 16 28 28 C 1.53774 * 113.61911 * 149.99821 * 3 2 1 29 29 C 1.52999 * 113.61726 * 254.61617 * 28 3 2 30 30 C 1.53001 * 113.61321 * 25.43130 * 28 3 2 31 31 H 1.08997 * 109.47107 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47350 * 300.00142 * 1 2 3 33 33 H 1.09003 * 109.47269 * 59.99725 * 1 2 3 34 34 H 1.08999 * 109.46861 * 40.01644 * 7 5 3 35 35 H 1.08997 * 109.46669 * 160.01169 * 7 5 3 36 36 H 1.08996 * 109.47312 * 280.01559 * 7 5 3 37 37 H 0.96997 * 119.99513 * 72.49461 * 10 8 5 38 38 H 0.97000 * 119.99951 * 4.18131 * 13 11 10 39 39 H 1.08003 * 120.66557 * 359.97438 * 15 14 13 40 40 H 0.96997 * 120.00218 * 180.02562 * 20 19 17 41 41 H 1.08006 * 120.43146 * 179.97438 * 25 16 15 42 42 H 1.08008 * 119.37152 * 180.02562 * 26 25 16 43 43 H 1.08998 * 109.47106 * 79.50035 * 29 28 3 44 44 H 1.09000 * 109.47205 * 319.50157 * 29 28 3 45 45 H 1.09000 * 109.47503 * 199.50348 * 29 28 3 46 46 H 1.08997 * 109.47735 * 274.35025 * 30 28 3 47 47 H 1.09009 * 109.46805 * 34.34809 * 30 28 3 48 48 H 1.08995 * 109.47320 * 154.34232 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 0.3237 5 6 2.7531 1.6511 -1.3014 6 1 2.2126 2.3492 -1.9405 7 6 3.2638 0.4244 -2.0599 8 6 3.8219 2.3200 -0.4211 9 1 4.8419 2.1429 -0.7622 10 7 3.5516 3.7323 -0.1406 11 6 4.2911 4.6906 -0.7332 12 8 5.1829 4.3830 -1.5002 13 7 4.0420 5.9898 -0.4756 14 6 4.7480 6.9830 -1.1538 15 6 4.4103 8.3144 -0.9659 16 6 5.1363 9.3004 -1.6615 17 6 4.8334 10.6743 -1.5059 18 1 3.8190 10.9840 -1.3028 19 6 5.8493 11.6319 -1.6154 20 7 7.0781 11.2567 -1.8575 21 14 5.4487 13.4454 -1.4153 22 1 3.9966 13.6051 -1.1488 23 1 6.2244 14.0011 -0.2774 24 1 5.8069 14.1717 -2.6600 25 6 6.1752 8.8774 -2.5185 26 6 6.4350 7.5420 -2.6395 27 7 5.7375 6.6444 -1.9672 28 6 3.3755 1.3720 0.7045 29 6 3.3230 2.0372 2.0813 30 6 4.1240 0.0377 0.7176 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5139 -0.8900 34 1 2.5153 -0.3668 -2.0170 35 1 3.4504 0.6920 -3.0999 36 1 4.1893 0.0741 -1.6031 37 1 2.8403 3.9775 0.4716 38 1 3.3718 6.2341 0.1817 39 1 3.6058 8.5900 -0.3000 40 1 7.7818 11.9199 -1.9329 41 1 6.7569 9.6003 -3.0713 42 1 7.2293 7.2140 -3.2938 43 1 2.9495 1.3235 2.8156 44 1 2.6583 2.9002 2.0428 45 1 4.3237 2.3618 2.3665 46 1 3.7958 -0.5549 1.5715 47 1 3.9142 -0.5057 -0.2039 48 1 5.1954 0.2228 0.7941 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871727676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:17 Heat of formation + Delta-G solvation = -25.830656 kcal Electronic energy + Delta-G solvation = -28779.902848 eV Core-core repulsion = 24835.473585 eV Total energy + Delta-G solvation = -3944.429262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.18528 -41.03494 -39.60610 -37.52093 -36.20244 -35.34465 -34.31205 -32.64447 -32.55830 -30.37499 -28.90521 -27.95649 -27.89433 -27.43015 -25.30909 -23.72195 -23.48110 -21.90249 -21.69599 -20.00359 -19.68493 -19.04133 -17.78497 -17.40737 -17.01907 -16.78017 -16.60801 -16.32854 -16.17858 -16.10015 -15.88909 -15.21192 -14.79415 -14.65965 -14.32936 -14.28447 -14.17270 -13.89784 -13.66731 -13.42093 -13.16773 -13.13686 -12.98685 -12.94490 -12.88040 -12.79119 -12.16560 -12.13773 -12.08351 -11.81579 -11.78602 -11.51817 -11.31870 -11.27099 -11.18316 -11.16053 -10.19260 -9.96219 -9.90381 -9.63660 -8.83284 -8.54208 -6.59364 0.82571 0.99631 1.41754 1.52893 1.56686 1.58190 2.21173 2.26916 2.86071 2.87328 3.11843 3.32918 3.49512 3.70058 3.75833 3.86280 4.10677 4.22953 4.32970 4.43754 4.52074 4.54684 4.62585 4.67584 4.73926 4.74948 4.83235 4.86440 4.91811 4.93623 4.96190 4.99841 5.04883 5.05267 5.13435 5.18039 5.28629 5.29872 5.44326 5.49724 5.53826 5.60597 5.65037 5.89194 6.00565 6.26094 6.33078 6.55923 6.80204 6.85436 6.99170 7.61055 7.89234 8.33658 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026467 B = 0.002225 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.665693 B =12582.863291 C =12905.338989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.378 6.378 3 C 0.084 3.916 4 H 0.099 0.901 5 C -0.143 4.143 6 H 0.066 0.934 7 C -0.130 4.130 8 C 0.145 3.855 9 H 0.081 0.919 10 N -0.710 5.710 11 C 0.692 3.308 12 O -0.578 6.578 13 N -0.658 5.658 14 C 0.363 3.637 15 C -0.305 4.305 16 C 0.117 3.883 17 C -0.483 4.483 18 H 0.087 0.913 19 C 0.030 3.970 20 N -0.829 5.829 21 Si 0.995 3.005 22 H -0.254 1.254 23 H -0.268 1.268 24 H -0.266 1.266 25 C -0.236 4.236 26 C 0.095 3.905 27 N -0.573 5.573 28 C -0.076 4.076 29 C -0.136 4.136 30 C -0.131 4.131 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.409 0.591 38 H 0.423 0.577 39 H 0.126 0.874 40 H 0.289 0.711 41 H 0.123 0.877 42 H 0.136 0.864 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.952 -17.161 7.970 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.297 6.297 3 C 0.026 3.974 4 H 0.117 0.883 5 C -0.163 4.163 6 H 0.084 0.916 7 C -0.187 4.187 8 C 0.038 3.962 9 H 0.099 0.901 10 N -0.367 5.367 11 C 0.391 3.609 12 O -0.452 6.452 13 N -0.308 5.308 14 C 0.133 3.867 15 C -0.331 4.331 16 C 0.108 3.892 17 C -0.514 4.514 18 H 0.105 0.895 19 C -0.185 4.185 20 N -0.455 5.455 21 Si 0.815 3.185 22 H -0.177 1.177 23 H -0.192 1.192 24 H -0.191 1.191 25 C -0.260 4.260 26 C -0.055 4.055 27 N -0.293 5.293 28 C -0.078 4.078 29 C -0.193 4.193 30 C -0.188 4.188 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.246 0.754 38 H 0.261 0.739 39 H 0.144 0.856 40 H 0.100 0.900 41 H 0.141 0.859 42 H 0.154 0.846 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.097 0.903 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.604 -18.493 7.141 22.970 hybrid contribution -0.691 2.276 0.423 2.416 sum -12.295 -16.216 7.565 21.711 Atomic orbital electron populations 1.22952 0.80262 1.03687 1.00464 1.87902 1.20568 1.26902 1.94293 1.23856 0.93274 0.85674 0.94614 0.88299 1.23396 0.97702 0.98114 0.97095 0.91557 1.21620 1.01995 0.96394 0.98718 1.21822 0.98941 0.78416 0.96990 0.90075 1.44609 1.37982 1.04184 1.49920 1.16218 0.82332 0.80986 0.81337 1.90999 1.33827 1.81108 1.39236 1.42367 1.41768 1.03188 1.43456 1.18002 0.90820 0.85849 0.92071 1.21446 1.10211 0.90676 1.10800 1.18047 0.89843 0.93922 0.87356 1.19865 0.96632 0.90617 1.44270 0.89516 1.26907 0.93971 1.06347 0.91248 1.69807 1.02101 1.38181 1.35437 0.84959 0.79874 0.74859 0.78794 1.17694 1.19236 1.19071 1.22129 1.04276 0.95561 1.04018 1.21916 0.97171 0.89628 0.96818 1.67316 1.10132 1.38168 1.13708 1.22474 0.94862 0.95869 0.94567 1.21712 1.02178 1.00613 0.94807 1.21729 0.98842 0.94293 1.03973 0.88548 0.93049 0.94049 0.90444 0.93621 0.91101 0.75365 0.73902 0.85592 0.90033 0.85935 0.84617 0.90884 0.91623 0.92761 0.91086 0.90328 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.85 113.37 1.23 1.48 16 2 O -0.38 -6.11 8.33 -148.98 -1.24 -7.35 16 3 C 0.08 1.37 3.55 31.12 0.11 1.48 16 4 H 0.10 1.32 7.73 -2.38 -0.02 1.30 16 5 C -0.14 -3.03 4.33 -10.27 -0.04 -3.08 16 6 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 7 C -0.13 -2.63 8.39 71.98 0.60 -2.02 16 8 C 0.14 3.46 3.33 45.52 0.15 3.62 16 9 H 0.08 2.46 7.33 -2.39 -0.02 2.45 16 10 N -0.71 -17.73 4.78 -455.30 -2.17 -19.90 16 11 C 0.69 25.54 8.52 179.06 1.53 27.07 16 12 O -0.58 -27.67 14.20 -3.96 -0.06 -27.73 16 13 N -0.66 -23.90 5.40 -322.37 -1.74 -25.64 16 14 C 0.36 17.20 7.42 132.76 0.98 18.19 16 15 C -0.31 -14.64 9.74 23.00 0.22 -14.42 16 16 C 0.12 6.26 5.59 -21.11 -0.12 6.15 16 17 C -0.48 -24.94 9.12 23.52 0.21 -24.73 16 18 H 0.09 4.21 7.85 -2.91 -0.02 4.19 16 19 C 0.03 1.47 5.41 85.29 0.46 1.93 16 20 N -0.83 -42.50 10.61 21.84 0.23 -42.27 16 21 Si 0.99 36.65 29.56 68.60 2.03 38.68 16 22 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 23 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 24 H -0.27 -9.46 7.11 99.48 0.71 -8.76 16 25 C -0.24 -12.82 8.72 22.60 0.20 -12.62 16 26 C 0.10 5.00 11.10 84.27 0.94 5.94 16 27 N -0.57 -30.45 7.86 -194.27 -1.53 -31.97 16 28 C -0.08 -1.33 1.33 -51.66 -0.07 -1.40 16 29 C -0.14 -1.98 8.62 71.98 0.62 -1.36 16 30 C -0.13 -2.20 7.98 71.98 0.57 -1.63 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.08 1.41 7.06 -2.39 -0.02 1.40 16 35 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.39 5.35 -2.39 -0.01 1.38 16 37 H 0.41 7.13 7.12 -92.71 -0.66 6.47 16 38 H 0.42 11.20 8.71 -92.71 -0.81 10.39 16 39 H 0.13 5.24 8.06 -2.91 -0.02 5.22 16 40 H 0.29 13.36 8.29 -92.71 -0.77 12.59 16 41 H 0.12 6.82 6.14 -2.91 -0.02 6.80 16 42 H 0.14 6.46 8.06 -2.91 -0.02 6.44 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.06 0.77 6.55 -2.39 -0.02 0.76 16 45 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 47 H 0.08 1.35 4.43 -2.38 -0.01 1.34 16 48 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -71.46 382.01 2.65 -68.81 By element: Atomic # 1 Polarization: 43.25 SS G_CDS: -0.47 Total: 42.78 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 7.60 Total: 4.59 kcal Atomic # 7 Polarization: -114.58 SS G_CDS: -5.21 Total: -119.78 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -1.30 Total: -35.08 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 2.03 Total: 38.68 kcal Total: -71.46 2.65 -68.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871727676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.978 kcal (2) G-P(sol) polarization free energy of solvation -71.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds