Wall clock time and date at job start Tue Mar 31 2020 18:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47104 * 2 1 4 4 N 1.46900 * 109.47024 * 239.99747 * 2 1 3 5 5 C 1.46903 * 111.00131 * 85.00563 * 4 2 1 6 6 C 1.52998 * 109.47302 * 180.02562 * 5 4 2 7 7 H 1.08992 * 109.47135 * 59.99463 * 6 5 4 8 8 O 1.42897 * 109.46674 * 299.99470 * 6 5 4 9 9 C 1.53004 * 109.46799 * 179.97438 * 6 5 4 10 10 N 1.46898 * 109.46619 * 184.99872 * 9 6 5 11 11 C 1.46901 * 111.00443 * 66.04574 * 10 9 6 12 12 C 1.46906 * 110.99820 * 189.99887 * 10 9 6 13 13 C 1.50696 * 109.47351 * 169.99890 * 12 10 9 14 14 H 1.08007 * 119.99780 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00506 * 180.02562 * 13 12 10 16 16 N 1.31515 * 119.99253 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00341 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47238 * 59.99702 * 17 15 13 19 19 H 1.48503 * 109.47230 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47102 * 299.99648 * 17 15 13 21 21 C 1.50700 * 109.47094 * 120.00245 * 2 1 3 22 22 C 1.34040 * 124.90956 * 259.72288 * 21 2 1 23 23 C 1.46626 * 106.17595 * 179.86338 * 22 21 2 24 24 C 1.39142 * 135.25417 * 180.09001 * 23 22 21 25 25 N 1.31764 * 120.09652 * 180.30165 * 24 23 22 26 26 C 1.32257 * 122.10957 * 0.02562 * 25 24 23 27 27 C 1.37797 * 121.51841 * 0.02562 * 26 25 24 28 28 C 1.39164 * 118.92102 * 359.97438 * 27 26 25 29 29 O 1.34367 * 134.63869 * 180.02562 * 28 27 26 30 30 H 1.09002 * 109.47180 * 300.00050 * 1 2 3 31 31 H 1.08999 * 109.47055 * 60.00404 * 1 2 3 32 32 H 1.09004 * 109.47246 * 180.02562 * 1 2 3 33 33 H 1.00904 * 111.00509 * 321.04403 * 4 2 1 34 34 H 1.08996 * 109.47237 * 59.99345 * 5 4 2 35 35 H 1.09009 * 109.46499 * 299.99967 * 5 4 2 36 36 H 0.96701 * 114.00549 * 300.00026 * 8 6 5 37 37 H 1.08994 * 109.47270 * 64.99737 * 9 6 5 38 38 H 1.08999 * 109.47017 * 304.99614 * 9 6 5 39 39 H 1.09002 * 109.47401 * 183.95136 * 11 10 9 40 40 H 1.09001 * 109.46874 * 63.95149 * 11 10 9 41 41 H 1.09004 * 109.46970 * 303.95282 * 11 10 9 42 42 H 1.08997 * 109.46995 * 289.99871 * 12 10 9 43 43 H 1.09001 * 109.46848 * 49.99877 * 12 10 9 44 44 H 0.96999 * 119.99606 * 179.97438 * 16 15 13 45 45 H 1.08007 * 126.91368 * 359.97438 * 22 21 2 46 46 H 1.07998 * 119.95672 * 0.30560 * 24 23 22 47 47 H 1.07993 * 119.23903 * 179.97438 * 26 25 24 48 48 H 1.07996 * 120.53952 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0826 0.2225 -2.3469 6 6 2.5951 -0.5333 -3.5745 7 1 1.9184 -1.3566 -3.8029 8 8 3.8999 -1.0499 -3.3052 9 6 2.6600 0.4197 -4.7697 10 7 3.0369 -0.3312 -5.9747 11 6 1.9875 -1.2891 -6.3479 12 6 3.3401 0.5778 -7.0881 13 6 3.9541 -0.2031 -8.2213 14 1 4.1037 -1.2683 -8.1243 15 6 4.3249 0.4422 -9.3820 16 7 4.1422 1.7392 -9.5003 17 14 5.0853 -0.5260 -10.7869 18 1 4.1303 -1.5670 -11.2446 19 1 5.3919 0.3930 -11.9124 20 1 6.3377 -1.1737 -10.3209 21 6 2.0323 -0.7105 1.2304 22 6 2.4729 -0.1028 2.3410 23 6 2.8534 -1.1727 3.2685 24 6 3.3700 -1.2241 4.5595 25 7 3.6141 -2.3877 5.1276 26 6 3.3845 -3.5339 4.5091 27 6 2.8749 -3.5725 3.2294 28 6 2.5974 -2.3739 2.5791 29 8 2.1102 -2.0463 1.3705 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.4496 -1.4980 -1.4100 34 1 2.7589 1.0461 -2.1182 35 1 1.0871 0.6163 -2.5525 36 1 4.5557 -0.3714 -3.0935 37 1 3.4024 1.1941 -4.5771 38 1 1.6840 0.8813 -4.9197 39 1 2.3217 -1.8801 -7.2007 40 1 1.0797 -0.7478 -6.6144 41 1 1.7826 -1.9500 -5.5057 42 1 2.4206 1.0525 -7.4303 43 1 4.0406 1.3425 -6.7524 44 1 4.4034 2.1933 -10.3166 45 1 2.5336 0.9610 2.5178 46 1 3.5710 -0.3091 5.0967 47 1 3.6021 -4.4610 5.0185 48 1 2.6939 -4.5176 2.7391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872239797.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:41 Heat of formation + Delta-G solvation = -27.249932 kcal Electronic energy + Delta-G solvation = -27642.915947 eV Core-core repulsion = 23698.425140 eV Total energy + Delta-G solvation = -3944.490807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.67171 -40.05924 -39.60269 -37.91718 -36.68227 -34.61698 -34.04335 -32.76715 -32.34152 -30.58196 -29.63213 -28.85312 -27.27685 -25.71134 -24.83589 -24.39724 -22.91666 -22.58965 -22.10535 -21.66607 -18.88288 -18.56684 -18.19110 -17.36819 -17.32875 -17.07217 -16.80876 -16.68136 -16.04217 -15.88716 -15.84222 -15.49942 -15.40678 -14.93974 -14.89906 -14.50986 -14.41378 -14.13909 -13.94476 -13.83138 -13.74247 -13.27523 -13.03602 -12.86810 -12.72053 -12.58067 -12.53530 -12.44847 -12.41157 -12.36627 -11.98607 -11.61174 -11.40604 -11.26415 -10.73957 -10.67314 -10.61657 -10.39341 -9.48720 -9.21637 -8.94759 -8.21153 -6.30828 -0.26895 0.23043 1.25559 1.40543 1.43653 1.51615 1.57728 2.39727 2.75210 2.79477 3.11090 3.24586 3.46403 3.47344 3.58513 3.74518 3.89106 3.92977 3.98818 4.04881 4.07199 4.19809 4.30751 4.32040 4.42537 4.48639 4.52147 4.64915 4.67644 4.72115 4.74483 4.75214 4.81424 4.84349 5.00526 5.06056 5.14977 5.15538 5.17909 5.28866 5.31702 5.47851 5.64230 5.85271 6.04906 6.07930 6.26736 6.32656 6.64987 6.84936 6.92222 7.04456 7.38734 8.89390 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024606 B = 0.001798 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.660441 B =15573.102845 C =16041.809656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.161 3.839 3 H 0.130 0.870 4 N -0.683 5.683 5 C 0.039 3.961 6 C 0.127 3.873 7 H 0.090 0.910 8 O -0.557 6.557 9 C 0.025 3.975 10 N -0.543 5.543 11 C 0.041 3.959 12 C 0.208 3.792 13 C -0.525 4.525 14 H 0.059 0.941 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.968 3.032 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.270 1.270 21 C 0.051 3.949 22 C -0.197 4.197 23 C -0.198 4.198 24 C 0.152 3.848 25 N -0.514 5.514 26 C 0.103 3.897 27 C -0.163 4.163 28 C 0.059 3.941 29 O -0.193 6.193 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.347 0.653 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.378 0.622 37 H 0.069 0.931 38 H 0.036 0.964 39 H 0.052 0.948 40 H 0.011 0.989 41 H 0.077 0.923 42 H -0.038 1.038 43 H 0.005 0.995 44 H 0.265 0.735 45 H 0.189 0.811 46 H 0.185 0.815 47 H 0.196 0.804 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.154 -3.922 28.426 29.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.051 3.949 3 H 0.147 0.853 4 N -0.314 5.314 5 C -0.091 4.091 6 C 0.066 3.934 7 H 0.107 0.893 8 O -0.362 6.362 9 C -0.105 4.105 10 N -0.267 5.267 11 C -0.107 4.107 12 C 0.082 3.918 13 C -0.563 4.563 14 H 0.078 0.922 15 C -0.197 4.197 16 N -0.574 5.574 17 Si 0.793 3.207 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.195 1.195 21 C 0.003 3.997 22 C -0.217 4.217 23 C -0.201 4.201 24 C -0.011 4.011 25 N -0.225 5.225 26 C -0.047 4.047 27 C -0.183 4.183 28 C 0.004 3.996 29 O -0.093 6.093 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.166 0.834 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.225 0.775 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.030 0.970 41 H 0.095 0.905 42 H -0.020 1.020 43 H 0.023 0.977 44 H 0.073 0.927 45 H 0.206 0.794 46 H 0.202 0.798 47 H 0.213 0.787 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.091 -4.815 29.056 30.293 hybrid contribution -1.319 0.972 -2.199 2.742 sum -8.409 -3.843 26.857 28.404 Atomic orbital electron populations 1.22501 0.93958 1.03031 1.04207 1.20344 0.94044 0.96602 0.83901 0.85280 1.60310 1.57952 1.09733 1.03389 1.22602 1.01342 0.95412 0.89722 1.21780 0.85458 0.95524 0.90599 0.89268 1.86568 1.19683 1.37994 1.91935 1.22829 0.99410 0.96445 0.91768 1.61920 1.41431 1.18490 1.04841 1.22220 0.91710 0.95970 1.00843 1.19388 0.93119 0.90982 0.88313 1.21448 1.40222 0.95144 0.99532 0.92244 1.25899 0.96417 0.95957 1.01389 1.70067 1.49111 1.09749 1.28444 0.85451 0.79044 0.78275 0.77939 1.19320 1.20683 1.19490 1.22872 0.99816 0.79234 0.97750 1.22458 1.06540 1.00527 0.92190 1.21218 1.06720 0.93966 0.98245 1.22721 0.91583 0.97126 0.89624 1.67830 1.18296 0.98827 1.37502 1.23041 0.93694 0.97436 0.90543 1.21338 1.04555 0.96087 0.96346 1.20251 0.97925 0.96849 0.84577 1.83921 1.68376 1.25322 1.31643 0.90283 0.90273 0.92528 0.83372 0.89353 0.92405 0.77457 0.91226 0.94603 0.92893 0.97015 0.90494 1.01989 0.97730 0.92674 0.79394 0.79762 0.78744 0.82210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 9.14 71.98 0.66 -1.27 16 2 C 0.16 2.20 3.02 44.17 0.13 2.34 16 3 H 0.13 1.32 7.77 -2.39 -0.02 1.30 16 4 N -0.68 -12.17 6.08 -495.45 -3.01 -15.18 16 5 C 0.04 0.68 5.15 86.30 0.44 1.13 16 6 C 0.13 3.24 3.13 30.60 0.10 3.33 16 7 H 0.09 2.35 6.26 -2.39 -0.01 2.34 16 8 O -0.56 -16.80 13.15 -148.98 -1.96 -18.76 16 9 C 0.02 0.80 4.60 86.30 0.40 1.20 16 10 N -0.54 -23.28 4.70 -927.04 -4.36 -27.64 16 11 C 0.04 1.57 9.17 127.69 1.17 2.75 16 12 C 0.21 11.11 4.72 85.55 0.40 11.52 16 13 C -0.53 -30.20 8.52 25.60 0.22 -29.98 16 14 H 0.06 3.39 7.10 -2.91 -0.02 3.37 16 15 C 0.00 0.08 5.46 84.65 0.46 0.54 16 16 N -0.93 -56.16 13.29 21.45 0.28 -55.87 16 17 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 C 0.05 0.92 6.09 24.73 0.15 1.07 16 22 C -0.20 -3.14 10.99 23.50 0.26 -2.88 16 23 C -0.20 -3.82 6.44 -20.23 -0.13 -3.95 16 24 C 0.15 2.61 11.26 84.92 0.96 3.56 16 25 N -0.51 -9.65 10.35 -195.23 -2.02 -11.67 16 26 C 0.10 1.59 11.14 84.52 0.94 2.53 16 27 C -0.16 -2.78 10.13 22.39 0.23 -2.55 16 28 C 0.06 1.26 7.49 23.13 0.17 1.44 16 29 O -0.19 -4.36 10.54 -5.49 -0.06 -4.42 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 0.74 7.45 -2.39 -0.02 0.72 16 32 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 33 H 0.35 6.39 8.47 -89.69 -0.76 5.63 16 34 H 0.09 1.43 8.05 -2.39 -0.02 1.41 16 35 H 0.06 0.85 7.44 -2.38 -0.02 0.84 16 36 H 0.38 9.55 9.05 -74.06 -0.67 8.88 16 37 H 0.07 2.26 7.93 -2.39 -0.02 2.24 16 38 H 0.04 1.11 8.12 -2.39 -0.02 1.09 16 39 H 0.05 2.24 6.86 -2.39 -0.02 2.23 16 40 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.08 2.47 6.21 -2.38 -0.01 2.45 16 42 H -0.04 -2.15 8.12 -2.39 -0.02 -2.17 16 43 H 0.00 0.26 7.93 -2.39 -0.02 0.24 16 44 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 45 H 0.19 1.77 8.06 -2.91 -0.02 1.74 16 46 H 0.19 2.00 8.06 -2.91 -0.02 1.98 16 47 H 0.20 1.61 8.06 -2.91 -0.02 1.59 16 48 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -73.74 397.13 -2.99 -76.73 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -0.45 Total: 19.31 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 6.56 Total: -9.23 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -9.11 Total: -110.36 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -2.02 Total: -23.18 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -73.74 -2.99 -76.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872239797.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.479 kcal (2) G-P(sol) polarization free energy of solvation -73.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds