Wall clock time and date at job start Tue Mar 31 2020 18:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47250 * 2 1 4 4 N 1.46906 * 109.47378 * 239.99874 * 2 1 3 5 5 C 1.46900 * 110.99927 * 85.00135 * 4 2 1 6 6 C 1.52998 * 109.47282 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.46718 * 304.99897 * 6 5 4 8 8 O 1.42902 * 109.47163 * 64.99677 * 6 5 4 9 9 C 1.52996 * 109.47375 * 185.00190 * 6 5 4 10 10 N 1.46894 * 109.47160 * 179.97438 * 9 6 5 11 11 C 1.46899 * 111.00122 * 293.95103 * 10 9 6 12 12 C 1.46901 * 110.99916 * 169.99572 * 10 9 6 13 13 C 1.50701 * 109.47460 * 190.00111 * 12 10 9 14 14 H 1.08003 * 119.99678 * 359.97438 * 13 12 10 15 15 C 1.37874 * 120.00415 * 180.02562 * 13 12 10 16 16 N 1.31513 * 119.99774 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00220 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47202 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47054 * 119.99846 * 17 15 13 20 20 H 1.48504 * 109.47545 * 240.00112 * 17 15 13 21 21 C 1.50701 * 109.47029 * 120.00019 * 2 1 3 22 22 C 1.34043 * 124.90941 * 260.00072 * 21 2 1 23 23 C 1.46633 * 106.17328 * 179.97438 * 22 21 2 24 24 C 1.39143 * 135.26129 * 179.97438 * 23 22 21 25 25 N 1.31762 * 120.09639 * 180.02562 * 24 23 22 26 26 C 1.32246 * 122.11328 * 0.02562 * 25 24 23 27 27 C 1.37803 * 121.51996 * 0.02562 * 26 25 24 28 28 C 1.39151 * 118.91535 * 359.97438 * 27 26 25 29 29 O 1.34369 * 134.63431 * 180.34908 * 28 27 26 30 30 H 1.09004 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47715 * 300.00076 * 1 2 3 32 32 H 1.09004 * 109.46862 * 60.00023 * 1 2 3 33 33 H 1.00900 * 110.99964 * 321.04966 * 4 2 1 34 34 H 1.08997 * 109.47355 * 300.00567 * 5 4 2 35 35 H 1.09003 * 109.47178 * 60.00051 * 5 4 2 36 36 H 0.96701 * 113.99212 * 60.00298 * 8 6 5 37 37 H 1.09003 * 109.46696 * 300.00006 * 9 6 5 38 38 H 1.09003 * 109.47283 * 59.99642 * 9 6 5 39 39 H 1.08996 * 109.46716 * 60.00492 * 11 10 9 40 40 H 1.09004 * 109.46940 * 179.97438 * 11 10 9 41 41 H 1.08998 * 109.47285 * 300.00015 * 11 10 9 42 42 H 1.08999 * 109.47429 * 310.00102 * 12 10 9 43 43 H 1.09007 * 109.46904 * 70.00289 * 12 10 9 44 44 H 0.97007 * 119.99714 * 180.02562 * 16 15 13 45 45 H 1.07996 * 126.91143 * 359.97438 * 22 21 2 46 46 H 1.08009 * 119.94949 * 0.03335 * 24 23 22 47 47 H 1.08004 * 119.23811 * 179.97438 * 26 25 24 48 48 H 1.08000 * 120.53968 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5951 -0.5332 -3.5745 7 1 3.5507 -1.0020 -3.3396 8 8 1.6494 -1.5387 -3.9441 9 6 2.7791 0.4456 -4.7359 10 7 3.2719 -0.2799 -5.9143 11 6 4.6241 -0.8047 -5.6820 12 6 3.2361 0.5724 -7.1102 13 6 3.5104 -0.2653 -8.3326 14 1 3.6935 -1.3248 -8.2311 15 6 3.5288 0.3211 -9.5803 16 7 3.3074 1.6115 -9.7037 17 14 3.8695 -0.7172 -11.0953 18 1 4.0851 -2.1293 -10.6894 19 1 2.7096 -0.6399 -12.0194 20 1 5.0840 -0.2080 -11.7816 21 6 2.0322 -0.7104 1.2305 22 6 2.4679 -0.1027 2.3430 23 6 2.8530 -1.1727 3.2687 24 6 3.3699 -1.2243 4.5596 25 7 3.6139 -2.3879 5.1276 26 6 3.3839 -3.5340 4.5092 27 6 2.8740 -3.5726 3.2296 28 6 2.5967 -2.3740 2.5794 29 8 2.1042 -2.0464 1.3729 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.4496 -1.4979 -1.4101 34 1 1.0872 0.6163 -2.5525 35 1 2.7589 1.0462 -2.1182 36 1 0.7744 -1.1925 -4.1669 37 1 1.8235 0.9144 -4.9707 38 1 3.5005 1.2126 -4.4539 39 1 4.6078 -1.4876 -4.8327 40 1 4.9645 -1.3376 -6.5699 41 1 5.3032 0.0214 -5.4711 42 1 2.2523 1.0331 -7.1989 43 1 3.9952 1.3501 -7.0249 44 1 3.3199 2.0240 -10.5816 45 1 2.5239 0.9609 2.5215 46 1 3.5712 -0.3092 5.0968 47 1 3.6014 -4.4612 5.0186 48 1 2.6926 -4.5177 2.7393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872239794.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:39 Heat of formation + Delta-G solvation = -3.386313 kcal Electronic energy + Delta-G solvation = -27633.267124 eV Core-core repulsion = 23689.811121 eV Total energy + Delta-G solvation = -3943.456003 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.00373 -39.39666 -38.55413 -36.82717 -35.37777 -33.35626 -32.54766 -32.03881 -31.58490 -29.55618 -28.73076 -27.07991 -25.92689 -24.76181 -23.85180 -23.41268 -22.06961 -21.56037 -21.20705 -20.18220 -18.23167 -17.47343 -16.69209 -16.62399 -16.26673 -16.11477 -15.99083 -15.21464 -15.02945 -14.82332 -14.76200 -14.59300 -14.12851 -13.96597 -13.76522 -13.58450 -13.46613 -13.36332 -13.10314 -12.64350 -12.25882 -12.16229 -11.94300 -11.89664 -11.75192 -11.35844 -11.15759 -10.89198 -10.76513 -10.67200 -10.62669 -10.32638 -10.07147 -10.03847 -9.70660 -9.65378 -9.13694 -8.82673 -8.57946 -8.45327 -7.21558 -6.04241 -4.05029 0.36166 0.92685 1.89380 2.20915 3.30488 3.37860 3.40773 3.43576 3.56111 3.98315 4.05289 4.20009 4.41501 4.48803 4.54658 4.60956 4.61632 4.67825 4.84131 4.86821 5.01966 5.07533 5.15018 5.24139 5.28370 5.30677 5.32817 5.42218 5.48511 5.54555 5.61386 5.67504 5.70396 5.88269 6.03360 6.07719 6.19144 6.29111 6.37403 6.56126 6.74812 6.77865 7.05816 7.24981 7.31216 7.56362 7.79104 7.91913 8.08158 8.18786 8.54003 9.03471 9.59360 11.06757 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026382 B = 0.001778 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.084293 B =15739.913290 C =16163.686437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.157 3.843 3 H 0.113 0.887 4 N -0.678 5.678 5 C 0.027 3.973 6 C 0.114 3.886 7 H 0.104 0.896 8 O -0.545 6.545 9 C 0.025 3.975 10 N -0.529 5.529 11 C 0.036 3.964 12 C 0.192 3.808 13 C -0.505 4.505 14 H 0.065 0.935 15 C 0.053 3.947 16 N -0.900 5.900 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.067 3.933 22 C -0.200 4.200 23 C -0.182 4.182 24 C 0.157 3.843 25 N -0.494 5.494 26 C 0.105 3.895 27 C -0.155 4.155 28 C 0.087 3.913 29 O -0.174 6.174 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.356 0.644 34 H 0.038 0.962 35 H 0.082 0.918 36 H 0.367 0.633 37 H 0.069 0.931 38 H 0.029 0.971 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.008 0.992 42 H 0.028 0.972 43 H -0.011 1.011 44 H 0.260 0.740 45 H 0.163 0.837 46 H 0.162 0.838 47 H 0.167 0.833 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.832 -3.209 28.163 28.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.046 3.954 3 H 0.130 0.870 4 N -0.310 5.310 5 C -0.103 4.103 6 C 0.054 3.946 7 H 0.122 0.878 8 O -0.349 6.349 9 C -0.105 4.105 10 N -0.253 5.253 11 C -0.112 4.112 12 C 0.067 3.933 13 C -0.543 4.543 14 H 0.083 0.917 15 C -0.148 4.148 16 N -0.540 5.540 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.211 1.211 21 C 0.019 3.981 22 C -0.221 4.221 23 C -0.185 4.185 24 C -0.006 4.006 25 N -0.204 5.204 26 C -0.046 4.046 27 C -0.176 4.176 28 C 0.032 3.968 29 O -0.073 6.073 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.177 0.823 34 H 0.056 0.944 35 H 0.100 0.900 36 H 0.213 0.787 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.027 0.973 42 H 0.046 0.954 43 H 0.007 0.993 44 H 0.070 0.930 45 H 0.180 0.820 46 H 0.179 0.821 47 H 0.184 0.816 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.729 -4.076 28.802 29.327 hybrid contribution -0.945 0.994 -1.884 2.330 sum -4.674 -3.082 26.918 27.494 Atomic orbital electron populations 1.22547 0.94941 1.03398 1.03365 1.20247 0.93378 0.96354 0.85406 0.86968 1.60423 1.57637 1.09980 1.02936 1.22778 1.00400 0.95834 0.91247 1.21976 0.93442 0.89166 0.90062 0.87848 1.86618 1.23866 1.34667 1.89712 1.22695 1.00459 0.94831 0.92490 1.62015 1.22794 1.37948 1.02561 1.22252 0.89385 0.98256 1.01333 1.19752 0.96359 0.91086 0.86097 1.21214 1.47258 0.95339 0.90508 0.91714 1.25000 0.95565 0.95009 0.99185 1.69971 1.50362 1.09995 1.23698 0.86432 0.77737 0.80541 0.82670 1.19603 1.21028 1.21137 1.22493 0.99153 0.79678 0.96791 1.22106 1.07712 0.99507 0.92794 1.20944 1.06223 0.93672 0.97684 1.22305 0.92236 0.96347 0.89722 1.67767 1.17637 0.98131 1.36862 1.22532 0.94698 0.96720 0.90643 1.21036 1.04698 0.95787 0.96062 1.19788 0.96986 0.95644 0.84411 1.83957 1.67670 1.24200 1.31446 0.91581 0.91296 0.90994 0.82316 0.94363 0.90005 0.78667 0.91300 0.95270 0.93369 0.90701 0.97321 0.95418 0.99294 0.93023 0.81987 0.82123 0.81614 0.83841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 9.14 37.15 0.34 -0.86 16 2 C 0.16 1.24 3.02 -68.86 -0.21 1.03 16 3 H 0.11 0.74 7.78 -51.93 -0.40 0.33 16 4 N -0.68 -6.68 6.21 -107.95 -0.67 -7.36 16 5 C 0.03 0.27 5.16 -3.83 -0.02 0.25 16 6 C 0.11 1.53 3.08 -26.73 -0.08 1.45 16 7 H 0.10 1.56 6.55 -51.93 -0.34 1.22 16 8 O -0.54 -7.86 12.72 -35.23 -0.45 -8.31 16 9 C 0.03 0.42 4.62 -3.83 -0.02 0.40 16 10 N -0.53 -11.30 4.62 -244.37 -1.13 -12.43 16 11 C 0.04 0.72 9.14 60.06 0.55 1.27 16 12 C 0.19 4.98 4.72 -4.97 -0.02 4.96 16 13 C -0.50 -14.25 8.46 -34.44 -0.29 -14.54 16 14 H 0.06 1.83 7.12 -52.48 -0.37 1.46 16 15 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 16 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 17 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 C 0.07 0.64 6.09 -35.78 -0.22 0.43 16 22 C -0.20 -1.74 10.99 -37.67 -0.41 -2.15 16 23 C -0.18 -1.81 6.44 -105.19 -0.68 -2.48 16 24 C 0.16 1.41 11.26 -17.25 -0.19 1.21 16 25 N -0.49 -4.83 10.35 -13.06 -0.14 -4.96 16 26 C 0.10 0.85 11.14 -17.53 -0.20 0.66 16 27 C -0.16 -1.35 10.13 -39.40 -0.40 -1.75 16 28 C 0.09 0.93 7.49 -38.25 -0.29 0.65 16 29 O -0.17 -1.97 10.54 4.87 0.05 -1.92 16 30 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.43 7.45 -51.93 -0.39 0.05 16 33 H 0.36 3.68 8.03 -39.29 -0.32 3.37 16 34 H 0.04 0.33 7.44 -51.93 -0.39 -0.05 16 35 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 36 H 0.37 4.21 9.05 45.56 0.41 4.63 16 37 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 38 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 39 H 0.05 0.85 6.47 -51.93 -0.34 0.51 16 40 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 41 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 43 H -0.01 -0.30 8.12 -51.92 -0.42 -0.72 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 46 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 47 H 0.17 0.82 8.06 -52.48 -0.42 0.39 16 48 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 396.69 15.07 5.98 5.98 Total: -1.00 -33.48 396.69 -9.54 -43.01 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.66 Total: 3.30 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -2.24 Total: -8.06 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -1.20 Total: -50.72 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -0.40 Total: -10.23 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.48 -9.54 -43.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872239794.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.625 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds