Wall clock time and date at job start Tue Mar 31 2020 17:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.61181 * 2 1 4 4 C 1.53380 * 109.60542 * 120.34214 * 2 1 3 5 5 N 1.46965 * 108.63644 * 70.31847 * 4 2 1 6 6 C 1.34775 * 120.59295 * 235.20485 * 5 4 2 7 7 O 1.21282 * 119.99907 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99962 * 180.02562 * 6 5 4 9 9 O 1.42900 * 109.47250 * 179.97438 * 8 6 5 10 10 C 1.42901 * 114.00273 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.47012 * 179.97438 * 10 9 8 12 12 C 1.38222 * 119.62075 * 359.97420 * 11 10 9 13 13 C 1.38624 * 119.16185 * 180.02562 * 12 11 10 14 14 C 1.38670 * 118.41982 * 0.02562 * 13 12 11 15 15 C 1.38175 * 119.16381 * 359.97438 * 14 13 12 16 16 N 1.31857 * 119.61309 * 180.02562 * 11 10 9 17 17 C 1.46965 * 118.81272 * 55.47336 * 5 4 2 18 18 C 1.53814 * 108.40100 * 304.48896 * 17 5 4 19 19 H 1.09007 * 109.87597 * 289.76411 * 18 17 5 20 20 C 1.52995 * 109.53356 * 169.30174 * 18 17 5 21 21 N 1.46965 * 109.60865 * 239.48307 * 2 1 3 22 22 C 1.36934 * 120.59454 * 115.46547 * 21 2 1 23 23 H 1.08002 * 120.00131 * 150.96329 * 22 21 2 24 24 C 1.38812 * 119.99850 * 330.95772 * 22 21 2 25 25 N 1.31619 * 120.00042 * 343.15243 * 24 22 21 26 26 Si 1.86799 * 119.99995 * 163.14264 * 24 22 21 27 27 H 1.48506 * 109.46731 * 60.00757 * 26 24 22 28 28 H 1.48500 * 109.47217 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47531 * 300.00448 * 26 24 22 30 30 H 1.09007 * 109.47017 * 299.66617 * 1 2 3 31 31 H 1.08998 * 109.47073 * 59.65724 * 1 2 3 32 32 H 1.08998 * 109.47696 * 179.65929 * 1 2 3 33 33 H 1.08993 * 109.60939 * 310.57108 * 4 2 1 34 34 H 1.09004 * 109.60436 * 190.06149 * 4 2 1 35 35 H 1.08999 * 109.47465 * 59.99366 * 8 6 5 36 36 H 1.09000 * 109.46936 * 299.99053 * 8 6 5 37 37 H 1.08997 * 109.47003 * 59.99707 * 10 9 8 38 38 H 1.08996 * 109.46643 * 299.99567 * 10 9 8 39 39 H 1.08001 * 120.41765 * 0.04653 * 12 11 10 40 40 H 1.08003 * 120.78820 * 179.97438 * 13 12 11 41 41 H 1.08001 * 120.41518 * 179.97438 * 14 13 12 42 42 H 1.08001 * 119.61495 * 179.97438 * 15 14 13 43 43 H 1.09003 * 109.60738 * 64.26927 * 17 5 4 44 44 H 1.08996 * 109.60935 * 184.77812 * 17 5 4 45 45 H 1.09003 * 109.47381 * 302.53376 * 20 18 17 46 46 H 1.09007 * 109.47113 * 62.53680 * 20 18 17 47 47 H 1.09003 * 109.46999 * 182.53185 * 20 18 17 48 48 H 0.97004 * 120.00121 * 175.69539 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0267 0.0000 4 6 2.0446 -0.7299 1.2470 5 7 1.7604 -2.1645 1.1022 6 6 1.0603 -2.8238 2.0465 7 8 0.6591 -2.2331 3.0269 8 6 0.7770 -4.2950 1.8848 9 8 0.0261 -4.7617 3.0074 10 6 -0.2976 -6.1525 2.9525 11 6 -1.0849 -6.5338 4.1797 12 6 -1.3745 -5.5739 5.1312 13 6 -2.0988 -5.9352 6.2566 14 6 -2.5061 -7.2546 6.3838 15 6 -2.1793 -8.1588 5.3914 16 7 -1.4885 -7.7796 4.3339 17 6 2.2584 -2.8687 -0.0878 18 6 1.7390 -2.1376 -1.3374 19 1 0.6640 -2.2895 -1.4356 20 6 2.4497 -2.6792 -2.5793 21 7 2.0232 -0.7030 -1.1926 22 6 2.7345 -0.0332 -2.1521 23 1 3.4688 -0.5583 -2.7450 24 6 2.5117 1.3206 -2.3627 25 7 1.4183 1.8876 -1.8987 26 14 3.7639 2.3378 -3.3044 27 1 3.9234 1.7834 -4.6728 28 1 3.2947 3.7441 -3.3912 29 1 5.0691 2.2947 -2.5975 30 1 -0.3633 0.5087 0.8930 31 1 -0.3633 0.5191 -0.8869 32 1 -0.3634 -1.0276 -0.0061 33 1 1.5383 -0.3441 2.1317 34 1 3.1198 -0.5777 1.3421 35 1 1.7180 -4.8418 1.8248 36 1 0.2041 -4.4564 0.9716 37 1 0.6209 -6.7381 2.9140 38 1 -0.8933 -6.3519 2.0618 39 1 -1.0410 -4.5551 4.9992 40 1 -2.3394 -5.2065 7.0166 41 1 -3.0716 -7.5714 7.2477 42 1 -2.4924 -9.1883 5.4833 43 1 3.3484 -2.8654 -0.0854 44 1 1.8932 -3.8957 -0.0846 45 1 3.5267 -2.5570 -2.4639 46 1 2.2148 -3.7368 -2.7001 47 1 2.1138 -2.1297 -3.4587 48 1 1.2917 2.8449 -1.9910 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880454870.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:18 Heat of formation + Delta-G solvation = -5.556757 kcal Electronic energy + Delta-G solvation = -29057.852200 eV Core-core repulsion = 25114.302080 eV Total energy + Delta-G solvation = -3943.550120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.43965 -39.82448 -37.98863 -36.97863 -34.07430 -32.90211 -32.75726 -32.11773 -31.37572 -28.68965 -27.91517 -26.70140 -26.18614 -24.90497 -23.69179 -23.56993 -22.22182 -20.96233 -19.82719 -18.55021 -17.62467 -16.99940 -16.71580 -16.51714 -16.06119 -15.69712 -15.54327 -15.18915 -14.98952 -14.80252 -14.18846 -14.07010 -13.95073 -13.55186 -13.43305 -13.28180 -13.00406 -12.84798 -12.16754 -12.04379 -12.00043 -11.81750 -11.73517 -11.54810 -11.20343 -11.04024 -10.79554 -10.67085 -10.63242 -10.18846 -10.16906 -10.09468 -9.94494 -9.75356 -9.70232 -9.68372 -9.26308 -9.12565 -8.53434 -8.19638 -6.70425 -5.82140 -3.30704 0.86942 1.07127 2.78293 2.92563 3.34558 3.41576 3.42188 3.54987 3.66732 4.35239 4.43497 4.55822 4.64369 4.74181 4.87312 4.98310 5.07487 5.08955 5.10847 5.14726 5.25018 5.31312 5.39778 5.57529 5.58128 5.63962 5.80362 5.87098 6.00114 6.03712 6.09721 6.19416 6.24033 6.31678 6.44917 6.47695 6.58195 6.71833 6.82739 6.89182 6.90159 6.99633 7.05112 7.55377 7.63175 7.70986 7.76681 7.88011 8.37233 8.53429 9.13971 9.75832 10.32383 11.22526 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.029700 B = 0.002337 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.545085 B =11977.857065 C =12507.758062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.179 3.821 3 H 0.106 0.894 4 C 0.095 3.905 5 N -0.593 5.593 6 C 0.511 3.489 7 O -0.535 6.535 8 C 0.049 3.951 9 O -0.361 6.361 10 C 0.112 3.888 11 C 0.125 3.875 12 C -0.143 4.143 13 C -0.077 4.077 14 C -0.177 4.177 15 C 0.097 3.903 16 N -0.484 5.484 17 C 0.091 3.909 18 C 0.154 3.846 19 H 0.032 0.968 20 C -0.136 4.136 21 N -0.580 5.580 22 C -0.253 4.253 23 H 0.071 0.929 24 C 0.005 3.995 25 N -0.895 5.895 26 Si 0.899 3.101 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.285 1.285 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.021 0.979 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.151 0.849 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.157 0.843 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.040 0.960 47 H 0.067 0.933 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.655 -17.089 10.540 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.072 3.928 3 H 0.124 0.876 4 C -0.028 4.028 5 N -0.326 5.326 6 C 0.297 3.703 7 O -0.412 6.412 8 C -0.031 4.031 9 O -0.279 6.279 10 C 0.035 3.965 11 C -0.012 4.012 12 C -0.162 4.162 13 C -0.103 4.103 14 C -0.197 4.197 15 C -0.060 4.060 16 N -0.195 5.195 17 C -0.034 4.034 18 C 0.046 3.954 19 H 0.050 0.950 20 C -0.194 4.194 21 N -0.303 5.303 22 C -0.383 4.383 23 H 0.089 0.911 24 C -0.194 4.194 25 N -0.539 5.539 26 Si 0.729 3.271 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.211 1.211 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.040 0.960 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.169 0.831 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.174 0.826 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.086 0.914 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.788 -17.070 10.480 20.386 hybrid contribution 0.421 0.980 -0.054 1.068 sum -3.368 -16.090 10.426 19.466 Atomic orbital electron populations 1.21973 0.98061 0.98602 1.01128 1.20739 0.92396 0.96950 0.82697 0.87623 1.22515 1.00060 0.78798 1.01468 1.47945 1.53314 1.10804 1.20555 1.20001 0.78966 0.88082 0.83221 1.90672 1.51636 1.68886 1.30007 1.22277 0.96767 0.94055 0.89995 1.87905 1.74111 1.23058 1.42833 1.20932 0.98190 0.82668 0.94713 1.20780 0.95842 0.89200 0.95377 1.22115 0.98010 1.02279 0.93843 1.21684 0.95051 0.96279 0.97308 1.22154 1.02126 0.94537 1.00900 1.22636 0.94248 0.99962 0.89137 1.67206 1.11033 1.17776 1.23468 1.22583 0.99367 0.94877 0.86561 1.20854 0.96480 0.86707 0.91362 0.94998 1.21781 1.00733 0.98245 0.98668 1.44139 1.63147 1.02846 1.20148 1.19126 1.13285 0.92305 1.13558 0.91124 1.25049 0.96247 0.98735 0.99397 1.70032 1.23494 1.10448 1.49881 0.86435 0.81281 0.79507 0.79875 1.20968 1.21740 1.21128 0.95239 0.90605 0.95983 0.90046 0.92183 0.90296 0.90076 0.90761 0.90669 0.83112 0.84665 0.84829 0.82624 0.91270 0.91318 0.92569 0.94088 0.91415 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.96 37.16 0.33 -2.75 16 2 C 0.18 4.00 2.34 -67.48 -0.16 3.84 16 3 H 0.11 2.67 6.04 -51.93 -0.31 2.36 16 4 C 0.09 1.85 5.96 -3.59 -0.02 1.83 16 5 N -0.59 -10.32 2.60 -172.21 -0.45 -10.77 16 6 C 0.51 8.82 7.77 -10.99 -0.09 8.74 16 7 O -0.53 -11.17 15.90 -14.35 -0.23 -11.40 16 8 C 0.05 0.62 4.76 36.00 0.17 0.80 16 9 O -0.36 -4.96 8.33 -55.14 -0.46 -5.42 16 10 C 0.11 1.24 6.48 36.01 0.23 1.47 16 11 C 0.13 1.51 6.78 -82.59 -0.56 0.95 16 12 C -0.14 -1.68 9.41 -39.44 -0.37 -2.06 16 13 C -0.08 -0.73 10.18 -39.28 -0.40 -1.13 16 14 C -0.18 -1.44 10.11 -39.45 -0.40 -1.84 16 15 C 0.10 0.89 11.18 -17.55 -0.20 0.69 16 16 N -0.48 -5.63 10.27 -9.47 -0.10 -5.73 16 17 C 0.09 1.39 5.84 -3.37 -0.02 1.37 16 18 C 0.15 2.83 3.24 -67.26 -0.22 2.61 16 19 H 0.03 0.63 7.38 -51.92 -0.38 0.25 16 20 C -0.14 -2.23 7.94 37.15 0.29 -1.93 16 21 N -0.58 -13.05 2.68 -156.76 -0.42 -13.47 16 22 C -0.25 -6.27 8.55 -15.06 -0.13 -6.40 16 23 H 0.07 1.70 6.25 -52.49 -0.33 1.37 16 24 C 0.00 0.12 4.92 -17.43 -0.09 0.04 16 25 N -0.89 -24.16 10.13 55.49 0.56 -23.59 16 26 Si 0.90 20.59 29.59 -169.99 -5.03 15.56 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 30 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.08 1.89 7.16 -51.93 -0.37 1.52 16 32 H 0.02 0.46 7.00 -51.93 -0.36 0.10 16 33 H 0.08 1.64 6.97 -51.93 -0.36 1.28 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.08 0.80 7.90 -51.93 -0.41 0.39 16 36 H 0.08 0.90 7.73 -51.93 -0.40 0.50 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.15 1.97 7.00 -52.49 -0.37 1.60 16 40 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 41 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 44 H 0.07 0.81 5.91 -51.93 -0.31 0.50 16 45 H 0.06 0.92 7.47 -51.93 -0.39 0.53 16 46 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 1.24 7.58 -51.93 -0.39 0.85 16 48 H 0.25 6.77 8.32 -40.82 -0.34 6.43 16 LS Contribution 380.98 15.07 5.74 5.74 Total: -1.00 -30.90 380.98 -9.32 -40.22 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.33 Total: 2.65 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -1.61 Total: 6.22 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.40 Total: -53.56 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.69 Total: -16.82 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.90 -9.32 -40.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880454870.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.659 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds