Wall clock time and date at job start Tue Mar 31 2020 17:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.62448 * 2 1 4 4 C 1.53231 * 109.79436 * 239.50842 * 2 1 3 5 5 N 1.46900 * 109.34567 * 186.36683 * 4 2 1 6 6 C 1.46896 * 111.00240 * 187.25518 * 5 4 2 7 7 C 1.50699 * 109.47358 * 295.83950 * 6 5 4 8 8 O 1.21296 * 119.99711 * 4.33073 * 7 6 5 9 9 N 1.34774 * 120.00036 * 184.33418 * 7 6 5 10 10 C 1.40117 * 119.99739 * 184.44123 * 9 7 6 11 11 C 1.38851 * 120.01332 * 324.51027 * 10 9 7 12 12 C 1.38088 * 119.98213 * 179.74940 * 11 10 9 13 13 C 1.38717 * 120.01496 * 0.55052 * 12 11 10 14 14 O 1.35968 * 119.98382 * 179.72097 * 13 12 11 15 15 C 1.38722 * 120.02937 * 359.70402 * 13 12 11 16 16 C 1.38082 * 120.01705 * 0.02562 * 15 13 12 17 17 C 1.46899 * 111.26618 * 63.10186 * 5 4 2 18 18 C 1.53238 * 109.34331 * 296.90048 * 17 5 4 19 19 H 1.09008 * 109.78808 * 294.02591 * 18 17 5 20 20 C 1.52995 * 109.62975 * 173.54280 * 18 17 5 21 21 N 1.47077 * 108.52120 * 53.82873 * 18 17 5 22 22 C 1.36937 * 120.87867 * 128.84047 * 21 18 17 23 23 H 1.08003 * 119.99502 * 234.87801 * 22 21 18 24 24 C 1.38808 * 120.00383 * 54.87772 * 22 21 18 25 25 N 1.31618 * 119.99818 * 16.23435 * 24 22 21 26 26 Si 1.86792 * 120.00261 * 196.23712 * 24 22 21 27 27 H 1.48503 * 109.47390 * 59.99532 * 26 24 22 28 28 H 1.48497 * 109.47485 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47238 * 299.99964 * 26 24 22 30 30 H 1.08993 * 109.47300 * 296.31828 * 1 2 3 31 31 H 1.09003 * 109.46951 * 56.31827 * 1 2 3 32 32 H 1.08996 * 109.47159 * 176.31911 * 1 2 3 33 33 H 1.09003 * 109.49412 * 306.32771 * 4 2 1 34 34 H 1.09009 * 109.49181 * 66.40277 * 4 2 1 35 35 H 1.09000 * 109.47104 * 55.83627 * 6 5 4 36 36 H 1.09000 * 109.47201 * 175.83753 * 6 5 4 37 37 H 0.96995 * 120.00233 * 4.43821 * 9 7 6 38 38 H 1.08003 * 120.00442 * 0.02562 * 11 10 9 39 39 H 1.08003 * 119.99000 * 180.30208 * 12 11 10 40 40 H 0.96699 * 114.00356 * 269.97989 * 14 13 12 41 41 H 1.08010 * 119.99121 * 179.97438 * 15 13 12 42 42 H 1.08007 * 120.01337 * 180.02562 * 16 15 13 43 43 H 1.09002 * 109.49069 * 176.93562 * 17 5 4 44 44 H 1.08995 * 109.49121 * 56.86278 * 17 5 4 45 45 H 1.09002 * 109.46800 * 300.97104 * 20 18 17 46 46 H 1.08997 * 109.47320 * 60.96608 * 20 18 17 47 47 H 1.08999 * 109.47413 * 180.97220 * 20 18 17 48 48 H 0.97009 * 120.00058 * 184.93418 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0489 -0.7316 -1.2424 5 7 3.5098 -0.8597 -1.1570 6 6 4.0647 -1.4007 -2.4049 7 6 3.5539 -2.8027 -2.6156 8 8 2.7409 -3.2736 -1.8484 9 7 4.0004 -3.5333 -3.6564 10 6 3.4578 -4.8006 -3.9067 11 6 3.0804 -5.6160 -2.8481 12 6 2.5409 -6.8628 -3.0956 13 6 2.3865 -7.3053 -4.4012 14 8 1.8605 -8.5354 -4.6440 15 6 2.7683 -6.4933 -5.4591 16 6 3.3027 -5.2441 -5.2132 17 6 3.9063 -1.6805 -0.0050 18 6 3.4635 -0.9878 1.2882 19 1 4.0152 -0.0563 1.4154 20 6 3.7279 -1.9087 2.4810 21 7 2.0240 -0.7007 1.1951 22 6 1.1666 -1.0753 2.1949 23 1 0.3047 -1.6849 1.9669 24 6 1.4051 -0.6717 3.5015 25 7 2.2452 0.3122 3.7432 26 14 0.5340 -1.5249 4.9164 27 1 0.8859 -2.9676 4.9167 28 1 0.9584 -0.9121 6.2008 29 1 -0.9347 -1.3738 4.7568 30 1 -0.3633 0.4556 0.9211 31 1 -0.3633 0.5699 -0.8552 32 1 -0.3633 -1.0255 -0.0660 33 1 1.5993 -1.7232 -1.2949 34 1 1.7850 -0.1645 -2.1352 35 1 3.7579 -0.7727 -3.2413 36 1 5.1528 -1.4160 -2.3420 37 1 4.6973 -3.1817 -4.2322 38 1 3.2046 -5.2732 -1.8314 39 1 2.2427 -7.4951 -2.2723 40 1 2.5186 -9.2423 -4.6914 41 1 2.6482 -6.8387 -6.4755 42 1 3.5996 -4.6118 -6.0370 43 1 4.9895 -1.8016 -0.0003 44 1 3.4309 -2.6588 -0.0748 45 1 3.1806 -2.8419 2.3478 46 1 4.7952 -2.1198 2.5475 47 1 3.3962 -1.4206 3.3974 48 1 2.4668 0.5471 4.6580 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878774936.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:09 Heat of formation + Delta-G solvation = -2.729484 kcal Electronic energy + Delta-G solvation = -29777.983460 eV Core-core repulsion = 25834.555940 eV Total energy + Delta-G solvation = -3943.427520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.83884 -39.51782 -37.99483 -36.79828 -34.63079 -34.30910 -32.62868 -31.37089 -31.18448 -29.37087 -27.77772 -26.82859 -25.74313 -24.50041 -23.29296 -22.75623 -21.59016 -20.37436 -20.19921 -19.09413 -18.61709 -17.86775 -17.17907 -16.09659 -15.81582 -15.65699 -15.29325 -14.95819 -14.68022 -14.49302 -14.24699 -14.07263 -13.99743 -13.59231 -13.39815 -13.02912 -12.76578 -12.58264 -12.23195 -12.14842 -12.08651 -11.52247 -11.46008 -11.28603 -10.95847 -10.78305 -10.70996 -10.54412 -10.42606 -10.35438 -10.25910 -10.11218 -10.04545 -9.72892 -9.57450 -9.33496 -9.18579 -8.16893 -8.02061 -7.67879 -6.22399 -5.57742 -3.46443 0.96190 1.15857 2.52432 2.93868 3.39698 3.45094 3.47021 3.48573 4.03199 4.31822 4.52550 4.63496 4.74814 4.81395 5.11915 5.19960 5.33247 5.35774 5.37112 5.40028 5.46733 5.77216 5.88402 5.92880 6.07851 6.13194 6.16444 6.22850 6.28121 6.38180 6.48520 6.53390 6.58075 6.63422 6.71945 6.75747 6.84120 6.92378 7.05152 7.17743 7.28302 7.31409 7.43700 7.54501 7.61938 7.72482 7.82769 7.98308 8.12055 8.74626 9.34067 9.85172 10.66105 11.28280 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.003158 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.805355 B = 8863.731964 C = 9694.930805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.175 3.825 3 H 0.028 0.972 4 C 0.032 3.968 5 N -0.507 5.507 6 C 0.037 3.963 7 C 0.474 3.526 8 O -0.498 6.498 9 N -0.681 5.681 10 C 0.142 3.858 11 C -0.103 4.103 12 C -0.124 4.124 13 C 0.082 3.918 14 O -0.499 6.499 15 C -0.128 4.128 16 C -0.134 4.134 17 C 0.027 3.973 18 C 0.202 3.798 19 H 0.032 0.968 20 C -0.143 4.143 21 N -0.576 5.576 22 C -0.254 4.254 23 H 0.049 0.951 24 C 0.034 3.966 25 N -0.877 5.877 26 Si 0.882 3.118 27 H -0.280 1.280 28 H -0.290 1.290 29 H -0.279 1.279 30 H 0.067 0.933 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.408 0.592 38 H 0.144 0.856 39 H 0.131 0.869 40 H 0.386 0.614 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.050 0.950 44 H 0.059 0.941 45 H 0.040 0.960 46 H 0.020 0.980 47 H 0.093 0.907 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.223 -10.119 -18.793 22.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.069 3.931 3 H 0.045 0.955 4 C -0.097 4.097 5 N -0.228 5.228 6 C -0.096 4.096 7 C 0.261 3.739 8 O -0.370 6.370 9 N -0.328 5.328 10 C 0.047 3.953 11 C -0.123 4.123 12 C -0.143 4.143 13 C 0.037 3.963 14 O -0.309 6.309 15 C -0.147 4.147 16 C -0.155 4.155 17 C -0.101 4.101 18 C 0.096 3.904 19 H 0.050 0.950 20 C -0.201 4.201 21 N -0.301 5.301 22 C -0.385 4.385 23 H 0.066 0.934 24 C -0.168 4.168 25 N -0.517 5.517 26 Si 0.710 3.290 27 H -0.206 1.206 28 H -0.216 1.216 29 H -0.205 1.205 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.244 0.756 38 H 0.162 0.838 39 H 0.149 0.851 40 H 0.241 0.759 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.039 0.961 47 H 0.111 0.889 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.279 -9.418 -17.926 21.200 hybrid contribution 0.173 -1.379 0.228 1.408 sum 6.451 -10.797 -17.698 21.712 Atomic orbital electron populations 1.21692 0.95932 1.00688 1.00441 1.20491 0.92452 0.93751 0.86410 0.95452 1.22945 0.86299 1.01166 0.99247 1.62395 1.12555 1.47450 1.00406 1.22489 1.01544 0.88845 0.96681 1.23028 0.81565 0.89490 0.79768 1.90733 1.31952 1.71883 1.42481 1.44018 1.40719 1.15831 1.32257 1.17876 0.98544 0.85591 0.93261 1.21276 0.98815 0.92209 1.00042 1.21387 0.99585 0.96975 0.96390 1.18449 0.98739 0.87075 0.92019 1.84869 1.36520 1.15533 1.93983 1.21154 0.99705 0.94733 0.99116 1.20766 1.02661 0.97045 0.94978 1.23098 0.98003 0.96980 0.92064 1.20229 0.85851 0.94685 0.89677 0.94981 1.21991 0.96722 0.99481 1.01875 1.43941 1.02426 1.65580 1.18156 1.18623 1.07400 1.25810 0.86636 0.93388 1.25558 0.97594 0.94615 0.99018 1.70138 1.36647 1.25721 1.19237 0.86739 0.80148 0.79893 0.82190 1.20584 1.21569 1.20472 0.91418 0.94809 0.93447 0.92041 0.93029 0.87970 0.88114 0.75612 0.83802 0.85110 0.75853 0.85248 0.85368 0.93141 0.92317 0.94045 0.96091 0.88852 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 8.22 37.16 0.31 -2.41 16 2 C 0.18 3.96 3.65 -67.49 -0.25 3.71 16 3 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 4 C 0.03 0.62 4.50 -3.70 -0.02 0.61 16 5 N -0.51 -9.00 4.83 -235.77 -1.14 -10.14 16 6 C 0.04 0.46 5.84 -4.98 -0.03 0.44 16 7 C 0.47 6.47 7.08 -10.99 -0.08 6.39 16 8 O -0.50 -9.02 9.12 5.54 0.05 -8.97 16 9 N -0.68 -6.95 5.34 -9.83 -0.05 -7.01 16 10 C 0.14 1.64 6.29 -83.62 -0.53 1.12 16 11 C -0.10 -1.38 8.69 -39.41 -0.34 -1.72 16 12 C -0.12 -1.49 9.98 -39.46 -0.39 -1.89 16 13 C 0.08 0.89 6.70 -39.23 -0.26 0.63 16 14 O -0.50 -4.76 13.50 -19.64 -0.27 -5.02 16 15 C -0.13 -1.22 9.98 -39.46 -0.39 -1.62 16 16 C -0.13 -1.27 9.96 -39.41 -0.39 -1.66 16 17 C 0.03 0.55 4.43 -3.70 -0.02 0.53 16 18 C 0.20 4.80 3.14 -67.50 -0.21 4.59 16 19 H 0.03 0.84 8.14 -51.92 -0.42 0.42 16 20 C -0.14 -3.37 8.12 37.15 0.30 -3.06 16 21 N -0.58 -14.68 2.80 -157.01 -0.44 -15.12 16 22 C -0.25 -6.96 6.76 -15.06 -0.10 -7.06 16 23 H 0.05 1.36 7.33 -52.48 -0.38 0.97 16 24 C 0.03 0.92 3.36 -17.43 -0.06 0.86 16 25 N -0.88 -25.14 11.84 55.49 0.66 -24.48 16 26 Si 0.88 21.47 29.59 -169.99 -5.03 16.44 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 30 H 0.07 1.55 7.49 -51.93 -0.39 1.16 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 1.01 7.81 -51.93 -0.41 0.60 16 33 H 0.06 1.32 5.74 -51.93 -0.30 1.02 16 34 H 0.05 0.88 8.06 -51.92 -0.42 0.46 16 35 H 0.10 1.04 8.08 -51.93 -0.42 0.62 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.41 2.59 8.82 -40.82 -0.36 2.23 16 38 H 0.14 2.23 6.26 -52.48 -0.33 1.90 16 39 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 40 H 0.39 1.68 9.06 45.56 0.41 2.10 16 41 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 43 H 0.05 0.90 8.11 -51.93 -0.42 0.48 16 44 H 0.06 1.28 5.72 -51.93 -0.30 0.98 16 45 H 0.04 0.99 8.00 -51.93 -0.42 0.57 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.09 2.45 4.54 -51.93 -0.24 2.21 16 48 H 0.25 7.03 8.32 -40.82 -0.34 6.69 16 LS Contribution 373.28 15.07 5.63 5.63 Total: -1.00 -33.66 373.28 -9.53 -43.20 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.48 Total: 6.04 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -2.46 Total: -0.55 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.97 Total: -56.76 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.21 Total: -14.00 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.66 -9.53 -43.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878774936.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.467 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds