Wall clock time and date at job start Tue Mar 31 2020 17:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.78512 * 2 1 4 4 C 1.53233 * 109.62733 * 120.48277 * 2 1 3 5 5 N 1.46896 * 109.33853 * 173.54003 * 4 2 1 6 6 C 1.46904 * 111.00128 * 172.74888 * 5 4 2 7 7 C 1.50706 * 109.46974 * 294.30402 * 6 5 4 8 8 O 1.21292 * 119.99705 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00194 * 180.02562 * 7 6 5 10 10 C 1.40106 * 120.00005 * 184.74925 * 9 7 6 11 11 C 1.38840 * 120.01715 * 325.26321 * 10 9 7 12 12 C 1.38093 * 119.98902 * 179.74670 * 11 10 9 13 13 C 1.38723 * 120.00772 * 0.56031 * 12 11 10 14 14 O 1.35973 * 119.98168 * 179.72199 * 13 12 11 15 15 C 1.38722 * 120.03647 * 359.69613 * 13 12 11 16 16 C 1.38093 * 120.00916 * 0.02765 * 15 13 12 17 17 C 1.46897 * 111.27126 * 296.89822 * 5 4 2 18 18 C 1.53238 * 109.34293 * 63.10452 * 17 5 4 19 19 H 1.08994 * 109.62972 * 186.45921 * 18 17 5 20 20 C 1.53003 * 109.78774 * 65.97326 * 18 17 5 21 21 N 1.47072 * 109.62958 * 239.51566 * 2 1 3 22 22 C 1.36939 * 120.88417 * 9.37975 * 21 2 1 23 23 H 1.08004 * 119.99883 * 230.51339 * 22 21 2 24 24 C 1.38813 * 120.00248 * 50.50867 * 22 21 2 25 25 N 1.31617 * 119.99861 * 207.57747 * 24 22 21 26 26 Si 1.86802 * 119.99674 * 27.57471 * 24 22 21 27 27 H 1.48504 * 109.46903 * 89.69365 * 26 24 22 28 28 H 1.48503 * 109.46866 * 209.69658 * 26 24 22 29 29 H 1.48501 * 109.47067 * 329.69388 * 26 24 22 30 30 H 1.08996 * 109.47329 * 172.53629 * 1 2 3 31 31 H 1.09002 * 109.47488 * 292.54517 * 1 2 3 32 32 H 1.09005 * 109.47155 * 52.54005 * 1 2 3 33 33 H 1.08997 * 109.49469 * 53.58501 * 4 2 1 34 34 H 1.09003 * 109.49664 * 293.50017 * 4 2 1 35 35 H 1.09002 * 109.47107 * 54.29716 * 6 5 4 36 36 H 1.08997 * 109.47317 * 174.30669 * 6 5 4 37 37 H 0.97010 * 119.99728 * 4.74152 * 9 7 6 38 38 H 1.08007 * 120.00410 * 0.02562 * 11 10 9 39 39 H 1.08001 * 119.99573 * 180.30261 * 12 11 10 40 40 H 0.96696 * 113.99714 * 269.97620 * 14 13 12 41 41 H 1.07993 * 119.99667 * 180.02562 * 15 13 12 42 42 H 1.08003 * 120.00203 * 180.02562 * 16 15 13 43 43 H 1.09000 * 109.49313 * 303.14404 * 17 5 4 44 44 H 1.09004 * 109.49494 * 183.06892 * 17 5 4 45 45 H 1.08996 * 109.47197 * 300.87473 * 20 18 17 46 46 H 1.08999 * 109.46542 * 60.87592 * 20 18 17 47 47 H 1.08997 * 109.46621 * 180.87404 * 20 18 17 48 48 H 0.97010 * 119.99230 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0447 -0.7322 1.2438 5 7 3.5054 -0.8643 1.1609 6 6 4.0568 -1.4061 2.4101 7 6 3.8417 -0.4155 3.5253 8 8 3.2844 0.6382 3.3014 9 7 4.2695 -0.7001 4.7713 10 6 3.9824 0.1746 5.8274 11 6 3.9434 1.5443 5.6038 12 6 3.6552 2.4055 6.6441 13 6 3.4161 1.9031 7.9148 14 8 3.1379 2.7520 8.9399 15 6 3.4601 0.5350 8.1402 16 6 3.7426 -0.3277 7.0995 17 6 3.9016 -1.6870 0.0102 18 6 3.4630 -0.9939 -1.2843 19 1 3.6510 -1.6511 -2.1333 20 6 4.2412 0.3113 -1.4624 21 7 2.0241 -0.7027 -1.1938 22 6 1.1681 -1.0712 -2.1971 23 1 1.1749 -2.0857 -2.5674 24 6 0.2915 -0.1407 -2.7383 25 7 -0.8481 -0.5380 -3.2634 26 14 0.7294 1.6752 -2.7211 27 1 1.4746 2.0164 -3.9595 28 1 -0.5144 2.4836 -2.6530 29 1 1.5762 1.9689 -1.5370 30 1 -0.3634 -1.0189 -0.1335 31 1 -0.3634 0.3940 0.9491 32 1 -0.3634 0.6251 -0.8158 33 1 1.5924 -1.7225 1.2962 34 1 1.7810 -0.1637 2.1357 35 1 3.5538 -2.3420 2.6535 36 1 5.1243 -1.5885 2.2870 37 1 4.7762 -1.5107 4.9368 38 1 4.1341 1.9358 4.6155 39 1 3.6201 3.4707 6.4692 40 1 3.9192 3.0558 9.4220 41 1 3.2734 0.1445 9.1296 42 1 3.7764 -1.3928 7.2750 43 1 3.4233 -2.6640 0.0797 44 1 4.9845 -1.8111 0.0074 45 1 4.0569 0.9636 -0.6088 46 1 5.3070 0.0925 -1.5290 47 1 3.9143 0.8073 -2.3762 48 1 -1.4608 0.1124 -3.6413 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878774938.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:15 Heat of formation + Delta-G solvation = 0.562003 kcal Electronic energy + Delta-G solvation = -29481.815450 eV Core-core repulsion = 25538.530660 eV Total energy + Delta-G solvation = -3943.284791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.79532 -39.47093 -38.39046 -36.92976 -34.78093 -34.41778 -32.62926 -31.61530 -31.24785 -29.58328 -28.30083 -27.04510 -26.07204 -24.24252 -23.33614 -22.75149 -21.93380 -20.96977 -20.43514 -18.67491 -18.49551 -17.96059 -17.15141 -16.64369 -15.93235 -15.70808 -15.47308 -15.15718 -14.71670 -14.52341 -14.37539 -14.28242 -13.97336 -13.64867 -13.33903 -13.05731 -12.87294 -12.70512 -12.63849 -12.28440 -12.16546 -12.11681 -11.99480 -11.37721 -11.15130 -11.04637 -10.78950 -10.69940 -10.55457 -10.38625 -10.35128 -10.02427 -9.81760 -9.78331 -9.59517 -9.29452 -9.20463 -8.25897 -8.22655 -7.93216 -6.43638 -6.01961 -3.48334 0.90543 1.10189 2.48978 2.76628 3.41278 3.45016 3.54752 3.65031 3.97976 4.22593 4.53005 4.60176 4.69593 4.70031 5.02314 5.06053 5.14592 5.21969 5.27161 5.30267 5.33715 5.66289 5.72054 5.77116 5.82696 5.95762 5.98715 6.07663 6.13654 6.17619 6.22970 6.30460 6.36915 6.48238 6.50215 6.59956 6.65542 6.67263 6.83395 6.91709 7.08744 7.12255 7.25345 7.38642 7.41740 7.44784 7.59558 8.05381 8.13881 8.55183 9.10988 9.75327 10.33695 11.12432 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018456 B = 0.002881 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.720109 B = 9717.144417 C =10371.680935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.173 3.827 3 H 0.042 0.958 4 C 0.045 3.955 5 N -0.515 5.515 6 C 0.038 3.962 7 C 0.512 3.488 8 O -0.490 6.490 9 N -0.681 5.681 10 C 0.144 3.856 11 C -0.105 4.105 12 C -0.125 4.125 13 C 0.083 3.917 14 O -0.499 6.499 15 C -0.127 4.127 16 C -0.133 4.133 17 C 0.051 3.949 18 C 0.167 3.833 19 H 0.072 0.928 20 C -0.155 4.155 21 N -0.594 5.594 22 C -0.279 4.279 23 H 0.067 0.933 24 C 0.063 3.937 25 N -0.888 5.888 26 Si 0.852 3.148 27 H -0.292 1.292 28 H -0.298 1.298 29 H -0.251 1.251 30 H 0.067 0.933 31 H 0.032 0.968 32 H 0.060 0.940 33 H 0.027 0.973 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.102 0.898 37 H 0.409 0.591 38 H 0.147 0.853 39 H 0.131 0.869 40 H 0.387 0.613 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.032 0.968 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.036 0.964 47 H 0.044 0.956 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.258 -1.075 22.022 26.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.067 3.933 3 H 0.059 0.941 4 C -0.084 4.084 5 N -0.240 5.240 6 C -0.094 4.094 7 C 0.300 3.700 8 O -0.362 6.362 9 N -0.328 5.328 10 C 0.050 3.950 11 C -0.125 4.125 12 C -0.144 4.144 13 C 0.038 3.962 14 O -0.309 6.309 15 C -0.146 4.146 16 C -0.154 4.154 17 C -0.078 4.078 18 C 0.060 3.940 19 H 0.090 0.910 20 C -0.214 4.214 21 N -0.318 5.318 22 C -0.408 4.408 23 H 0.085 0.915 24 C -0.140 4.140 25 N -0.527 5.527 26 Si 0.680 3.320 27 H -0.219 1.219 28 H -0.226 1.226 29 H -0.175 1.175 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.120 0.880 37 H 0.245 0.755 38 H 0.164 0.836 39 H 0.149 0.851 40 H 0.242 0.758 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.051 0.949 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.243 0.054 21.401 25.167 hybrid contribution 0.519 -0.078 0.303 0.606 sum 13.762 -0.023 21.704 25.699 Atomic orbital electron populations 1.21852 0.95130 1.03181 0.98963 1.20769 0.93022 0.94561 0.84907 0.94079 1.22845 0.85202 0.99368 1.01005 1.61653 1.12671 1.49631 1.00026 1.21942 1.02250 0.94702 0.90476 1.21011 0.77747 0.88571 0.82689 1.90715 1.39220 1.24533 1.81712 1.43658 1.56592 1.25408 1.07158 1.17802 0.99805 0.89874 0.87538 1.21306 0.99570 0.91303 1.00356 1.21382 1.00114 1.00677 0.92205 1.18462 1.01239 0.88777 0.87755 1.84872 1.35946 1.64351 1.45738 1.21163 1.01298 0.92568 0.99588 1.20770 1.02941 0.99928 0.91729 1.22639 0.98779 0.94520 0.91830 1.20745 0.85570 0.94324 0.93337 0.91038 1.22156 0.97719 1.00090 1.01463 1.44461 1.01240 1.68699 1.17445 1.18439 1.14531 0.94580 1.13209 0.91550 1.25785 0.95614 0.97725 0.94914 1.69978 1.07450 1.34833 1.40393 0.87382 0.77998 0.87501 0.79107 1.21940 1.22553 1.17550 0.91360 0.94866 0.92159 0.95491 0.90362 0.92074 0.87997 0.75517 0.83561 0.85099 0.75821 0.85188 0.85303 0.94924 0.91701 0.92303 0.94470 0.93664 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 7.82 37.16 0.29 -2.80 16 2 C 0.17 3.90 2.07 -67.50 -0.14 3.76 16 3 H 0.04 1.02 5.96 -51.93 -0.31 0.71 16 4 C 0.04 0.85 4.55 -3.71 -0.02 0.84 16 5 N -0.52 -8.48 3.87 -235.76 -0.91 -9.39 16 6 C 0.04 0.45 5.45 -4.97 -0.03 0.42 16 7 C 0.51 6.54 7.34 -10.98 -0.08 6.46 16 8 O -0.49 -8.33 11.74 5.55 0.07 -8.26 16 9 N -0.68 -6.37 5.34 -9.83 -0.05 -6.42 16 10 C 0.14 1.53 6.31 -83.63 -0.53 1.00 16 11 C -0.11 -1.27 8.70 -39.41 -0.34 -1.61 16 12 C -0.12 -1.35 9.98 -39.46 -0.39 -1.74 16 13 C 0.08 0.82 6.70 -39.22 -0.26 0.56 16 14 O -0.50 -4.36 13.50 -19.65 -0.27 -4.62 16 15 C -0.13 -1.12 9.98 -39.46 -0.39 -1.51 16 16 C -0.13 -1.16 9.96 -39.41 -0.39 -1.55 16 17 C 0.05 0.83 5.01 -3.70 -0.02 0.81 16 18 C 0.17 3.33 3.31 -67.49 -0.22 3.10 16 19 H 0.07 1.43 7.95 -51.93 -0.41 1.02 16 20 C -0.16 -2.96 9.22 37.16 0.34 -2.62 16 21 N -0.59 -14.04 2.00 -157.01 -0.31 -14.35 16 22 C -0.28 -7.66 8.72 -15.06 -0.13 -7.79 16 23 H 0.07 1.98 8.06 -52.48 -0.42 1.56 16 24 C 0.06 1.77 3.67 -17.43 -0.06 1.71 16 25 N -0.89 -26.49 13.97 55.49 0.78 -25.72 16 26 Si 0.85 22.23 25.52 -169.99 -4.34 17.89 16 27 H -0.29 -7.73 7.11 56.52 0.40 -7.32 16 28 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 29 H -0.25 -6.43 5.14 56.52 0.29 -6.14 16 30 H 0.07 1.67 7.69 -51.93 -0.40 1.27 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 1.52 3.79 -51.93 -0.20 1.32 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 1.52 5.77 -51.93 -0.30 1.22 16 35 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 36 H 0.10 0.92 7.97 -51.93 -0.41 0.50 16 37 H 0.41 2.28 8.82 -40.82 -0.36 1.92 16 38 H 0.15 2.02 6.19 -52.48 -0.32 1.69 16 39 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.39 1.38 9.06 45.56 0.41 1.79 16 41 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 42 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.87 7.99 -51.93 -0.41 0.45 16 45 H 0.06 1.20 7.10 -51.93 -0.37 0.83 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -34.26 371.76 -8.38 -42.64 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -6.56 Total: 3.58 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -2.38 Total: -0.96 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.50 Total: -55.88 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.20 Total: -12.88 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.34 Total: 17.89 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.26 -8.38 -42.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878774938.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.205 kcal (2) G-P(sol) polarization free energy of solvation -34.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds