Wall clock time and date at job start Tue Mar 31 2020 17:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.61181 * 2 1 4 4 C 1.53380 * 109.60542 * 120.34214 * 2 1 3 5 5 N 1.46965 * 108.63644 * 70.31847 * 4 2 1 6 6 C 1.34775 * 120.59295 * 235.20485 * 5 4 2 7 7 O 1.21282 * 119.99907 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99962 * 180.02562 * 6 5 4 9 9 O 1.42900 * 109.47250 * 179.97438 * 8 6 5 10 10 C 1.42901 * 114.00273 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.47012 * 179.97438 * 10 9 8 12 12 C 1.38222 * 119.62075 * 359.97420 * 11 10 9 13 13 C 1.38624 * 119.16185 * 180.02562 * 12 11 10 14 14 C 1.38670 * 118.41982 * 0.02562 * 13 12 11 15 15 C 1.38175 * 119.16381 * 359.97438 * 14 13 12 16 16 N 1.31857 * 119.61309 * 180.02562 * 11 10 9 17 17 C 1.46965 * 118.81272 * 55.47336 * 5 4 2 18 18 C 1.53814 * 108.40100 * 304.48896 * 17 5 4 19 19 H 1.09007 * 109.87597 * 289.76411 * 18 17 5 20 20 C 1.52995 * 109.53356 * 169.30174 * 18 17 5 21 21 N 1.46965 * 109.60865 * 239.48307 * 2 1 3 22 22 C 1.36934 * 120.59454 * 115.46547 * 21 2 1 23 23 H 1.08002 * 120.00131 * 150.96329 * 22 21 2 24 24 C 1.38812 * 119.99850 * 330.95772 * 22 21 2 25 25 N 1.31619 * 120.00042 * 343.15243 * 24 22 21 26 26 Si 1.86799 * 119.99995 * 163.14264 * 24 22 21 27 27 H 1.48506 * 109.46731 * 60.00757 * 26 24 22 28 28 H 1.48500 * 109.47217 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47531 * 300.00448 * 26 24 22 30 30 H 1.09007 * 109.47017 * 299.66617 * 1 2 3 31 31 H 1.08998 * 109.47073 * 59.65724 * 1 2 3 32 32 H 1.08998 * 109.47696 * 179.65929 * 1 2 3 33 33 H 1.08993 * 109.60939 * 310.57108 * 4 2 1 34 34 H 1.09004 * 109.60436 * 190.06149 * 4 2 1 35 35 H 1.08999 * 109.47465 * 59.99366 * 8 6 5 36 36 H 1.09000 * 109.46936 * 299.99053 * 8 6 5 37 37 H 1.08997 * 109.47003 * 59.99707 * 10 9 8 38 38 H 1.08996 * 109.46643 * 299.99567 * 10 9 8 39 39 H 1.08001 * 120.41765 * 0.04653 * 12 11 10 40 40 H 1.08003 * 120.78820 * 179.97438 * 13 12 11 41 41 H 1.08001 * 120.41518 * 179.97438 * 14 13 12 42 42 H 1.08001 * 119.61495 * 179.97438 * 15 14 13 43 43 H 1.09003 * 109.60738 * 64.26927 * 17 5 4 44 44 H 1.08996 * 109.60935 * 184.77812 * 17 5 4 45 45 H 1.09003 * 109.47381 * 302.53376 * 20 18 17 46 46 H 1.09007 * 109.47113 * 62.53680 * 20 18 17 47 47 H 1.09003 * 109.46999 * 182.53185 * 20 18 17 48 48 H 0.97004 * 120.00121 * 175.69539 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0267 0.0000 4 6 2.0446 -0.7299 1.2470 5 7 1.7604 -2.1645 1.1022 6 6 1.0603 -2.8238 2.0465 7 8 0.6591 -2.2331 3.0269 8 6 0.7770 -4.2950 1.8848 9 8 0.0261 -4.7617 3.0074 10 6 -0.2976 -6.1525 2.9525 11 6 -1.0849 -6.5338 4.1797 12 6 -1.3745 -5.5739 5.1312 13 6 -2.0988 -5.9352 6.2566 14 6 -2.5061 -7.2546 6.3838 15 6 -2.1793 -8.1588 5.3914 16 7 -1.4885 -7.7796 4.3339 17 6 2.2584 -2.8687 -0.0878 18 6 1.7390 -2.1376 -1.3374 19 1 0.6640 -2.2895 -1.4356 20 6 2.4497 -2.6792 -2.5793 21 7 2.0232 -0.7030 -1.1926 22 6 2.7345 -0.0332 -2.1521 23 1 3.4688 -0.5583 -2.7450 24 6 2.5117 1.3206 -2.3627 25 7 1.4183 1.8876 -1.8987 26 14 3.7639 2.3378 -3.3044 27 1 3.9234 1.7834 -4.6728 28 1 3.2947 3.7441 -3.3912 29 1 5.0691 2.2947 -2.5975 30 1 -0.3633 0.5087 0.8930 31 1 -0.3633 0.5191 -0.8869 32 1 -0.3634 -1.0276 -0.0061 33 1 1.5383 -0.3441 2.1317 34 1 3.1198 -0.5777 1.3421 35 1 1.7180 -4.8418 1.8248 36 1 0.2041 -4.4564 0.9716 37 1 0.6209 -6.7381 2.9140 38 1 -0.8933 -6.3519 2.0618 39 1 -1.0410 -4.5551 4.9992 40 1 -2.3394 -5.2065 7.0166 41 1 -3.0716 -7.5714 7.2477 42 1 -2.4924 -9.1883 5.4833 43 1 3.3484 -2.8654 -0.0854 44 1 1.8932 -3.8957 -0.0846 45 1 3.5267 -2.5570 -2.4639 46 1 2.2148 -3.7368 -2.7001 47 1 2.1138 -2.1297 -3.4587 48 1 1.2917 2.8449 -1.9910 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880454870.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:17 Heat of formation + Delta-G solvation = -23.479053 kcal Electronic energy + Delta-G solvation = -29058.629369 eV Core-core repulsion = 25114.302080 eV Total energy + Delta-G solvation = -3944.327289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.32552 -41.05652 -39.22616 -38.28103 -35.68377 -34.33729 -33.59664 -33.26295 -32.81765 -29.93022 -29.55454 -27.81323 -27.40922 -26.37640 -25.34253 -24.37049 -22.97025 -22.52809 -21.31502 -20.11245 -18.70078 -17.94913 -17.87466 -17.58824 -17.38692 -16.89215 -16.77585 -16.33697 -16.18083 -15.96751 -15.75816 -15.33816 -15.21167 -14.96138 -14.81266 -14.31632 -14.17529 -13.95255 -13.62007 -13.51128 -13.19634 -13.11838 -12.90754 -12.77238 -12.72553 -12.51290 -12.43483 -12.32556 -12.25424 -11.97706 -11.75901 -11.50962 -11.37095 -10.99764 -10.75948 -10.69449 -10.44412 -10.44189 -9.85959 -9.71658 -8.53124 -7.75218 -5.24954 0.14447 0.33469 1.50539 1.53500 1.58130 1.60154 1.69844 2.54840 2.62587 2.81969 3.36500 3.44996 3.55226 3.70254 3.86446 4.02862 4.10831 4.16701 4.18942 4.23782 4.27437 4.33508 4.38137 4.40294 4.45994 4.50444 4.63754 4.68589 4.70832 4.73382 4.81739 4.90870 4.92441 4.97132 5.10548 5.16255 5.18815 5.31392 5.33756 5.45778 5.60425 5.73381 5.74379 5.76696 5.84751 6.01276 6.47066 6.52872 6.96605 7.18951 7.22866 7.92559 8.44880 9.26443 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.029700 B = 0.002337 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.545085 B =11977.857065 C =12507.758062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.182 3.818 3 H 0.071 0.929 4 C 0.107 3.893 5 N -0.595 5.595 6 C 0.505 3.495 7 O -0.580 6.580 8 C 0.054 3.946 9 O -0.387 6.387 10 C 0.113 3.887 11 C 0.105 3.895 12 C -0.168 4.168 13 C -0.083 4.083 14 C -0.170 4.170 15 C 0.091 3.909 16 N -0.504 5.504 17 C 0.098 3.902 18 C 0.144 3.856 19 H 0.020 0.980 20 C -0.128 4.128 21 N -0.595 5.595 22 C -0.246 4.246 23 H 0.079 0.921 24 C -0.050 4.050 25 N -0.925 5.925 26 Si 0.955 3.045 27 H -0.278 1.278 28 H -0.304 1.304 29 H -0.282 1.282 30 H 0.029 0.971 31 H 0.044 0.956 32 H 0.026 0.974 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.154 0.846 41 H 0.168 0.832 42 H 0.187 0.813 43 H 0.078 0.922 44 H 0.117 0.883 45 H 0.056 0.944 46 H 0.083 0.917 47 H 0.040 0.960 48 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.224 -20.832 10.904 23.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.074 3.926 3 H 0.088 0.912 4 C -0.017 4.017 5 N -0.328 5.328 6 C 0.294 3.706 7 O -0.460 6.460 8 C -0.025 4.025 9 O -0.305 6.305 10 C 0.037 3.963 11 C -0.031 4.031 12 C -0.188 4.188 13 C -0.108 4.108 14 C -0.189 4.189 15 C -0.066 4.066 16 N -0.215 5.215 17 C -0.026 4.026 18 C 0.038 3.962 19 H 0.038 0.962 20 C -0.186 4.186 21 N -0.318 5.318 22 C -0.376 4.376 23 H 0.097 0.903 24 C -0.245 4.245 25 N -0.571 5.571 26 Si 0.785 3.215 27 H -0.204 1.204 28 H -0.231 1.231 29 H -0.208 1.208 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.134 0.866 36 H 0.124 0.876 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.146 0.854 40 H 0.171 0.829 41 H 0.186 0.814 42 H 0.204 0.796 43 H 0.097 0.903 44 H 0.135 0.865 45 H 0.075 0.925 46 H 0.102 0.898 47 H 0.059 0.941 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.336 -20.865 10.821 23.740 hybrid contribution 0.212 2.047 -0.098 2.060 sum -3.124 -18.819 10.722 21.883 Atomic orbital electron populations 1.21764 0.98418 0.98251 0.99563 1.20524 0.91963 0.95826 0.84257 0.91155 1.22109 0.99777 0.80568 0.99289 1.47995 1.53465 1.09794 1.21532 1.20872 0.77567 0.90011 0.82152 1.90654 1.53159 1.70317 1.31835 1.22322 0.98921 0.90629 0.90632 1.87889 1.74497 1.24770 1.43383 1.21052 0.99072 0.81332 0.94872 1.20969 0.96626 0.89570 0.95963 1.22058 0.99831 1.01437 0.95444 1.21989 0.94337 0.97609 0.96911 1.22524 1.01273 0.93545 1.01586 1.23271 0.93193 1.01593 0.88541 1.67250 1.12050 1.17436 1.24757 1.22648 0.99942 0.96358 0.83623 1.21133 0.96330 0.84539 0.94231 0.96196 1.21702 1.00287 1.00376 0.96212 1.44353 1.63092 1.04658 1.19679 1.19447 1.12860 0.92411 1.12871 0.90314 1.25695 0.97714 1.00046 1.01077 1.70190 1.25077 1.09779 1.52044 0.85539 0.79430 0.77536 0.79034 1.20381 1.23094 1.20833 0.95170 0.93684 0.95460 0.91186 0.91947 0.86634 0.87621 0.89052 0.89487 0.85356 0.82878 0.81401 0.79593 0.90325 0.86505 0.92491 0.89792 0.94090 0.94650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.96 71.98 0.64 -4.93 16 2 C 0.18 8.32 2.34 45.03 0.11 8.43 16 3 H 0.07 3.74 6.04 -2.39 -0.01 3.72 16 4 C 0.11 4.22 5.96 86.42 0.52 4.73 16 5 N -0.60 -19.73 2.60 -817.14 -2.12 -21.86 16 6 C 0.51 16.68 7.77 87.66 0.68 17.36 16 7 O -0.58 -24.40 15.90 16.00 0.25 -24.14 16 8 C 0.05 1.20 4.76 71.23 0.34 1.54 16 9 O -0.39 -10.05 8.33 -129.94 -1.08 -11.13 16 10 C 0.11 2.27 6.48 71.24 0.46 2.73 16 11 C 0.11 2.43 6.78 42.55 0.29 2.72 16 12 C -0.17 -3.95 9.41 22.36 0.21 -3.74 16 13 C -0.08 -1.45 10.18 22.47 0.23 -1.22 16 14 C -0.17 -2.31 10.11 22.36 0.23 -2.08 16 15 C 0.09 1.42 11.18 84.67 0.95 2.37 16 16 N -0.50 -10.82 10.27 -183.89 -1.89 -12.71 16 17 C 0.10 2.64 5.84 86.57 0.51 3.15 16 18 C 0.14 5.02 3.24 45.18 0.15 5.17 16 19 H 0.02 0.76 7.38 -2.38 -0.02 0.74 16 20 C -0.13 -3.81 7.94 71.98 0.57 -3.24 16 21 N -0.59 -26.72 2.68 -649.87 -1.74 -28.46 16 22 C -0.25 -12.18 8.55 84.03 0.72 -11.46 16 23 H 0.08 3.72 6.25 -2.91 -0.02 3.70 16 24 C -0.05 -2.62 4.92 84.86 0.42 -2.20 16 25 N -0.92 -52.04 10.13 21.65 0.22 -51.82 16 26 Si 0.95 43.20 29.59 68.60 2.03 45.23 16 27 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 28 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 29 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 30 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.04 2.33 7.16 -2.39 -0.02 2.31 16 32 H 0.03 1.18 7.00 -2.39 -0.02 1.16 16 33 H 0.07 2.91 6.97 -2.39 -0.02 2.89 16 34 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.12 1.76 7.90 -2.39 -0.02 1.74 16 36 H 0.11 1.87 7.73 -2.39 -0.02 1.85 16 37 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.13 3.53 7.00 -2.91 -0.02 3.51 16 40 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 41 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 42 H 0.19 1.59 8.06 -2.91 -0.02 1.56 16 43 H 0.08 2.05 8.12 -2.39 -0.02 2.03 16 44 H 0.12 2.07 5.91 -2.39 -0.01 2.05 16 45 H 0.06 1.68 7.47 -2.39 -0.02 1.67 16 46 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 47 H 0.04 1.43 7.58 -2.39 -0.02 1.41 16 48 H 0.24 13.68 8.32 -92.71 -0.77 12.90 16 Total: -1.00 -71.33 380.98 3.63 -67.71 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.95 Total: 17.86 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 7.01 Total: 19.33 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -5.54 Total: -114.85 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.83 Total: -35.27 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -71.33 3.63 -67.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880454870.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.230 kcal (2) G-P(sol) polarization free energy of solvation -71.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds