Wall clock time and date at job start Tue Mar 31 2020 17:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.61008 * 2 1 4 4 C 1.52938 * 109.68715 * 239.59828 * 2 1 3 5 5 N 1.46963 * 108.86995 * 190.97146 * 4 2 1 6 6 C 1.34776 * 120.58888 * 235.20836 * 5 4 2 7 7 O 1.21286 * 119.99996 * 179.72349 * 6 5 4 8 8 C 1.50693 * 120.00388 * 359.72145 * 6 5 4 9 9 O 1.42903 * 109.47658 * 179.97438 * 8 6 5 10 10 C 1.42899 * 114.00588 * 179.97438 * 9 8 6 11 11 C 1.50699 * 109.47166 * 180.02562 * 10 9 8 12 12 C 1.38225 * 119.62003 * 0.02562 * 11 10 9 13 13 C 1.38620 * 119.16002 * 180.02562 * 12 11 10 14 14 C 1.38674 * 118.42382 * 359.97438 * 13 12 11 15 15 C 1.38179 * 119.16184 * 0.28164 * 14 13 12 16 16 N 1.31855 * 119.61379 * 180.02562 * 11 10 9 17 17 C 1.46961 * 118.81570 * 54.93434 * 5 4 2 18 18 C 1.53365 * 108.63441 * 305.02572 * 17 5 4 19 19 H 1.09002 * 109.61021 * 289.67733 * 18 17 5 20 20 C 1.53006 * 109.61114 * 169.16571 * 18 17 5 21 21 N 1.46962 * 108.64015 * 49.42265 * 18 17 5 22 22 C 1.36933 * 120.59978 * 124.79292 * 21 18 17 23 23 H 1.08006 * 119.99806 * 306.59146 * 22 21 18 24 24 C 1.38809 * 120.00116 * 126.59038 * 22 21 18 25 25 N 1.31616 * 120.00043 * 335.57706 * 24 22 21 26 26 Si 1.86809 * 120.00081 * 155.57950 * 24 22 21 27 27 H 1.48494 * 109.47055 * 59.99553 * 26 24 22 28 28 H 1.48496 * 109.46867 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.46740 * 299.99953 * 26 24 22 30 30 H 1.09004 * 109.47187 * 307.57130 * 1 2 3 31 31 H 1.08999 * 109.47138 * 67.56174 * 1 2 3 32 32 H 1.08996 * 109.47501 * 187.56672 * 1 2 3 33 33 H 1.08996 * 109.52173 * 71.13336 * 4 2 1 34 34 H 1.08995 * 109.45780 * 310.77043 * 4 2 1 35 35 H 1.09005 * 109.47000 * 60.00209 * 8 6 5 36 36 H 1.08997 * 109.47185 * 299.99911 * 8 6 5 37 37 H 1.09006 * 109.46505 * 60.00321 * 10 9 8 38 38 H 1.08998 * 109.47025 * 300.00635 * 10 9 8 39 39 H 1.08002 * 120.41662 * 359.97438 * 12 11 10 40 40 H 1.08002 * 120.79183 * 180.02562 * 13 12 11 41 41 H 1.08004 * 120.42010 * 180.02562 * 14 13 12 42 42 H 1.07994 * 119.61801 * 179.70024 * 15 14 13 43 43 H 1.09007 * 109.60966 * 64.76951 * 17 5 4 44 44 H 1.08993 * 109.61143 * 185.28077 * 17 5 4 45 45 H 1.08999 * 109.47089 * 59.99839 * 20 18 17 46 46 H 1.09003 * 109.46988 * 179.97438 * 20 18 17 47 47 H 1.08998 * 109.46849 * 299.99681 * 20 18 17 48 48 H 0.97004 * 119.99719 * 185.08111 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0452 -0.7287 -1.2420 5 7 3.4907 -0.9507 -1.0974 6 6 4.3492 -0.5158 -2.0409 7 8 5.5406 -0.7004 -1.9083 8 6 3.8289 0.1998 -3.2608 9 8 4.9240 0.5591 -4.1057 10 6 4.5376 1.2462 -5.2976 11 6 5.7647 1.5741 -6.1086 12 6 7.0115 1.2019 -5.6421 13 6 8.1338 1.5088 -6.3956 14 6 7.9595 2.1812 -7.5958 15 6 6.6823 2.5257 -7.9952 16 7 5.6365 2.2127 -7.2550 17 6 3.9840 -1.6500 0.0974 18 6 3.4692 -0.9164 1.3420 19 1 3.9757 0.0442 1.4360 20 6 3.7369 -1.7658 2.5862 21 7 2.0232 -0.6993 1.1949 22 6 1.1510 -1.1404 2.1539 23 1 1.1722 -2.1731 2.4693 24 6 0.2395 -0.2602 2.7208 25 7 0.4906 1.0318 2.7297 26 14 -1.3434 -0.9093 3.4709 27 1 -1.0193 -1.8497 4.5735 28 1 -2.1390 0.2247 4.0058 29 1 -2.1296 -1.6190 2.4301 30 1 -0.3634 0.6266 0.8145 31 1 -0.3633 0.3922 -0.9499 32 1 -0.3634 -1.0187 0.1353 33 1 1.8551 -0.1205 -2.1262 34 1 1.5356 -1.6874 -1.3380 35 1 3.2963 1.1001 -2.9544 36 1 3.1499 -0.4566 -3.8051 37 1 4.0191 2.1680 -5.0336 38 1 3.8738 0.6111 -5.8841 39 1 7.1100 0.6794 -4.7021 40 1 9.1206 1.2302 -6.0564 41 1 8.8115 2.4360 -8.2087 42 1 6.5384 3.0537 -8.9262 43 1 3.6156 -2.6759 0.0990 44 1 5.0739 -1.6500 0.0975 45 1 4.8086 -1.9382 2.6848 46 1 3.3707 -1.2422 3.4693 47 1 3.2224 -2.7220 2.4908 48 1 -0.1095 1.6393 3.1901 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880454872.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:21 Heat of formation + Delta-G solvation = -4.689623 kcal Electronic energy + Delta-G solvation = -28919.590488 eV Core-core repulsion = 24976.077970 eV Total energy + Delta-G solvation = -3943.512518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.43009 -39.80111 -37.95905 -37.00253 -34.20076 -33.13934 -32.83618 -32.08685 -31.30651 -28.88071 -27.72378 -26.74249 -25.86193 -25.26781 -23.72408 -23.42901 -22.21095 -20.44836 -19.93542 -18.84179 -17.60318 -16.99134 -16.74913 -16.49856 -16.01273 -15.81091 -15.50890 -15.22492 -14.84076 -14.80758 -14.52914 -14.24736 -13.89862 -13.70455 -13.38678 -13.13745 -13.02995 -12.79965 -12.20829 -12.11964 -11.91286 -11.75096 -11.63671 -11.57332 -11.36898 -11.05072 -10.79904 -10.57644 -10.50657 -10.38366 -10.17563 -10.11223 -9.97744 -9.93128 -9.79638 -9.68269 -9.33400 -9.11553 -8.42570 -8.06812 -6.42468 -5.86535 -3.59949 0.87757 1.07842 2.77312 2.89558 3.26542 3.33692 3.36332 3.55842 3.65818 4.33323 4.37675 4.56714 4.64760 4.74742 4.88159 5.00384 5.06016 5.10060 5.12043 5.14863 5.20463 5.27572 5.40974 5.63345 5.64586 5.68126 5.87346 5.92172 5.98482 6.03990 6.07439 6.14321 6.31645 6.39621 6.48087 6.50241 6.52923 6.62486 6.76216 6.79407 6.97907 7.08344 7.24159 7.29952 7.52913 7.72120 7.78828 7.84593 8.49228 8.53635 9.09099 9.63373 10.41620 11.06783 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024752 B = 0.002365 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.944531 B =11836.544947 C =12562.994123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.180 3.820 3 H 0.032 0.968 4 C 0.086 3.914 5 N -0.595 5.595 6 C 0.512 3.488 7 O -0.538 6.538 8 C 0.049 3.951 9 O -0.362 6.362 10 C 0.112 3.888 11 C 0.126 3.874 12 C -0.143 4.143 13 C -0.077 4.077 14 C -0.178 4.178 15 C 0.098 3.902 16 N -0.484 5.484 17 C 0.102 3.898 18 C 0.156 3.844 19 H 0.029 0.971 20 C -0.126 4.126 21 N -0.575 5.575 22 C -0.273 4.273 23 H 0.054 0.946 24 C 0.043 3.957 25 N -0.872 5.872 26 Si 0.883 3.117 27 H -0.278 1.278 28 H -0.290 1.290 29 H -0.277 1.277 30 H 0.089 0.911 31 H 0.025 0.975 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.151 0.849 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.157 0.843 43 H 0.063 0.937 44 H 0.081 0.919 45 H 0.037 0.963 46 H 0.067 0.933 47 H 0.052 0.948 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.932 0.641 -16.770 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.073 3.927 3 H 0.049 0.951 4 C -0.039 4.039 5 N -0.328 5.328 6 C 0.299 3.701 7 O -0.415 6.415 8 C -0.031 4.031 9 O -0.280 6.280 10 C 0.035 3.965 11 C -0.011 4.011 12 C -0.163 4.163 13 C -0.103 4.103 14 C -0.197 4.197 15 C -0.060 4.060 16 N -0.195 5.195 17 C -0.022 4.022 18 C 0.049 3.951 19 H 0.047 0.953 20 C -0.184 4.184 21 N -0.300 5.300 22 C -0.403 4.403 23 H 0.071 0.929 24 C -0.161 4.161 25 N -0.511 5.511 26 Si 0.711 3.289 27 H -0.204 1.204 28 H -0.216 1.216 29 H -0.203 1.203 30 H 0.108 0.892 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.169 0.831 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.174 0.826 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.056 0.944 46 H 0.086 0.914 47 H 0.071 0.929 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.800 0.893 -16.892 18.627 hybrid contribution -0.383 -0.269 0.587 0.750 sum 7.418 0.624 -16.305 17.924 Atomic orbital electron populations 1.21990 0.94903 1.02878 1.00389 1.20527 0.93850 0.93616 0.84697 0.95059 1.22611 0.79421 1.01299 1.00542 1.47957 1.07407 1.56673 1.20791 1.20030 0.86562 0.79642 0.83867 1.90665 1.15543 1.57226 1.78113 1.22268 0.89542 1.00049 0.91216 1.87892 1.31026 1.76877 1.32192 1.20939 0.92968 0.97193 0.85434 1.20784 0.94239 0.94508 0.91611 1.22110 0.92448 0.99915 1.01810 1.21678 0.99467 0.95382 0.93811 1.22154 0.98986 1.00736 0.97867 1.22642 0.87923 0.96835 0.98560 1.67210 1.35020 1.11955 1.05267 1.22330 0.99429 0.95522 0.84904 1.20881 0.87228 0.95539 0.91439 0.95333 1.21630 0.98194 1.00031 0.98546 1.43942 0.99441 1.67734 1.18840 1.18556 1.12105 0.92544 1.17076 0.92865 1.25556 0.99828 0.95251 0.95417 1.70098 1.36433 1.02513 1.42036 0.86727 0.84343 0.78412 0.79441 1.20415 1.21552 1.20263 0.89243 0.95625 0.92644 0.91423 0.91336 0.89877 0.90180 0.90593 0.90728 0.83134 0.84684 0.84835 0.82621 0.91902 0.90091 0.94432 0.91398 0.92851 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 7.83 37.16 0.29 -2.62 16 2 C 0.18 3.71 3.29 -67.71 -0.22 3.49 16 3 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.09 1.42 5.79 -3.82 -0.02 1.39 16 5 N -0.60 -10.48 2.95 -172.76 -0.51 -10.99 16 6 C 0.51 8.91 7.77 -10.99 -0.09 8.82 16 7 O -0.54 -11.11 15.90 -14.36 -0.23 -11.34 16 8 C 0.05 0.65 4.76 36.00 0.17 0.82 16 9 O -0.36 -5.05 8.33 -55.14 -0.46 -5.51 16 10 C 0.11 1.27 6.48 36.01 0.23 1.50 16 11 C 0.13 1.54 6.78 -82.59 -0.56 0.98 16 12 C -0.14 -1.70 9.41 -39.45 -0.37 -2.07 16 13 C -0.08 -0.73 10.18 -39.28 -0.40 -1.13 16 14 C -0.18 -1.46 10.11 -39.44 -0.40 -1.86 16 15 C 0.10 0.90 11.18 -17.55 -0.20 0.71 16 16 N -0.48 -5.73 10.27 -9.48 -0.10 -5.82 16 17 C 0.10 1.88 5.91 -3.60 -0.02 1.86 16 18 C 0.16 3.24 3.65 -67.49 -0.25 3.00 16 19 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 20 C -0.13 -2.41 8.18 37.16 0.30 -2.10 16 21 N -0.57 -13.11 2.75 -157.27 -0.43 -13.54 16 22 C -0.27 -6.74 6.63 -15.06 -0.10 -6.84 16 23 H 0.05 1.34 7.18 -52.48 -0.38 0.97 16 24 C 0.04 1.08 3.08 -17.43 -0.05 1.02 16 25 N -0.87 -23.33 12.03 55.49 0.67 -22.67 16 26 Si 0.88 19.79 29.62 -169.99 -5.04 14.75 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 29 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 30 H 0.09 2.09 5.03 -51.93 -0.26 1.82 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 1.15 7.56 -51.93 -0.39 0.75 16 33 H 0.07 0.90 5.91 -51.93 -0.31 0.59 16 34 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16 35 H 0.08 0.98 7.71 -51.93 -0.40 0.58 16 36 H 0.08 0.86 7.92 -51.93 -0.41 0.44 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.15 1.96 7.00 -52.49 -0.37 1.59 16 40 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 42 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.06 1.13 8.12 -51.93 -0.42 0.70 16 44 H 0.08 1.51 6.99 -51.93 -0.36 1.14 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 1.44 7.75 -51.93 -0.40 1.03 16 47 H 0.05 1.00 7.43 -51.93 -0.39 0.61 16 48 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 LS Contribution 382.28 15.07 5.76 5.76 Total: -1.00 -30.64 382.28 -9.46 -40.11 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.45 Total: 2.29 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -1.68 Total: 6.97 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.37 Total: -53.03 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.69 Total: -16.85 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.04 Total: 14.75 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.64 -9.46 -40.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880454872.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.418 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds