Wall clock time and date at job start Tue Mar 31 2020 17:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00188 * 2 1 4 4 H 1.09004 * 112.84757 * 21.69178 * 3 2 1 5 5 C 1.53785 * 113.61546 * 250.49814 * 3 2 1 6 6 H 1.09002 * 113.69194 * 334.58121 * 5 3 2 7 7 C 1.53006 * 113.61457 * 105.46949 * 5 3 2 8 8 C 1.53776 * 87.08079 * 220.01608 * 5 3 2 9 9 H 1.09000 * 113.61283 * 140.06468 * 8 5 3 10 10 N 1.46498 * 113.61537 * 270.88156 * 8 5 3 11 11 C 1.34776 * 120.00468 * 255.49644 * 10 8 5 12 12 O 1.21587 * 119.99689 * 0.27613 * 11 10 8 13 13 N 1.34769 * 120.00537 * 180.02562 * 11 10 8 14 14 C 1.39453 * 120.00477 * 174.89122 * 13 11 10 15 15 C 1.38649 * 119.65090 * 185.27789 * 14 13 11 16 16 C 1.40820 * 118.67232 * 179.97438 * 15 14 13 17 17 C 1.41548 * 120.99245 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00620 * 331.77166 * 17 16 15 19 19 C 1.40031 * 119.99593 * 151.77127 * 17 16 15 20 20 N 1.30743 * 120.00331 * 349.96972 * 19 17 16 21 21 Si 1.86806 * 119.99874 * 169.97231 * 19 17 16 22 22 H 1.48496 * 109.47390 * 90.00050 * 21 19 17 23 23 H 1.48502 * 109.47110 * 210.00069 * 21 19 17 24 24 H 1.48500 * 109.47052 * 329.99749 * 21 19 17 25 25 C 1.41166 * 118.00849 * 0.02562 * 16 15 14 26 26 C 1.36581 * 119.12707 * 0.02562 * 25 16 15 27 27 N 1.32072 * 121.25955 * 359.74014 * 26 25 16 28 28 C 1.53772 * 113.61801 * 152.99948 * 3 2 1 29 29 C 1.53011 * 113.61375 * 25.43397 * 28 3 2 30 30 C 1.52997 * 113.61772 * 254.53324 * 28 3 2 31 31 H 1.08996 * 109.47365 * 59.99853 * 1 2 3 32 32 H 1.09001 * 109.47395 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46783 * 299.99900 * 1 2 3 34 34 H 1.08995 * 109.47186 * 157.49809 * 7 5 3 35 35 H 1.09001 * 109.46629 * 277.49775 * 7 5 3 36 36 H 1.09001 * 109.47124 * 37.49281 * 7 5 3 37 37 H 0.97003 * 119.99674 * 75.50134 * 10 8 5 38 38 H 0.97007 * 120.00028 * 354.88420 * 13 11 10 39 39 H 1.07990 * 120.66026 * 359.95508 * 15 14 13 40 40 H 0.96999 * 120.00227 * 179.97438 * 20 19 17 41 41 H 1.08001 * 120.43621 * 179.97438 * 25 16 15 42 42 H 1.07998 * 119.37457 * 180.02562 * 26 25 16 43 43 H 1.08996 * 109.46885 * 157.49935 * 29 28 3 44 44 H 1.08998 * 109.46655 * 277.49570 * 29 28 3 45 45 H 1.08995 * 109.46713 * 37.49716 * 29 28 3 46 46 H 1.08999 * 109.46984 * 322.49850 * 30 28 3 47 47 H 1.09002 * 109.47456 * 82.50048 * 30 28 3 48 48 H 1.09001 * 109.47600 * 202.50207 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3297 2.0717 0.3713 5 6 2.6906 1.6769 -1.3282 6 1 3.0274 0.8147 -1.9039 7 6 1.8919 2.6763 -2.1675 8 6 3.8009 2.3278 -0.4868 9 1 4.8031 2.1586 -0.8805 10 7 3.5459 3.7342 -0.1656 11 6 4.2145 4.7063 -0.8171 12 8 5.0258 4.4161 -1.6750 13 7 3.9802 6.0001 -0.5213 14 6 4.7461 7.0015 -1.1174 15 6 4.5742 8.3207 -0.7269 16 6 5.3588 9.3151 -1.3420 17 6 5.2241 10.6771 -0.9807 18 1 4.2801 11.0461 -0.6079 19 6 6.3149 11.5460 -1.1065 20 7 7.5039 11.0691 -1.3677 21 14 6.0713 13.3867 -0.9012 22 1 6.2602 13.7550 0.5249 23 1 7.0620 14.1132 -1.7355 24 1 4.6981 13.7551 -1.3300 25 6 6.2837 8.9131 -2.3298 26 6 6.3818 7.5888 -2.6491 27 7 5.6329 6.6817 -2.0485 28 6 3.4076 1.3576 0.6396 29 6 4.1553 0.0236 0.5884 30 6 3.4217 1.9951 2.0304 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 2.5625 3.1905 -2.8558 35 1 1.1269 2.1454 -2.7340 36 1 1.4172 3.4050 -1.5103 37 1 2.8957 3.9658 0.5160 38 1 3.2787 6.2348 0.1062 39 1 3.8527 8.5803 0.0335 40 1 8.2595 11.6710 -1.4552 41 1 6.9051 9.6433 -2.8270 42 1 7.0884 7.2767 -3.4039 43 1 5.2268 0.2042 0.6740 44 1 3.8265 -0.6090 1.4129 45 1 3.9452 -0.4745 -0.3580 46 1 2.7170 2.8262 2.0563 47 1 3.1341 1.2516 2.7739 48 1 4.4241 2.3616 2.2520 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871727680.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:24 Heat of formation + Delta-G solvation = -14.550106 kcal Electronic energy + Delta-G solvation = -28900.615209 eV Core-core repulsion = 24956.675108 eV Total energy + Delta-G solvation = -3943.940101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.11057 -39.43307 -37.90027 -36.69437 -34.42273 -33.59262 -32.97188 -32.09176 -30.63564 -28.50720 -27.86826 -27.40322 -26.69485 -25.96975 -24.28928 -22.13349 -21.71321 -20.88331 -20.06712 -18.92797 -18.04734 -17.68925 -16.84230 -16.04712 -15.80185 -15.44785 -15.28984 -14.94386 -14.71553 -14.40091 -14.14952 -13.89231 -13.88294 -13.53236 -13.27893 -13.12777 -12.96787 -12.62844 -12.42654 -12.34269 -12.32059 -12.23723 -11.85173 -11.55992 -11.46367 -11.35173 -11.22064 -11.08451 -10.96899 -10.67974 -10.38899 -10.33848 -10.03395 -9.73131 -9.53914 -9.46081 -9.38219 -8.75947 -7.97992 -7.69946 -7.01265 -6.75242 -4.61462 2.72906 2.79172 2.91583 3.02681 3.06810 3.23523 3.55517 3.81323 3.87059 4.13405 4.31309 4.44976 4.60985 4.63897 4.73352 4.96790 5.02791 5.11358 5.14545 5.24100 5.38384 5.43893 5.50415 5.53063 5.64496 5.69980 5.71493 5.77135 5.82523 5.88240 5.94645 6.02631 6.12983 6.20552 6.26173 6.52049 6.59582 6.72322 6.78559 6.93573 7.01344 7.13726 7.25550 7.44533 7.55032 7.90231 8.10474 8.33329 8.49482 8.74994 8.76413 9.14616 9.74208 10.12431 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026885 B = 0.002263 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.227414 B =12372.656908 C =12494.693692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.372 6.372 3 C 0.074 3.926 4 H 0.084 0.916 5 C -0.141 4.141 6 H 0.103 0.897 7 C -0.134 4.134 8 C 0.159 3.841 9 H 0.108 0.892 10 N -0.734 5.734 11 C 0.694 3.306 12 O -0.526 6.526 13 N -0.671 5.671 14 C 0.366 3.634 15 C -0.305 4.305 16 C 0.148 3.852 17 C -0.458 4.458 18 H 0.080 0.920 19 C 0.076 3.924 20 N -0.792 5.792 21 Si 0.914 3.086 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.261 1.261 25 C -0.220 4.220 26 C 0.104 3.896 27 N -0.550 5.550 28 C -0.088 4.088 29 C -0.116 4.116 30 C -0.136 4.136 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.389 0.611 38 H 0.401 0.599 39 H 0.101 0.899 40 H 0.282 0.718 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.059 0.941 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.418 -16.035 5.574 20.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.290 6.290 3 C 0.016 3.984 4 H 0.102 0.898 5 C -0.161 4.161 6 H 0.121 0.879 7 C -0.191 4.191 8 C 0.052 3.948 9 H 0.126 0.874 10 N -0.391 5.391 11 C 0.394 3.606 12 O -0.396 6.396 13 N -0.319 5.319 14 C 0.137 3.863 15 C -0.331 4.331 16 C 0.140 3.860 17 C -0.489 4.489 18 H 0.098 0.902 19 C -0.143 4.143 20 N -0.418 5.418 21 Si 0.738 3.262 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.185 1.185 25 C -0.244 4.244 26 C -0.047 4.047 27 N -0.269 5.269 28 C -0.089 4.089 29 C -0.174 4.174 30 C -0.193 4.193 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.223 0.777 38 H 0.235 0.765 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.145 0.855 42 H 0.140 0.860 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.157 -17.322 4.476 20.573 hybrid contribution -1.102 2.262 1.095 2.744 sum -11.259 -15.060 5.572 19.611 Atomic orbital electron populations 1.22757 0.81592 1.02475 0.99841 1.87925 1.19166 1.27399 1.94539 1.24119 0.93165 0.84881 0.96241 0.89806 1.23596 0.97282 0.99243 0.95998 0.87853 1.21558 0.99582 0.98217 0.99774 1.21538 0.99622 0.79071 0.94607 0.87387 1.44863 1.46081 1.04578 1.43535 1.16025 0.81864 0.80507 0.82236 1.91030 1.35493 1.80909 1.32186 1.42565 1.37895 1.03969 1.47423 1.17757 0.91488 0.84684 0.92354 1.21200 1.11979 0.90880 1.09033 1.17588 0.88312 0.92571 0.87564 1.19528 0.97946 0.92819 1.38622 0.90202 1.25947 0.94493 1.01523 0.92331 1.69756 0.99957 1.37537 1.34541 0.86217 0.79474 0.81389 0.79075 1.19435 1.20024 1.18463 1.21999 1.04807 0.96040 1.01522 1.21630 0.96107 0.89657 0.97278 1.67219 1.10091 1.37347 1.12236 1.22511 0.94796 0.96569 0.95047 1.21381 0.99107 0.94080 1.02792 1.21689 1.02406 1.00063 0.95163 0.94103 0.89904 0.94270 0.91719 0.93203 0.93011 0.77695 0.76506 0.88125 0.90680 0.85472 0.86032 0.92263 0.91970 0.91729 0.92840 0.92214 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.86 101.05 1.10 1.31 16 2 O -0.37 -3.63 9.80 -35.23 -0.35 -3.97 16 3 C 0.07 0.69 3.15 -25.92 -0.08 0.61 16 4 H 0.08 0.71 7.54 -51.93 -0.39 0.32 16 5 C -0.14 -1.53 3.81 -89.80 -0.34 -1.87 16 6 H 0.10 1.14 7.66 -51.93 -0.40 0.74 16 7 C -0.13 -1.55 9.11 37.16 0.34 -1.21 16 8 C 0.16 1.90 3.60 -67.12 -0.24 1.66 16 9 H 0.11 1.55 7.50 -51.93 -0.39 1.16 16 10 N -0.73 -9.33 3.72 -57.89 -0.22 -9.54 16 11 C 0.69 12.63 8.50 -86.93 -0.74 11.89 16 12 O -0.53 -12.10 14.24 5.29 0.08 -12.03 16 13 N -0.67 -12.31 5.40 -15.86 -0.09 -12.39 16 14 C 0.37 8.60 7.42 -154.68 -1.15 7.45 16 15 C -0.30 -7.30 9.74 -38.45 -0.37 -7.67 16 16 C 0.15 3.90 5.58 -106.55 -0.59 3.30 16 17 C -0.46 -11.75 9.13 -37.65 -0.34 -12.10 16 18 H 0.08 1.94 7.87 -52.49 -0.41 1.53 16 19 C 0.08 1.85 5.30 -17.34 -0.09 1.75 16 20 N -0.79 -20.05 10.84 55.55 0.60 -19.44 16 21 Si 0.91 18.08 29.57 -169.99 -5.03 13.06 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 25 C -0.22 -5.76 8.71 -39.07 -0.34 -6.10 16 26 C 0.10 2.62 11.10 -18.05 -0.20 2.42 16 27 N -0.55 -14.19 7.86 -12.76 -0.10 -14.29 16 28 C -0.09 -0.84 1.34 -153.70 -0.21 -1.04 16 29 C -0.12 -1.05 8.46 37.16 0.31 -0.74 16 30 C -0.14 -1.15 8.58 37.16 0.32 -0.83 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.57 7.57 -51.93 -0.39 0.17 16 37 H 0.39 3.82 7.10 -40.82 -0.29 3.53 16 38 H 0.40 5.65 8.72 -40.82 -0.36 5.29 16 39 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 40 H 0.28 6.48 8.29 -40.82 -0.34 6.15 16 41 H 0.13 3.37 6.27 -52.49 -0.33 3.04 16 42 H 0.12 2.77 8.06 -52.49 -0.42 2.35 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.61 7.18 -51.93 -0.37 0.23 16 46 H 0.05 0.40 6.59 -51.93 -0.34 0.06 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 388.78 15.07 5.86 5.86 Total: -1.00 -32.00 388.78 -9.33 -41.33 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -7.46 Total: 12.59 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -2.63 Total: -1.16 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.20 Total: -55.67 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.27 Total: -16.00 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.00 -9.33 -41.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871727680.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.775 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds