Wall clock time and date at job start Tue Mar 31 2020 17:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.62448 * 2 1 4 4 C 1.53231 * 109.79436 * 239.50842 * 2 1 3 5 5 N 1.46900 * 109.34567 * 186.36683 * 4 2 1 6 6 C 1.46896 * 111.00240 * 187.25518 * 5 4 2 7 7 C 1.50699 * 109.47358 * 295.83950 * 6 5 4 8 8 O 1.21296 * 119.99711 * 4.33073 * 7 6 5 9 9 N 1.34774 * 120.00036 * 184.33418 * 7 6 5 10 10 C 1.40117 * 119.99739 * 184.44123 * 9 7 6 11 11 C 1.38851 * 120.01332 * 324.51027 * 10 9 7 12 12 C 1.38088 * 119.98213 * 179.74940 * 11 10 9 13 13 C 1.38717 * 120.01496 * 0.55052 * 12 11 10 14 14 O 1.35968 * 119.98382 * 179.72097 * 13 12 11 15 15 C 1.38722 * 120.02937 * 359.70402 * 13 12 11 16 16 C 1.38082 * 120.01705 * 0.02562 * 15 13 12 17 17 C 1.46899 * 111.26618 * 63.10186 * 5 4 2 18 18 C 1.53238 * 109.34331 * 296.90048 * 17 5 4 19 19 H 1.09008 * 109.78808 * 294.02591 * 18 17 5 20 20 C 1.52995 * 109.62975 * 173.54280 * 18 17 5 21 21 N 1.47077 * 108.52120 * 53.82873 * 18 17 5 22 22 C 1.36937 * 120.87867 * 128.84047 * 21 18 17 23 23 H 1.08003 * 119.99502 * 234.87801 * 22 21 18 24 24 C 1.38808 * 120.00383 * 54.87772 * 22 21 18 25 25 N 1.31618 * 119.99818 * 16.23435 * 24 22 21 26 26 Si 1.86792 * 120.00261 * 196.23712 * 24 22 21 27 27 H 1.48503 * 109.47390 * 59.99532 * 26 24 22 28 28 H 1.48497 * 109.47485 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47238 * 299.99964 * 26 24 22 30 30 H 1.08993 * 109.47300 * 296.31828 * 1 2 3 31 31 H 1.09003 * 109.46951 * 56.31827 * 1 2 3 32 32 H 1.08996 * 109.47159 * 176.31911 * 1 2 3 33 33 H 1.09003 * 109.49412 * 306.32771 * 4 2 1 34 34 H 1.09009 * 109.49181 * 66.40277 * 4 2 1 35 35 H 1.09000 * 109.47104 * 55.83627 * 6 5 4 36 36 H 1.09000 * 109.47201 * 175.83753 * 6 5 4 37 37 H 0.96995 * 120.00233 * 4.43821 * 9 7 6 38 38 H 1.08003 * 120.00442 * 0.02562 * 11 10 9 39 39 H 1.08003 * 119.99000 * 180.30208 * 12 11 10 40 40 H 0.96699 * 114.00356 * 269.97989 * 14 13 12 41 41 H 1.08010 * 119.99121 * 179.97438 * 15 13 12 42 42 H 1.08007 * 120.01337 * 180.02562 * 16 15 13 43 43 H 1.09002 * 109.49069 * 176.93562 * 17 5 4 44 44 H 1.08995 * 109.49121 * 56.86278 * 17 5 4 45 45 H 1.09002 * 109.46800 * 300.97104 * 20 18 17 46 46 H 1.08997 * 109.47320 * 60.96608 * 20 18 17 47 47 H 1.08999 * 109.47413 * 180.97220 * 20 18 17 48 48 H 0.97009 * 120.00058 * 184.93418 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0489 -0.7316 -1.2424 5 7 3.5098 -0.8597 -1.1570 6 6 4.0647 -1.4007 -2.4049 7 6 3.5539 -2.8027 -2.6156 8 8 2.7409 -3.2736 -1.8484 9 7 4.0004 -3.5333 -3.6564 10 6 3.4578 -4.8006 -3.9067 11 6 3.0804 -5.6160 -2.8481 12 6 2.5409 -6.8628 -3.0956 13 6 2.3865 -7.3053 -4.4012 14 8 1.8605 -8.5354 -4.6440 15 6 2.7683 -6.4933 -5.4591 16 6 3.3027 -5.2441 -5.2132 17 6 3.9063 -1.6805 -0.0050 18 6 3.4635 -0.9878 1.2882 19 1 4.0152 -0.0563 1.4154 20 6 3.7279 -1.9087 2.4810 21 7 2.0240 -0.7007 1.1951 22 6 1.1666 -1.0753 2.1949 23 1 0.3047 -1.6849 1.9669 24 6 1.4051 -0.6717 3.5015 25 7 2.2452 0.3122 3.7432 26 14 0.5340 -1.5249 4.9164 27 1 0.8859 -2.9676 4.9167 28 1 0.9584 -0.9121 6.2008 29 1 -0.9347 -1.3738 4.7568 30 1 -0.3633 0.4556 0.9211 31 1 -0.3633 0.5699 -0.8552 32 1 -0.3633 -1.0255 -0.0660 33 1 1.5993 -1.7232 -1.2949 34 1 1.7850 -0.1645 -2.1352 35 1 3.7579 -0.7727 -3.2413 36 1 5.1528 -1.4160 -2.3420 37 1 4.6973 -3.1817 -4.2322 38 1 3.2046 -5.2732 -1.8314 39 1 2.2427 -7.4951 -2.2723 40 1 2.5186 -9.2423 -4.6914 41 1 2.6482 -6.8387 -6.4755 42 1 3.5996 -4.6118 -6.0370 43 1 4.9895 -1.8016 -0.0003 44 1 3.4309 -2.6588 -0.0748 45 1 3.1806 -2.8419 2.3478 46 1 4.7952 -2.1198 2.5475 47 1 3.3962 -1.4206 3.3974 48 1 2.4668 0.5471 4.6580 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878774936.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:08 Heat of formation + Delta-G solvation = -28.730096 kcal Electronic energy + Delta-G solvation = -29779.110931 eV Core-core repulsion = 25834.555940 eV Total energy + Delta-G solvation = -3944.554991 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.85069 -40.50494 -39.38217 -37.79228 -36.18233 -35.28589 -34.41521 -33.28324 -32.00461 -30.49779 -29.41110 -28.21769 -27.39607 -26.33790 -24.24802 -23.87279 -22.82432 -21.99500 -21.40511 -20.88860 -19.38329 -18.84460 -18.31493 -17.79865 -17.07571 -16.77545 -16.43582 -16.28450 -16.17715 -16.11860 -15.62112 -15.38452 -15.19095 -14.95959 -14.66501 -14.41551 -13.91412 -13.73845 -13.64179 -13.44864 -13.30277 -13.17833 -13.01386 -12.82806 -12.69686 -12.61284 -12.34504 -12.31337 -12.02700 -11.89161 -11.65616 -11.53531 -11.52034 -11.34432 -11.15904 -10.99431 -10.10703 -10.01586 -9.11564 -8.98881 -8.31325 -7.62676 -5.60313 0.13367 0.33451 1.42354 1.44066 1.50696 1.54799 2.07183 2.48637 2.67337 2.99304 3.25809 3.32112 3.61992 3.76170 3.96572 3.98594 4.19134 4.28884 4.33557 4.38183 4.50533 4.52452 4.61874 4.66982 4.67580 4.71609 4.75461 4.88821 4.94874 4.98064 5.01403 5.03319 5.08506 5.12103 5.24728 5.30768 5.42398 5.46038 5.51875 5.53451 5.69696 5.79620 5.84189 5.91793 6.14940 6.15474 6.48855 6.60580 6.86387 7.19578 7.28722 7.85486 8.59878 9.16197 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.003158 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.805355 B = 8863.731964 C = 9694.930805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.165 3.835 3 H 0.009 0.991 4 C 0.049 3.951 5 N -0.516 5.516 6 C 0.039 3.961 7 C 0.474 3.526 8 O -0.549 6.549 9 N -0.660 5.660 10 C 0.126 3.874 11 C -0.126 4.126 12 C -0.144 4.144 13 C 0.082 3.918 14 O -0.510 6.510 15 C -0.126 4.126 16 C -0.120 4.120 17 C 0.046 3.954 18 C 0.198 3.802 19 H 0.003 0.997 20 C -0.135 4.135 21 N -0.593 5.593 22 C -0.259 4.259 23 H 0.033 0.967 24 C -0.001 4.001 25 N -0.906 5.906 26 Si 0.935 3.065 27 H -0.279 1.279 28 H -0.287 1.287 29 H -0.276 1.276 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.036 0.964 33 H 0.040 0.960 34 H 0.081 0.919 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.430 0.570 38 H 0.112 0.888 39 H 0.126 0.874 40 H 0.409 0.591 41 H 0.158 0.842 42 H 0.165 0.835 43 H 0.074 0.926 44 H 0.039 0.961 45 H 0.028 0.972 46 H 0.047 0.953 47 H 0.067 0.933 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.299 -10.594 -22.323 26.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.059 3.941 3 H 0.027 0.973 4 C -0.080 4.080 5 N -0.237 5.237 6 C -0.092 4.092 7 C 0.262 3.738 8 O -0.425 6.425 9 N -0.308 5.308 10 C 0.031 3.969 11 C -0.146 4.146 12 C -0.163 4.163 13 C 0.037 3.963 14 O -0.323 6.323 15 C -0.145 4.145 16 C -0.140 4.140 17 C -0.083 4.083 18 C 0.092 3.908 19 H 0.021 0.979 20 C -0.193 4.193 21 N -0.319 5.319 22 C -0.390 4.390 23 H 0.050 0.950 24 C -0.200 4.200 25 N -0.547 5.547 26 Si 0.762 3.238 27 H -0.205 1.205 28 H -0.213 1.213 29 H -0.201 1.201 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.269 0.731 38 H 0.130 0.870 39 H 0.144 0.856 40 H 0.268 0.732 41 H 0.175 0.825 42 H 0.182 0.818 43 H 0.092 0.908 44 H 0.057 0.943 45 H 0.047 0.953 46 H 0.066 0.934 47 H 0.086 0.914 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.399 -9.917 -21.519 24.823 hybrid contribution -0.144 -1.306 1.209 1.786 sum 7.255 -11.223 -20.310 24.312 Atomic orbital electron populations 1.21566 0.95124 1.00297 1.00623 1.20675 0.93355 0.92986 0.87080 0.97312 1.22638 0.87393 0.99738 0.98252 1.62278 1.11478 1.47899 1.02040 1.22676 1.03122 0.88474 0.94951 1.23089 0.80925 0.89984 0.79790 1.90748 1.34425 1.72878 1.44486 1.43698 1.40592 1.15031 1.31499 1.17999 0.99325 0.85781 0.93752 1.21124 1.00738 0.93432 0.99335 1.21437 1.00614 0.96875 0.97385 1.18553 0.98128 0.87818 0.91762 1.84805 1.37853 1.15837 1.93801 1.21499 0.98610 0.94423 0.99963 1.21106 1.00971 0.97150 0.94731 1.22709 0.98956 0.95513 0.91160 1.20209 0.84892 0.93710 0.91975 0.97877 1.21863 0.98199 0.98423 1.00836 1.44200 1.02914 1.66056 1.18696 1.18642 1.07350 1.25358 0.87658 0.94981 1.26041 0.98270 0.95039 1.00690 1.70231 1.38141 1.27015 1.19359 0.85897 0.79266 0.78898 0.79720 1.20452 1.21282 1.20106 0.94156 0.91125 0.94482 0.94167 0.90039 0.84543 0.84779 0.73056 0.86999 0.85573 0.73230 0.82469 0.81799 0.90776 0.94262 0.95314 0.93364 0.91445 0.93928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 8.22 71.98 0.59 -4.44 16 2 C 0.16 7.56 3.65 44.96 0.16 7.72 16 3 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 4 C 0.05 1.84 4.50 86.38 0.39 2.23 16 5 N -0.52 -17.47 4.83 -899.84 -4.35 -21.82 16 6 C 0.04 0.84 5.84 85.56 0.50 1.34 16 7 C 0.47 12.02 7.08 87.66 0.62 12.65 16 8 O -0.55 -20.07 9.12 -3.08 -0.03 -20.09 16 9 N -0.66 -11.64 5.34 -303.39 -1.62 -13.26 16 10 C 0.13 2.69 6.29 38.11 0.24 2.93 16 11 C -0.13 -3.43 8.69 22.38 0.19 -3.23 16 12 C -0.14 -3.52 9.98 22.35 0.22 -3.30 16 13 C 0.08 1.66 6.70 22.50 0.15 1.81 16 14 O -0.51 -8.81 13.50 -93.19 -1.26 -10.07 16 15 C -0.13 -2.00 9.98 22.35 0.22 -1.77 16 16 C -0.12 -1.82 9.96 22.38 0.22 -1.60 16 17 C 0.05 1.81 4.43 86.38 0.38 2.19 16 18 C 0.20 9.66 3.14 44.96 0.14 9.80 16 19 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 20 C -0.13 -6.55 8.12 71.98 0.58 -5.97 16 21 N -0.59 -31.26 2.80 -650.66 -1.82 -33.08 16 22 C -0.26 -14.75 6.76 84.03 0.57 -14.19 16 23 H 0.03 1.92 7.33 -2.91 -0.02 1.90 16 24 C 0.00 -0.08 3.36 84.86 0.28 0.20 16 25 N -0.91 -53.62 11.84 21.65 0.26 -53.36 16 26 Si 0.94 45.40 29.59 68.60 2.03 47.43 16 27 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 28 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 29 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 30 H 0.04 1.89 7.49 -2.39 -0.02 1.87 16 31 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.04 1.61 7.81 -2.39 -0.02 1.59 16 33 H 0.04 1.73 5.74 -2.39 -0.01 1.72 16 34 H 0.08 2.56 8.06 -2.38 -0.02 2.54 16 35 H 0.14 2.08 8.08 -2.39 -0.02 2.06 16 36 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.43 3.62 8.82 -92.71 -0.82 2.80 16 38 H 0.11 3.75 6.26 -2.91 -0.02 3.73 16 39 H 0.13 3.00 8.06 -2.91 -0.02 2.97 16 40 H 0.41 2.74 9.06 -74.06 -0.67 2.07 16 41 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 42 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 43 H 0.07 2.53 8.11 -2.39 -0.02 2.51 16 44 H 0.04 1.74 5.72 -2.39 -0.01 1.73 16 45 H 0.03 1.41 8.00 -2.39 -0.02 1.39 16 46 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.07 3.65 4.54 -2.39 -0.01 3.64 16 48 H 0.25 14.38 8.32 -92.70 -0.77 13.61 16 Total: -1.00 -78.15 373.28 -1.80 -79.95 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -0.50 Total: 17.93 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 5.48 Total: 6.37 kcal Atomic # 7 Polarization: -113.99 SS G_CDS: -7.53 Total: -121.52 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -1.29 Total: -30.16 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -78.15 -1.80 -79.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878774936.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.222 kcal (2) G-P(sol) polarization free energy of solvation -78.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds