Wall clock time and date at job start Tue Mar 31 2020 17:59:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08999 * 109.61008 * 2 1
4 4 C 1.52938 * 109.68715 * 239.59828 * 2 1 3
5 5 N 1.46963 * 108.86995 * 190.97146 * 4 2 1
6 6 C 1.34776 * 120.58888 * 235.20836 * 5 4 2
7 7 O 1.21286 * 119.99996 * 179.72349 * 6 5 4
8 8 C 1.50693 * 120.00388 * 359.72145 * 6 5 4
9 9 O 1.42903 * 109.47658 * 179.97438 * 8 6 5
10 10 C 1.42899 * 114.00588 * 179.97438 * 9 8 6
11 11 C 1.50699 * 109.47166 * 180.02562 * 10 9 8
12 12 C 1.38225 * 119.62003 * 0.02562 * 11 10 9
13 13 C 1.38620 * 119.16002 * 180.02562 * 12 11 10
14 14 C 1.38674 * 118.42382 * 359.97438 * 13 12 11
15 15 C 1.38179 * 119.16184 * 0.28164 * 14 13 12
16 16 N 1.31855 * 119.61379 * 180.02562 * 11 10 9
17 17 C 1.46961 * 118.81570 * 54.93434 * 5 4 2
18 18 C 1.53365 * 108.63441 * 305.02572 * 17 5 4
19 19 H 1.09002 * 109.61021 * 289.67733 * 18 17 5
20 20 C 1.53006 * 109.61114 * 169.16571 * 18 17 5
21 21 N 1.46962 * 108.64015 * 49.42265 * 18 17 5
22 22 C 1.36933 * 120.59978 * 124.79292 * 21 18 17
23 23 H 1.08006 * 119.99806 * 306.59146 * 22 21 18
24 24 C 1.38809 * 120.00116 * 126.59038 * 22 21 18
25 25 N 1.31616 * 120.00043 * 335.57706 * 24 22 21
26 26 Si 1.86809 * 120.00081 * 155.57950 * 24 22 21
27 27 H 1.48494 * 109.47055 * 59.99553 * 26 24 22
28 28 H 1.48496 * 109.46867 * 179.97438 * 26 24 22
29 29 H 1.48496 * 109.46740 * 299.99953 * 26 24 22
30 30 H 1.09004 * 109.47187 * 307.57130 * 1 2 3
31 31 H 1.08999 * 109.47138 * 67.56174 * 1 2 3
32 32 H 1.08996 * 109.47501 * 187.56672 * 1 2 3
33 33 H 1.08996 * 109.52173 * 71.13336 * 4 2 1
34 34 H 1.08995 * 109.45780 * 310.77043 * 4 2 1
35 35 H 1.09005 * 109.47000 * 60.00209 * 8 6 5
36 36 H 1.08997 * 109.47185 * 299.99911 * 8 6 5
37 37 H 1.09006 * 109.46505 * 60.00321 * 10 9 8
38 38 H 1.08998 * 109.47025 * 300.00635 * 10 9 8
39 39 H 1.08002 * 120.41662 * 359.97438 * 12 11 10
40 40 H 1.08002 * 120.79183 * 180.02562 * 13 12 11
41 41 H 1.08004 * 120.42010 * 180.02562 * 14 13 12
42 42 H 1.07994 * 119.61801 * 179.70024 * 15 14 13
43 43 H 1.09007 * 109.60966 * 64.76951 * 17 5 4
44 44 H 1.08993 * 109.61143 * 185.28077 * 17 5 4
45 45 H 1.08999 * 109.47089 * 59.99839 * 20 18 17
46 46 H 1.09003 * 109.46988 * 179.97438 * 20 18 17
47 47 H 1.08998 * 109.46849 * 299.99681 * 20 18 17
48 48 H 0.97004 * 119.99719 * 185.08111 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8958 1.0268 0.0000
4 6 2.0452 -0.7287 -1.2420
5 7 3.4907 -0.9507 -1.0974
6 6 4.3492 -0.5158 -2.0409
7 8 5.5406 -0.7004 -1.9083
8 6 3.8289 0.1998 -3.2608
9 8 4.9240 0.5591 -4.1057
10 6 4.5376 1.2462 -5.2976
11 6 5.7647 1.5741 -6.1086
12 6 7.0115 1.2019 -5.6421
13 6 8.1338 1.5088 -6.3956
14 6 7.9595 2.1812 -7.5958
15 6 6.6823 2.5257 -7.9952
16 7 5.6365 2.2127 -7.2550
17 6 3.9840 -1.6500 0.0974
18 6 3.4692 -0.9164 1.3420
19 1 3.9757 0.0442 1.4360
20 6 3.7369 -1.7658 2.5862
21 7 2.0232 -0.6993 1.1949
22 6 1.1510 -1.1404 2.1539
23 1 1.1722 -2.1731 2.4693
24 6 0.2395 -0.2602 2.7208
25 7 0.4906 1.0318 2.7297
26 14 -1.3434 -0.9093 3.4709
27 1 -1.0193 -1.8497 4.5735
28 1 -2.1390 0.2247 4.0058
29 1 -2.1296 -1.6190 2.4301
30 1 -0.3634 0.6266 0.8145
31 1 -0.3633 0.3922 -0.9499
32 1 -0.3634 -1.0187 0.1353
33 1 1.8551 -0.1205 -2.1262
34 1 1.5356 -1.6874 -1.3380
35 1 3.2963 1.1001 -2.9544
36 1 3.1499 -0.4566 -3.8051
37 1 4.0191 2.1680 -5.0336
38 1 3.8738 0.6111 -5.8841
39 1 7.1100 0.6794 -4.7021
40 1 9.1206 1.2302 -6.0564
41 1 8.8115 2.4360 -8.2087
42 1 6.5384 3.0537 -8.9262
43 1 3.6156 -2.6759 0.0990
44 1 5.0739 -1.6500 0.0975
45 1 4.8086 -1.9382 2.6848
46 1 3.3707 -1.2422 3.4693
47 1 3.2224 -2.7220 2.4908
48 1 -0.1095 1.6393 3.1901
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000880454872.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:59:20
Heat of formation + Delta-G solvation = -22.628897 kcal
Electronic energy + Delta-G solvation = -28920.368394 eV
Core-core repulsion = 24976.077970 eV
Total energy + Delta-G solvation = -3944.290424 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 333.184 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-41.32299 -41.05255 -39.23762 -38.32922 -35.81661 -34.73086 -33.59156 -33.10684
-32.88912 -30.11454 -29.33004 -27.79293 -27.36125 -26.69907 -25.15971 -24.35402
-22.97932 -22.06128 -21.55513 -20.29285 -18.72174 -18.08523 -17.90275 -17.55798
-17.36923 -17.00980 -16.73383 -16.34086 -16.28674 -16.07252 -15.96761 -15.46954
-15.26614 -14.87747 -14.79243 -14.39590 -14.05876 -13.97871 -13.63304 -13.36695
-13.28216 -13.18650 -13.01669 -12.83182 -12.66765 -12.53253 -12.43684 -12.32105
-12.23745 -12.10617 -11.72946 -11.64163 -11.48630 -11.02043 -10.77165 -10.74286
-10.44748 -10.21228 -9.86858 -9.67935 -8.31599 -7.73718 -5.54504 0.13749
0.33224 1.47011 1.51393 1.53567 1.55842 1.66865 2.48158 2.58800
2.81329 3.21552 3.42192 3.51828 3.68332 3.85556 4.02399 4.09493
4.12760 4.18127 4.20559 4.28070 4.33226 4.35404 4.39058 4.43310
4.52250 4.56560 4.59687 4.69638 4.76012 4.83488 4.90308 4.90714
4.96864 5.02489 5.15569 5.21440 5.30777 5.38277 5.40949 5.61281
5.64849 5.75960 5.77322 5.92203 5.97727 6.46402 6.59633 6.96238
7.13103 7.24813 7.79536 8.54378 9.13698
Molecular weight = 333.18amu
Principal moments of inertia in cm(-1)
A = 0.024752 B = 0.002365 C = 0.002228
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1130.944531 B =11836.544947 C =12562.994123
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.175 3.825
3 H 0.001 0.999
4 C 0.097 3.903
5 N -0.600 5.600
6 C 0.507 3.493
7 O -0.577 6.577
8 C 0.053 3.947
9 O -0.385 6.385
10 C 0.113 3.887
11 C 0.105 3.895
12 C -0.167 4.167
13 C -0.082 4.082
14 C -0.169 4.169
15 C 0.091 3.909
16 N -0.505 5.505
17 C 0.112 3.888
18 C 0.152 3.848
19 H -0.004 1.004
20 C -0.116 4.116
21 N -0.590 5.590
22 C -0.270 4.270
23 H 0.049 0.951
24 C 0.007 3.993
25 N -0.907 5.907
26 Si 0.936 3.064
27 H -0.278 1.278
28 H -0.297 1.297
29 H -0.267 1.267
30 H 0.057 0.943
31 H 0.062 0.938
32 H 0.049 0.951
33 H 0.109 0.891
34 H 0.080 0.920
35 H 0.101 0.899
36 H 0.115 0.885
37 H 0.085 0.915
38 H 0.091 0.909
39 H 0.129 0.871
40 H 0.155 0.845
41 H 0.169 0.831
42 H 0.187 0.813
43 H 0.073 0.927
44 H 0.077 0.923
45 H 0.064 0.936
46 H 0.040 0.960
47 H 0.057 0.943
48 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.762 0.151 -19.525 21.012
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.069 3.931
3 H 0.019 0.981
4 C -0.026 4.026
5 N -0.332 5.332
6 C 0.296 3.704
7 O -0.457 6.457
8 C -0.026 4.026
9 O -0.303 6.303
10 C 0.036 3.964
11 C -0.032 4.032
12 C -0.187 4.187
13 C -0.107 4.107
14 C -0.189 4.189
15 C -0.066 4.066
16 N -0.216 5.216
17 C -0.012 4.012
18 C 0.045 3.955
19 H 0.014 0.986
20 C -0.174 4.174
21 N -0.315 5.315
22 C -0.400 4.400
23 H 0.066 0.934
24 C -0.193 4.193
25 N -0.548 5.548
26 Si 0.763 3.237
27 H -0.204 1.204
28 H -0.223 1.223
29 H -0.192 1.192
30 H 0.075 0.925
31 H 0.081 0.919
32 H 0.068 0.932
33 H 0.127 0.873
34 H 0.098 0.902
35 H 0.119 0.881
36 H 0.133 0.867
37 H 0.103 0.897
38 H 0.109 0.891
39 H 0.147 0.853
40 H 0.173 0.827
41 H 0.187 0.813
42 H 0.204 0.796
43 H 0.092 0.908
44 H 0.095 0.905
45 H 0.083 0.917
46 H 0.059 0.941
47 H 0.076 0.924
48 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges 7.615 0.386 -19.663 21.090
hybrid contribution -0.209 -0.062 1.404 1.421
sum 7.406 0.324 -18.260 19.707
Atomic orbital electron populations
1.21856 0.94485 1.01912 1.01167 1.20566 0.94299 0.92425 0.85841
0.98095 1.22505 0.78474 1.01950 0.99701 1.48047 1.08035 1.56542
1.20577 1.20803 0.85959 0.78894 0.84729 1.90645 1.17315 1.58660
1.79127 1.22304 0.89580 1.00937 0.89783 1.87876 1.31847 1.77408
1.33200 1.21051 0.93112 0.97639 0.84611 1.20938 0.94600 0.95369
0.92260 1.22058 0.93618 1.01254 1.01771 1.21995 0.99664 0.95005
0.94085 1.22533 0.99845 0.99145 0.97344 1.23275 0.87931 0.96263
0.99171 1.67243 1.36313 1.12619 1.05420 1.22065 0.99096 0.95661
0.84348 1.20934 0.86313 0.94678 0.93558 0.98607 1.21519 0.99959
0.99343 0.96554 1.44229 0.99944 1.67745 1.19570 1.18663 1.12012
0.92201 1.17103 0.93373 1.26048 1.01981 0.95229 0.96085 1.70208
1.37312 1.03578 1.43662 0.85891 0.81462 0.77490 0.78871 1.20392
1.22339 1.19250 0.92454 0.91924 0.93200 0.87334 0.90213 0.88106
0.86701 0.89722 0.89108 0.85256 0.82711 0.81323 0.79624 0.90847
0.90481 0.91725 0.94123 0.92392 0.93809
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.35 7.83 71.98 0.56 -4.79 16
2 C 0.18 7.12 3.29 44.88 0.15 7.27 16
3 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16
4 C 0.10 2.97 5.79 86.27 0.50 3.47 16
5 N -0.60 -20.35 2.95 -818.89 -2.42 -22.77 16
6 C 0.51 17.10 7.77 87.66 0.68 17.79 16
7 O -0.58 -23.99 15.90 15.99 0.25 -23.74 16
8 C 0.05 1.28 4.76 71.23 0.34 1.62 16
9 O -0.38 -10.40 8.33 -129.94 -1.08 -11.49 16
10 C 0.11 2.41 6.48 71.24 0.46 2.87 16
11 C 0.10 2.50 6.78 42.55 0.29 2.78 16
12 C -0.17 -3.97 9.41 22.36 0.21 -3.76 16
13 C -0.08 -1.43 10.18 22.47 0.23 -1.21 16
14 C -0.17 -2.33 10.11 22.36 0.23 -2.10 16
15 C 0.09 1.46 11.18 84.67 0.95 2.41 16
16 N -0.50 -11.23 10.27 -183.89 -1.89 -13.12 16
17 C 0.11 4.10 5.91 86.41 0.51 4.61 16
18 C 0.15 6.43 3.65 45.03 0.16 6.59 16
19 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16
20 C -0.12 -4.46 8.18 71.98 0.59 -3.87 16
21 N -0.59 -27.09 2.75 -651.49 -1.79 -28.89 16
22 C -0.27 -13.39 6.63 84.03 0.56 -12.83 16
23 H 0.05 2.43 7.18 -2.91 -0.02 2.41 16
24 C 0.01 0.34 3.08 84.86 0.26 0.60 16
25 N -0.91 -49.83 12.03 21.65 0.26 -49.57 16
26 Si 0.94 40.91 29.62 68.60 2.03 42.94 16
27 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16
28 H -0.30 -13.25 7.11 99.48 0.71 -12.55 16
29 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16
30 H 0.06 2.66 5.03 -2.38 -0.01 2.65 16
31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16
32 H 0.05 1.98 7.56 -2.39 -0.02 1.96 16
33 H 0.11 2.44 5.91 -2.39 -0.01 2.42 16
34 H 0.08 2.33 8.11 -2.39 -0.02 2.31 16
35 H 0.10 2.09 7.71 -2.38 -0.02 2.07 16
36 H 0.12 1.99 7.92 -2.39 -0.02 1.97 16
37 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16
38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16
39 H 0.13 3.55 7.00 -2.91 -0.02 3.53 16
40 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16
41 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16
42 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16
43 H 0.07 2.53 8.12 -2.38 -0.02 2.51 16
44 H 0.08 2.87 6.99 -2.39 -0.02 2.86 16
45 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16
46 H 0.04 1.76 7.75 -2.39 -0.02 1.74 16
47 H 0.06 2.15 7.43 -2.39 -0.02 2.14 16
48 H 0.25 13.58 8.32 -92.71 -0.77 12.81 16
Total: -1.00 -69.52 382.28 2.99 -66.53
By element:
Atomic # 1 Polarization: 17.69 SS G_CDS: 0.95 Total: 18.64 kcal
Atomic # 6 Polarization: 14.78 SS G_CDS: 6.68 Total: 21.46 kcal
Atomic # 7 Polarization: -108.50 SS G_CDS: -5.84 Total: -114.35 kcal
Atomic # 8 Polarization: -34.39 SS G_CDS: -0.83 Total: -35.22 kcal
Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal
Total: -69.52 2.99 -66.53 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000880454872.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.902 kcal
(2) G-P(sol) polarization free energy of solvation -69.516 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.615 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.531 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.629 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds