Wall clock time and date at job start Tue Mar 31 2020 17:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.78512 * 2 1 4 4 C 1.53233 * 109.62733 * 120.48277 * 2 1 3 5 5 N 1.46896 * 109.33853 * 173.54003 * 4 2 1 6 6 C 1.46904 * 111.00128 * 172.74888 * 5 4 2 7 7 C 1.50706 * 109.46974 * 294.30402 * 6 5 4 8 8 O 1.21292 * 119.99705 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00194 * 180.02562 * 7 6 5 10 10 C 1.40106 * 120.00005 * 184.74925 * 9 7 6 11 11 C 1.38840 * 120.01715 * 325.26321 * 10 9 7 12 12 C 1.38093 * 119.98902 * 179.74670 * 11 10 9 13 13 C 1.38723 * 120.00772 * 0.56031 * 12 11 10 14 14 O 1.35973 * 119.98168 * 179.72199 * 13 12 11 15 15 C 1.38722 * 120.03647 * 359.69613 * 13 12 11 16 16 C 1.38093 * 120.00916 * 0.02765 * 15 13 12 17 17 C 1.46897 * 111.27126 * 296.89822 * 5 4 2 18 18 C 1.53238 * 109.34293 * 63.10452 * 17 5 4 19 19 H 1.08994 * 109.62972 * 186.45921 * 18 17 5 20 20 C 1.53003 * 109.78774 * 65.97326 * 18 17 5 21 21 N 1.47072 * 109.62958 * 239.51566 * 2 1 3 22 22 C 1.36939 * 120.88417 * 9.37975 * 21 2 1 23 23 H 1.08004 * 119.99883 * 230.51339 * 22 21 2 24 24 C 1.38813 * 120.00248 * 50.50867 * 22 21 2 25 25 N 1.31617 * 119.99861 * 207.57747 * 24 22 21 26 26 Si 1.86802 * 119.99674 * 27.57471 * 24 22 21 27 27 H 1.48504 * 109.46903 * 89.69365 * 26 24 22 28 28 H 1.48503 * 109.46866 * 209.69658 * 26 24 22 29 29 H 1.48501 * 109.47067 * 329.69388 * 26 24 22 30 30 H 1.08996 * 109.47329 * 172.53629 * 1 2 3 31 31 H 1.09002 * 109.47488 * 292.54517 * 1 2 3 32 32 H 1.09005 * 109.47155 * 52.54005 * 1 2 3 33 33 H 1.08997 * 109.49469 * 53.58501 * 4 2 1 34 34 H 1.09003 * 109.49664 * 293.50017 * 4 2 1 35 35 H 1.09002 * 109.47107 * 54.29716 * 6 5 4 36 36 H 1.08997 * 109.47317 * 174.30669 * 6 5 4 37 37 H 0.97010 * 119.99728 * 4.74152 * 9 7 6 38 38 H 1.08007 * 120.00410 * 0.02562 * 11 10 9 39 39 H 1.08001 * 119.99573 * 180.30261 * 12 11 10 40 40 H 0.96696 * 113.99714 * 269.97620 * 14 13 12 41 41 H 1.07993 * 119.99667 * 180.02562 * 15 13 12 42 42 H 1.08003 * 120.00203 * 180.02562 * 16 15 13 43 43 H 1.09000 * 109.49313 * 303.14404 * 17 5 4 44 44 H 1.09004 * 109.49494 * 183.06892 * 17 5 4 45 45 H 1.08996 * 109.47197 * 300.87473 * 20 18 17 46 46 H 1.08999 * 109.46542 * 60.87592 * 20 18 17 47 47 H 1.08997 * 109.46621 * 180.87404 * 20 18 17 48 48 H 0.97010 * 119.99230 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0447 -0.7322 1.2438 5 7 3.5054 -0.8643 1.1609 6 6 4.0568 -1.4061 2.4101 7 6 3.8417 -0.4155 3.5253 8 8 3.2844 0.6382 3.3014 9 7 4.2695 -0.7001 4.7713 10 6 3.9824 0.1746 5.8274 11 6 3.9434 1.5443 5.6038 12 6 3.6552 2.4055 6.6441 13 6 3.4161 1.9031 7.9148 14 8 3.1379 2.7520 8.9399 15 6 3.4601 0.5350 8.1402 16 6 3.7426 -0.3277 7.0995 17 6 3.9016 -1.6870 0.0102 18 6 3.4630 -0.9939 -1.2843 19 1 3.6510 -1.6511 -2.1333 20 6 4.2412 0.3113 -1.4624 21 7 2.0241 -0.7027 -1.1938 22 6 1.1681 -1.0712 -2.1971 23 1 1.1749 -2.0857 -2.5674 24 6 0.2915 -0.1407 -2.7383 25 7 -0.8481 -0.5380 -3.2634 26 14 0.7294 1.6752 -2.7211 27 1 1.4746 2.0164 -3.9595 28 1 -0.5144 2.4836 -2.6530 29 1 1.5762 1.9689 -1.5370 30 1 -0.3634 -1.0189 -0.1335 31 1 -0.3634 0.3940 0.9491 32 1 -0.3634 0.6251 -0.8158 33 1 1.5924 -1.7225 1.2962 34 1 1.7810 -0.1637 2.1357 35 1 3.5538 -2.3420 2.6535 36 1 5.1243 -1.5885 2.2870 37 1 4.7762 -1.5107 4.9368 38 1 4.1341 1.9358 4.6155 39 1 3.6201 3.4707 6.4692 40 1 3.9192 3.0558 9.4220 41 1 3.2734 0.1445 9.1296 42 1 3.7764 -1.3928 7.2750 43 1 3.4233 -2.6640 0.0797 44 1 4.9845 -1.8111 0.0074 45 1 4.0569 0.9636 -0.6088 46 1 5.3070 0.0925 -1.5290 47 1 3.9143 0.8073 -2.3762 48 1 -1.4608 0.1124 -3.6413 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878774938.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:14 Heat of formation + Delta-G solvation = -25.864473 kcal Electronic energy + Delta-G solvation = -29482.961388 eV Core-core repulsion = 25538.530660 eV Total energy + Delta-G solvation = -3944.430729 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.67695 -40.45969 -39.67956 -37.75858 -36.34431 -35.26294 -34.28298 -33.59829 -31.97668 -30.75243 -29.79125 -28.21046 -27.62862 -25.95160 -24.23533 -23.92133 -23.08730 -22.59267 -21.34752 -20.26084 -19.35576 -18.77523 -18.57196 -18.04304 -17.22286 -16.78363 -16.43972 -16.31504 -16.23267 -15.93600 -15.70533 -15.34431 -15.14848 -15.01719 -14.55692 -14.37186 -14.26763 -13.99728 -13.82347 -13.69713 -13.62668 -13.28698 -13.02225 -12.98824 -12.89238 -12.46828 -12.40292 -12.31450 -12.24917 -11.79913 -11.66537 -11.55760 -11.50600 -11.23278 -11.17856 -10.65332 -10.38097 -9.97213 -9.23070 -8.98155 -8.37945 -8.23892 -5.65728 0.16135 0.36406 1.31962 1.38582 1.52051 1.59368 1.94943 2.43284 2.69940 2.97283 3.03989 3.35074 3.43358 3.70817 3.97227 4.01442 4.15151 4.23285 4.28173 4.36269 4.37502 4.51129 4.53639 4.55187 4.60167 4.63405 4.65450 4.78533 4.85740 4.87892 4.91199 5.02267 5.06881 5.14439 5.17770 5.32635 5.33570 5.35613 5.45095 5.48632 5.52220 5.63569 5.92877 5.96548 6.10020 6.17954 6.32376 6.51723 6.88924 7.12174 7.21445 7.66377 8.26897 8.94635 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018456 B = 0.002881 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.720109 B = 9717.144417 C =10371.680935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.172 3.828 3 H 0.021 0.979 4 C 0.063 3.937 5 N -0.530 5.530 6 C 0.041 3.959 7 C 0.511 3.489 8 O -0.541 6.541 9 N -0.661 5.661 10 C 0.128 3.872 11 C -0.125 4.125 12 C -0.142 4.142 13 C 0.081 3.919 14 O -0.511 6.511 15 C -0.128 4.128 16 C -0.122 4.122 17 C 0.062 3.938 18 C 0.155 3.845 19 H 0.067 0.933 20 C -0.144 4.144 21 N -0.604 5.604 22 C -0.263 4.263 23 H 0.035 0.965 24 C 0.027 3.973 25 N -0.928 5.928 26 Si 0.901 3.099 27 H -0.296 1.296 28 H -0.303 1.303 29 H -0.247 1.247 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.035 0.965 33 H 0.022 0.978 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.142 0.858 37 H 0.430 0.570 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.409 0.591 41 H 0.155 0.845 42 H 0.161 0.839 43 H 0.031 0.969 44 H 0.107 0.893 45 H 0.044 0.956 46 H 0.075 0.925 47 H 0.019 0.981 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.836 -2.418 24.980 30.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.067 3.933 3 H 0.039 0.961 4 C -0.066 4.066 5 N -0.254 5.254 6 C -0.090 4.090 7 C 0.299 3.701 8 O -0.416 6.416 9 N -0.309 5.309 10 C 0.033 3.967 11 C -0.145 4.145 12 C -0.161 4.161 13 C 0.036 3.964 14 O -0.324 6.324 15 C -0.147 4.147 16 C -0.142 4.142 17 C -0.066 4.066 18 C 0.049 3.951 19 H 0.085 0.915 20 C -0.203 4.203 21 N -0.330 5.330 22 C -0.393 4.393 23 H 0.052 0.948 24 C -0.173 4.173 25 N -0.570 5.570 26 Si 0.729 3.271 27 H -0.224 1.224 28 H -0.231 1.231 29 H -0.171 1.171 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.040 0.960 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.159 0.841 37 H 0.269 0.731 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.268 0.732 41 H 0.172 0.828 42 H 0.179 0.821 43 H 0.049 0.951 44 H 0.125 0.875 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.039 0.961 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.902 -1.313 24.420 29.171 hybrid contribution -0.221 0.314 -0.485 0.619 sum 15.682 -0.999 23.935 28.632 Atomic orbital electron populations 1.21766 0.96038 1.01435 0.99321 1.20705 0.92394 0.93949 0.86299 0.96128 1.22451 0.87389 0.98268 0.98510 1.61498 1.10644 1.50959 1.02313 1.22068 1.04431 0.94707 0.87763 1.21242 0.77102 0.87994 0.83745 1.90718 1.41742 1.26577 1.82602 1.43398 1.55850 1.25739 1.05906 1.17939 1.00682 0.89447 0.88590 1.21199 1.01182 0.92622 0.99546 1.21458 1.01078 1.00759 0.92789 1.18580 1.00595 0.89630 0.87564 1.84809 1.37699 1.64345 1.45520 1.21483 1.00389 0.91991 1.00810 1.21083 1.01094 1.01534 0.90474 1.22492 1.01122 0.93394 0.89611 1.20988 0.83227 0.95087 0.95799 0.91513 1.22019 0.99876 0.98907 0.99464 1.44570 1.02782 1.68647 1.16958 1.18280 1.14712 0.93095 1.13185 0.94762 1.26139 0.95610 1.00186 0.95367 1.70055 1.08557 1.35667 1.42675 0.86607 0.77314 0.84345 0.78816 1.22406 1.23073 1.17082 0.93317 0.92381 0.94580 0.95974 0.90588 0.89749 0.84080 0.73079 0.86110 0.85163 0.73238 0.82761 0.82105 0.95110 0.87457 0.93721 0.90621 0.96146 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.02 7.82 71.98 0.56 -5.46 16 2 C 0.17 7.77 2.07 44.96 0.09 7.87 16 3 H 0.02 1.04 5.96 -2.39 -0.01 1.03 16 4 C 0.06 2.34 4.55 86.38 0.39 2.73 16 5 N -0.53 -15.95 3.87 -899.82 -3.49 -19.44 16 6 C 0.04 0.79 5.45 85.56 0.47 1.26 16 7 C 0.51 11.80 7.34 87.66 0.64 12.44 16 8 O -0.54 -18.07 11.74 -3.07 -0.04 -18.11 16 9 N -0.66 -10.36 5.34 -303.40 -1.62 -11.98 16 10 C 0.13 2.45 6.31 38.11 0.24 2.69 16 11 C -0.13 -3.00 8.70 22.38 0.19 -2.81 16 12 C -0.14 -3.05 9.98 22.35 0.22 -2.82 16 13 C 0.08 1.48 6.70 22.50 0.15 1.63 16 14 O -0.51 -7.98 13.50 -93.24 -1.26 -9.24 16 15 C -0.13 -1.86 9.98 22.35 0.22 -1.64 16 16 C -0.12 -1.70 9.96 22.38 0.22 -1.48 16 17 C 0.06 1.81 5.01 86.38 0.43 2.24 16 18 C 0.15 5.93 3.31 44.96 0.15 6.08 16 19 H 0.07 2.60 7.95 -2.39 -0.02 2.58 16 20 C -0.14 -5.24 9.22 71.98 0.66 -4.58 16 21 N -0.60 -28.65 2.00 -650.66 -1.30 -29.95 16 22 C -0.26 -14.80 8.72 84.03 0.73 -14.07 16 23 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 24 C 0.03 1.55 3.67 84.86 0.31 1.86 16 25 N -0.93 -57.29 13.97 21.65 0.30 -56.99 16 26 Si 0.90 47.41 25.52 68.60 1.75 49.16 16 27 H -0.30 -15.64 7.11 99.48 0.71 -14.93 16 28 H -0.30 -16.06 7.11 99.48 0.71 -15.35 16 29 H -0.25 -12.68 5.14 99.48 0.51 -12.17 16 30 H 0.05 2.44 7.69 -2.39 -0.02 2.42 16 31 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.04 1.85 3.79 -2.38 -0.01 1.84 16 33 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 2.89 5.77 -2.39 -0.01 2.88 16 35 H 0.08 1.35 8.12 -2.39 -0.02 1.33 16 36 H 0.14 1.69 7.97 -2.39 -0.02 1.67 16 37 H 0.43 2.93 8.82 -92.70 -0.82 2.11 16 38 H 0.12 3.50 6.19 -2.91 -0.02 3.48 16 39 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 40 H 0.41 2.08 9.06 -74.06 -0.67 1.41 16 41 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 43 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.11 2.27 7.99 -2.39 -0.02 2.25 16 45 H 0.04 1.75 7.10 -2.39 -0.02 1.74 16 46 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 Total: -1.00 -78.62 371.76 -0.64 -79.26 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -0.69 Total: 11.34 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 5.70 Total: 5.94 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -6.10 Total: -118.36 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -1.30 Total: -27.35 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.75 Total: 49.16 kcal Total: -78.62 -0.64 -79.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878774938.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.397 kcal (2) G-P(sol) polarization free energy of solvation -78.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds