Wall clock time and date at job start Tue Mar 31 2020 18:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47250 * 2 1 4 4 N 1.46906 * 109.47378 * 239.99874 * 2 1 3 5 5 C 1.46900 * 110.99927 * 85.00135 * 4 2 1 6 6 C 1.52998 * 109.47282 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.46718 * 304.99897 * 6 5 4 8 8 O 1.42902 * 109.47163 * 64.99677 * 6 5 4 9 9 C 1.52996 * 109.47375 * 185.00190 * 6 5 4 10 10 N 1.46894 * 109.47160 * 179.97438 * 9 6 5 11 11 C 1.46899 * 111.00122 * 293.95103 * 10 9 6 12 12 C 1.46901 * 110.99916 * 169.99572 * 10 9 6 13 13 C 1.50701 * 109.47460 * 190.00111 * 12 10 9 14 14 H 1.08003 * 119.99678 * 359.97438 * 13 12 10 15 15 C 1.37874 * 120.00415 * 180.02562 * 13 12 10 16 16 N 1.31513 * 119.99774 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00220 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47202 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47054 * 119.99846 * 17 15 13 20 20 H 1.48504 * 109.47545 * 240.00112 * 17 15 13 21 21 C 1.50701 * 109.47029 * 120.00019 * 2 1 3 22 22 C 1.34043 * 124.90941 * 260.00072 * 21 2 1 23 23 C 1.46633 * 106.17328 * 179.97438 * 22 21 2 24 24 C 1.39143 * 135.26129 * 179.97438 * 23 22 21 25 25 N 1.31762 * 120.09639 * 180.02562 * 24 23 22 26 26 C 1.32246 * 122.11328 * 0.02562 * 25 24 23 27 27 C 1.37803 * 121.51996 * 0.02562 * 26 25 24 28 28 C 1.39151 * 118.91535 * 359.97438 * 27 26 25 29 29 O 1.34369 * 134.63431 * 180.34908 * 28 27 26 30 30 H 1.09004 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47715 * 300.00076 * 1 2 3 32 32 H 1.09004 * 109.46862 * 60.00023 * 1 2 3 33 33 H 1.00900 * 110.99964 * 321.04966 * 4 2 1 34 34 H 1.08997 * 109.47355 * 300.00567 * 5 4 2 35 35 H 1.09003 * 109.47178 * 60.00051 * 5 4 2 36 36 H 0.96701 * 113.99212 * 60.00298 * 8 6 5 37 37 H 1.09003 * 109.46696 * 300.00006 * 9 6 5 38 38 H 1.09003 * 109.47283 * 59.99642 * 9 6 5 39 39 H 1.08996 * 109.46716 * 60.00492 * 11 10 9 40 40 H 1.09004 * 109.46940 * 179.97438 * 11 10 9 41 41 H 1.08998 * 109.47285 * 300.00015 * 11 10 9 42 42 H 1.08999 * 109.47429 * 310.00102 * 12 10 9 43 43 H 1.09007 * 109.46904 * 70.00289 * 12 10 9 44 44 H 0.97007 * 119.99714 * 180.02562 * 16 15 13 45 45 H 1.07996 * 126.91143 * 359.97438 * 22 21 2 46 46 H 1.08009 * 119.94949 * 0.03335 * 24 23 22 47 47 H 1.08004 * 119.23811 * 179.97438 * 26 25 24 48 48 H 1.08000 * 120.53968 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5951 -0.5332 -3.5745 7 1 3.5507 -1.0020 -3.3396 8 8 1.6494 -1.5387 -3.9441 9 6 2.7791 0.4456 -4.7359 10 7 3.2719 -0.2799 -5.9143 11 6 4.6241 -0.8047 -5.6820 12 6 3.2361 0.5724 -7.1102 13 6 3.5104 -0.2653 -8.3326 14 1 3.6935 -1.3248 -8.2311 15 6 3.5288 0.3211 -9.5803 16 7 3.3074 1.6115 -9.7037 17 14 3.8695 -0.7172 -11.0953 18 1 4.0851 -2.1293 -10.6894 19 1 2.7096 -0.6399 -12.0194 20 1 5.0840 -0.2080 -11.7816 21 6 2.0322 -0.7104 1.2305 22 6 2.4679 -0.1027 2.3430 23 6 2.8530 -1.1727 3.2687 24 6 3.3699 -1.2243 4.5596 25 7 3.6139 -2.3879 5.1276 26 6 3.3839 -3.5340 4.5092 27 6 2.8740 -3.5726 3.2296 28 6 2.5967 -2.3740 2.5794 29 8 2.1042 -2.0464 1.3729 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.4496 -1.4979 -1.4101 34 1 1.0872 0.6163 -2.5525 35 1 2.7589 1.0462 -2.1182 36 1 0.7744 -1.1925 -4.1669 37 1 1.8235 0.9144 -4.9707 38 1 3.5005 1.2126 -4.4539 39 1 4.6078 -1.4876 -4.8327 40 1 4.9645 -1.3376 -6.5699 41 1 5.3032 0.0214 -5.4711 42 1 2.2523 1.0331 -7.1989 43 1 3.9952 1.3501 -7.0249 44 1 3.3199 2.0240 -10.5816 45 1 2.5239 0.9609 2.5215 46 1 3.5712 -0.3092 5.0968 47 1 3.6014 -4.4612 5.0186 48 1 2.6926 -4.5177 2.7393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872239794.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:38 Heat of formation + Delta-G solvation = -29.367716 kcal Electronic energy + Delta-G solvation = -27634.393762 eV Core-core repulsion = 23689.811121 eV Total energy + Delta-G solvation = -3944.582641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.68250 -40.07424 -39.64748 -37.92295 -36.69531 -34.62069 -34.04471 -32.77545 -32.35437 -30.61918 -29.63208 -28.86251 -27.26464 -25.72826 -24.83921 -24.40107 -22.92836 -22.52674 -22.10752 -21.69040 -18.89177 -18.57864 -18.20372 -17.36243 -17.34612 -17.16141 -16.82094 -16.71558 -16.11351 -15.87561 -15.67884 -15.55558 -15.42148 -15.05107 -14.85486 -14.49505 -14.39445 -14.10829 -13.99299 -13.80566 -13.74915 -13.27451 -13.11455 -12.85511 -12.73685 -12.57939 -12.52623 -12.46200 -12.39449 -12.35267 -12.01943 -11.61650 -11.39828 -11.27527 -10.75929 -10.71884 -10.63000 -10.40313 -9.53235 -9.22847 -8.95937 -8.21631 -6.31056 -0.27756 0.22201 1.24607 1.40104 1.40877 1.54699 1.56714 2.39587 2.74683 2.79589 3.10830 3.24058 3.45188 3.46579 3.57890 3.70935 3.90449 3.94394 3.99954 4.05375 4.09354 4.15496 4.25692 4.31476 4.44110 4.47508 4.54736 4.64352 4.69534 4.72349 4.74010 4.77336 4.80308 4.85092 5.00032 5.06428 5.13623 5.16831 5.17819 5.28059 5.32415 5.47206 5.64582 5.85089 6.04574 6.07308 6.29065 6.31945 6.64111 6.85327 6.91600 6.97747 7.38690 8.89364 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026382 B = 0.001778 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.084293 B =15739.913290 C =16163.686437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.160 3.840 3 H 0.130 0.870 4 N -0.689 5.689 5 C 0.040 3.960 6 C 0.127 3.873 7 H 0.089 0.911 8 O -0.561 6.561 9 C 0.024 3.976 10 N -0.540 5.540 11 C 0.041 3.959 12 C 0.207 3.793 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.278 1.278 21 C 0.050 3.950 22 C -0.196 4.196 23 C -0.199 4.199 24 C 0.152 3.848 25 N -0.514 5.514 26 C 0.103 3.897 27 C -0.163 4.163 28 C 0.059 3.941 29 O -0.194 6.194 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.352 0.648 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.380 0.620 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.011 0.989 42 H 0.007 0.993 43 H -0.039 1.039 44 H 0.264 0.736 45 H 0.189 0.811 46 H 0.186 0.814 47 H 0.196 0.804 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 -3.404 29.193 29.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.050 3.950 3 H 0.148 0.852 4 N -0.321 5.321 5 C -0.090 4.090 6 C 0.067 3.933 7 H 0.107 0.893 8 O -0.367 6.367 9 C -0.105 4.105 10 N -0.263 5.263 11 C -0.107 4.107 12 C 0.081 3.919 13 C -0.561 4.561 14 H 0.078 0.922 15 C -0.197 4.197 16 N -0.574 5.574 17 Si 0.793 3.207 18 H -0.190 1.190 19 H -0.203 1.203 20 H -0.204 1.204 21 C 0.002 3.998 22 C -0.216 4.216 23 C -0.202 4.202 24 C -0.010 4.010 25 N -0.224 5.224 26 C -0.047 4.047 27 C -0.183 4.183 28 C 0.004 3.996 29 O -0.093 6.093 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.172 0.828 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.228 0.772 37 H 0.091 0.909 38 H 0.052 0.948 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.029 0.971 42 H 0.025 0.975 43 H -0.021 1.021 44 H 0.073 0.927 45 H 0.207 0.793 46 H 0.203 0.797 47 H 0.213 0.787 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.947 -4.269 29.859 30.420 hybrid contribution -0.881 1.038 -2.109 2.510 sum -4.828 -3.231 27.750 28.351 Atomic orbital electron populations 1.22487 0.93900 1.02994 1.04224 1.20354 0.94139 0.96607 0.83852 0.85225 1.60358 1.58234 1.10104 1.03402 1.22574 1.01383 0.95313 0.89697 1.21774 0.93134 0.88282 0.90147 0.89303 1.86581 1.24798 1.35422 1.89903 1.22823 1.00373 0.95559 0.91723 1.61921 1.23713 1.37683 1.03028 1.22202 0.88715 0.98522 1.01272 1.19403 0.94028 0.90576 0.87900 1.21506 1.47477 0.95336 0.91817 0.92229 1.25893 0.95128 0.96227 1.02420 1.70081 1.51029 1.11617 1.24696 0.85345 0.77837 0.78917 0.78580 1.19006 1.20267 1.20371 1.22877 0.99936 0.79251 0.97770 1.22462 1.06545 1.00551 0.92046 1.21223 1.06734 0.93947 0.98262 1.22725 0.91564 0.97133 0.89592 1.67826 1.18310 0.98826 1.37480 1.23046 0.93668 0.97443 0.90510 1.21343 1.04561 0.96084 0.96351 1.20257 0.97830 0.96865 0.84661 1.83924 1.68166 1.25309 1.31927 0.92628 0.90274 0.90214 0.82817 0.92557 0.89126 0.77202 0.90942 0.94799 0.90857 0.92810 0.97056 0.97511 1.02117 0.92681 0.79340 0.79738 0.78724 0.82197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 9.14 71.98 0.66 -1.32 16 2 C 0.16 2.23 3.02 44.17 0.13 2.37 16 3 H 0.13 1.33 7.78 -2.39 -0.02 1.31 16 4 N -0.69 -12.54 6.21 -495.45 -3.08 -15.62 16 5 C 0.04 0.71 5.16 86.30 0.44 1.16 16 6 C 0.13 3.26 3.08 30.59 0.09 3.36 16 7 H 0.09 2.57 6.55 -2.39 -0.02 2.56 16 8 O -0.56 -15.57 12.72 -148.98 -1.90 -17.46 16 9 C 0.02 0.79 4.62 86.30 0.40 1.19 16 10 N -0.54 -23.16 4.62 -927.06 -4.28 -27.44 16 11 C 0.04 1.64 9.14 127.69 1.17 2.81 16 12 C 0.21 11.02 4.72 85.56 0.40 11.43 16 13 C -0.52 -30.00 8.46 25.60 0.22 -29.78 16 14 H 0.06 3.41 7.12 -2.91 -0.02 3.39 16 15 C 0.00 0.07 5.46 84.65 0.46 0.53 16 16 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 17 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 C 0.05 0.89 6.09 24.73 0.15 1.04 16 22 C -0.20 -3.10 10.99 23.51 0.26 -2.84 16 23 C -0.20 -3.78 6.44 -20.23 -0.13 -3.91 16 24 C 0.15 2.57 11.26 84.92 0.96 3.53 16 25 N -0.51 -9.51 10.35 -195.22 -2.02 -11.53 16 26 C 0.10 1.57 11.14 84.53 0.94 2.51 16 27 C -0.16 -2.75 10.13 22.39 0.23 -2.52 16 28 C 0.06 1.25 7.49 23.13 0.17 1.42 16 29 O -0.19 -4.37 10.54 -5.47 -0.06 -4.43 16 30 H 0.05 0.74 8.13 -2.39 -0.02 0.72 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.77 7.45 -2.38 -0.02 0.75 16 33 H 0.35 6.93 8.03 -89.69 -0.72 6.21 16 34 H 0.06 0.83 7.44 -2.39 -0.02 0.81 16 35 H 0.09 1.50 8.06 -2.39 -0.02 1.48 16 36 H 0.38 8.23 9.05 -74.06 -0.67 7.56 16 37 H 0.07 2.29 7.93 -2.39 -0.02 2.27 16 38 H 0.03 1.08 8.12 -2.39 -0.02 1.06 16 39 H 0.07 2.52 6.47 -2.39 -0.02 2.51 16 40 H 0.05 2.33 6.76 -2.38 -0.02 2.32 16 41 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.01 0.38 7.93 -2.39 -0.02 0.36 16 43 H -0.04 -2.24 8.12 -2.38 -0.02 -2.26 16 44 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 45 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 46 H 0.19 1.95 8.06 -2.91 -0.02 1.93 16 47 H 0.20 1.56 8.06 -2.91 -0.02 1.54 16 48 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -72.95 396.69 -2.88 -75.83 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -0.41 Total: 18.76 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 6.56 Total: -9.03 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -9.10 Total: -110.33 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -1.95 Total: -21.89 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -72.95 -2.88 -75.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872239794.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.462 kcal (2) G-P(sol) polarization free energy of solvation -72.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds