Wall clock time and date at job start Tue Mar 31 2020 17:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.61008 * 2 1 4 4 C 1.52938 * 109.68715 * 239.59828 * 2 1 3 5 5 N 1.46963 * 108.86995 * 190.97146 * 4 2 1 6 6 C 1.34776 * 120.58888 * 235.20836 * 5 4 2 7 7 O 1.21286 * 119.99996 * 179.72349 * 6 5 4 8 8 C 1.50693 * 120.00388 * 359.72145 * 6 5 4 9 9 O 1.42903 * 109.47658 * 179.97438 * 8 6 5 10 10 C 1.42899 * 114.00588 * 179.97438 * 9 8 6 11 11 C 1.50699 * 109.47166 * 180.02562 * 10 9 8 12 12 C 1.38225 * 119.62003 * 0.02562 * 11 10 9 13 13 C 1.38620 * 119.16002 * 180.02562 * 12 11 10 14 14 C 1.38674 * 118.42382 * 359.97438 * 13 12 11 15 15 C 1.38179 * 119.16184 * 0.28164 * 14 13 12 16 16 N 1.31855 * 119.61379 * 180.02562 * 11 10 9 17 17 C 1.46961 * 118.81570 * 54.93434 * 5 4 2 18 18 C 1.53365 * 108.63441 * 305.02572 * 17 5 4 19 19 H 1.09002 * 109.61021 * 289.67733 * 18 17 5 20 20 C 1.53006 * 109.61114 * 169.16571 * 18 17 5 21 21 N 1.46962 * 108.64015 * 49.42265 * 18 17 5 22 22 C 1.36933 * 120.59978 * 124.79292 * 21 18 17 23 23 H 1.08006 * 119.99806 * 306.59146 * 22 21 18 24 24 C 1.38809 * 120.00116 * 126.59038 * 22 21 18 25 25 N 1.31616 * 120.00043 * 335.57706 * 24 22 21 26 26 Si 1.86809 * 120.00081 * 155.57950 * 24 22 21 27 27 H 1.48494 * 109.47055 * 59.99553 * 26 24 22 28 28 H 1.48496 * 109.46867 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.46740 * 299.99953 * 26 24 22 30 30 H 1.09004 * 109.47187 * 307.57130 * 1 2 3 31 31 H 1.08999 * 109.47138 * 67.56174 * 1 2 3 32 32 H 1.08996 * 109.47501 * 187.56672 * 1 2 3 33 33 H 1.08996 * 109.52173 * 71.13336 * 4 2 1 34 34 H 1.08995 * 109.45780 * 310.77043 * 4 2 1 35 35 H 1.09005 * 109.47000 * 60.00209 * 8 6 5 36 36 H 1.08997 * 109.47185 * 299.99911 * 8 6 5 37 37 H 1.09006 * 109.46505 * 60.00321 * 10 9 8 38 38 H 1.08998 * 109.47025 * 300.00635 * 10 9 8 39 39 H 1.08002 * 120.41662 * 359.97438 * 12 11 10 40 40 H 1.08002 * 120.79183 * 180.02562 * 13 12 11 41 41 H 1.08004 * 120.42010 * 180.02562 * 14 13 12 42 42 H 1.07994 * 119.61801 * 179.70024 * 15 14 13 43 43 H 1.09007 * 109.60966 * 64.76951 * 17 5 4 44 44 H 1.08993 * 109.61143 * 185.28077 * 17 5 4 45 45 H 1.08999 * 109.47089 * 59.99839 * 20 18 17 46 46 H 1.09003 * 109.46988 * 179.97438 * 20 18 17 47 47 H 1.08998 * 109.46849 * 299.99681 * 20 18 17 48 48 H 0.97004 * 119.99719 * 185.08111 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0452 -0.7287 -1.2420 5 7 3.4907 -0.9507 -1.0974 6 6 4.3492 -0.5158 -2.0409 7 8 5.5406 -0.7004 -1.9083 8 6 3.8289 0.1998 -3.2608 9 8 4.9240 0.5591 -4.1057 10 6 4.5376 1.2462 -5.2976 11 6 5.7647 1.5741 -6.1086 12 6 7.0115 1.2019 -5.6421 13 6 8.1338 1.5088 -6.3956 14 6 7.9595 2.1812 -7.5958 15 6 6.6823 2.5257 -7.9952 16 7 5.6365 2.2127 -7.2550 17 6 3.9840 -1.6500 0.0974 18 6 3.4692 -0.9164 1.3420 19 1 3.9757 0.0442 1.4360 20 6 3.7369 -1.7658 2.5862 21 7 2.0232 -0.6993 1.1949 22 6 1.1510 -1.1404 2.1539 23 1 1.1722 -2.1731 2.4693 24 6 0.2395 -0.2602 2.7208 25 7 0.4906 1.0318 2.7297 26 14 -1.3434 -0.9093 3.4709 27 1 -1.0193 -1.8497 4.5735 28 1 -2.1390 0.2247 4.0058 29 1 -2.1296 -1.6190 2.4301 30 1 -0.3634 0.6266 0.8145 31 1 -0.3633 0.3922 -0.9499 32 1 -0.3634 -1.0187 0.1353 33 1 1.8551 -0.1205 -2.1262 34 1 1.5356 -1.6874 -1.3380 35 1 3.2963 1.1001 -2.9544 36 1 3.1499 -0.4566 -3.8051 37 1 4.0191 2.1680 -5.0336 38 1 3.8738 0.6111 -5.8841 39 1 7.1100 0.6794 -4.7021 40 1 9.1206 1.2302 -6.0564 41 1 8.8115 2.4360 -8.2087 42 1 6.5384 3.0537 -8.9262 43 1 3.6156 -2.6759 0.0990 44 1 5.0739 -1.6500 0.0975 45 1 4.8086 -1.9382 2.6848 46 1 3.3707 -1.2422 3.4693 47 1 3.2224 -2.7220 2.4908 48 1 -0.1095 1.6393 3.1901 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880454872.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:20 Heat of formation + Delta-G solvation = -22.628897 kcal Electronic energy + Delta-G solvation = -28920.368394 eV Core-core repulsion = 24976.077970 eV Total energy + Delta-G solvation = -3944.290424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.32299 -41.05255 -39.23762 -38.32922 -35.81661 -34.73086 -33.59156 -33.10684 -32.88912 -30.11454 -29.33004 -27.79293 -27.36125 -26.69907 -25.15971 -24.35402 -22.97932 -22.06128 -21.55513 -20.29285 -18.72174 -18.08523 -17.90275 -17.55798 -17.36923 -17.00980 -16.73383 -16.34086 -16.28674 -16.07252 -15.96761 -15.46954 -15.26614 -14.87747 -14.79243 -14.39590 -14.05876 -13.97871 -13.63304 -13.36695 -13.28216 -13.18650 -13.01669 -12.83182 -12.66765 -12.53253 -12.43684 -12.32105 -12.23745 -12.10617 -11.72946 -11.64163 -11.48630 -11.02043 -10.77165 -10.74286 -10.44748 -10.21228 -9.86858 -9.67935 -8.31599 -7.73718 -5.54504 0.13749 0.33224 1.47011 1.51393 1.53567 1.55842 1.66865 2.48158 2.58800 2.81329 3.21552 3.42192 3.51828 3.68332 3.85556 4.02399 4.09493 4.12760 4.18127 4.20559 4.28070 4.33226 4.35404 4.39058 4.43310 4.52250 4.56560 4.59687 4.69638 4.76012 4.83488 4.90308 4.90714 4.96864 5.02489 5.15569 5.21440 5.30777 5.38277 5.40949 5.61281 5.64849 5.75960 5.77322 5.92203 5.97727 6.46402 6.59633 6.96238 7.13103 7.24813 7.79536 8.54378 9.13698 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024752 B = 0.002365 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.944531 B =11836.544947 C =12562.994123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.175 3.825 3 H 0.001 0.999 4 C 0.097 3.903 5 N -0.600 5.600 6 C 0.507 3.493 7 O -0.577 6.577 8 C 0.053 3.947 9 O -0.385 6.385 10 C 0.113 3.887 11 C 0.105 3.895 12 C -0.167 4.167 13 C -0.082 4.082 14 C -0.169 4.169 15 C 0.091 3.909 16 N -0.505 5.505 17 C 0.112 3.888 18 C 0.152 3.848 19 H -0.004 1.004 20 C -0.116 4.116 21 N -0.590 5.590 22 C -0.270 4.270 23 H 0.049 0.951 24 C 0.007 3.993 25 N -0.907 5.907 26 Si 0.936 3.064 27 H -0.278 1.278 28 H -0.297 1.297 29 H -0.267 1.267 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.129 0.871 40 H 0.155 0.845 41 H 0.169 0.831 42 H 0.187 0.813 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.040 0.960 47 H 0.057 0.943 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.762 0.151 -19.525 21.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.069 3.931 3 H 0.019 0.981 4 C -0.026 4.026 5 N -0.332 5.332 6 C 0.296 3.704 7 O -0.457 6.457 8 C -0.026 4.026 9 O -0.303 6.303 10 C 0.036 3.964 11 C -0.032 4.032 12 C -0.187 4.187 13 C -0.107 4.107 14 C -0.189 4.189 15 C -0.066 4.066 16 N -0.216 5.216 17 C -0.012 4.012 18 C 0.045 3.955 19 H 0.014 0.986 20 C -0.174 4.174 21 N -0.315 5.315 22 C -0.400 4.400 23 H 0.066 0.934 24 C -0.193 4.193 25 N -0.548 5.548 26 Si 0.763 3.237 27 H -0.204 1.204 28 H -0.223 1.223 29 H -0.192 1.192 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.119 0.881 36 H 0.133 0.867 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.147 0.853 40 H 0.173 0.827 41 H 0.187 0.813 42 H 0.204 0.796 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.059 0.941 47 H 0.076 0.924 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.615 0.386 -19.663 21.090 hybrid contribution -0.209 -0.062 1.404 1.421 sum 7.406 0.324 -18.260 19.707 Atomic orbital electron populations 1.21856 0.94485 1.01912 1.01167 1.20566 0.94299 0.92425 0.85841 0.98095 1.22505 0.78474 1.01950 0.99701 1.48047 1.08035 1.56542 1.20577 1.20803 0.85959 0.78894 0.84729 1.90645 1.17315 1.58660 1.79127 1.22304 0.89580 1.00937 0.89783 1.87876 1.31847 1.77408 1.33200 1.21051 0.93112 0.97639 0.84611 1.20938 0.94600 0.95369 0.92260 1.22058 0.93618 1.01254 1.01771 1.21995 0.99664 0.95005 0.94085 1.22533 0.99845 0.99145 0.97344 1.23275 0.87931 0.96263 0.99171 1.67243 1.36313 1.12619 1.05420 1.22065 0.99096 0.95661 0.84348 1.20934 0.86313 0.94678 0.93558 0.98607 1.21519 0.99959 0.99343 0.96554 1.44229 0.99944 1.67745 1.19570 1.18663 1.12012 0.92201 1.17103 0.93373 1.26048 1.01981 0.95229 0.96085 1.70208 1.37312 1.03578 1.43662 0.85891 0.81462 0.77490 0.78871 1.20392 1.22339 1.19250 0.92454 0.91924 0.93200 0.87334 0.90213 0.88106 0.86701 0.89722 0.89108 0.85256 0.82711 0.81323 0.79624 0.90847 0.90481 0.91725 0.94123 0.92392 0.93809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 7.83 71.98 0.56 -4.79 16 2 C 0.18 7.12 3.29 44.88 0.15 7.27 16 3 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 4 C 0.10 2.97 5.79 86.27 0.50 3.47 16 5 N -0.60 -20.35 2.95 -818.89 -2.42 -22.77 16 6 C 0.51 17.10 7.77 87.66 0.68 17.79 16 7 O -0.58 -23.99 15.90 15.99 0.25 -23.74 16 8 C 0.05 1.28 4.76 71.23 0.34 1.62 16 9 O -0.38 -10.40 8.33 -129.94 -1.08 -11.49 16 10 C 0.11 2.41 6.48 71.24 0.46 2.87 16 11 C 0.10 2.50 6.78 42.55 0.29 2.78 16 12 C -0.17 -3.97 9.41 22.36 0.21 -3.76 16 13 C -0.08 -1.43 10.18 22.47 0.23 -1.21 16 14 C -0.17 -2.33 10.11 22.36 0.23 -2.10 16 15 C 0.09 1.46 11.18 84.67 0.95 2.41 16 16 N -0.50 -11.23 10.27 -183.89 -1.89 -13.12 16 17 C 0.11 4.10 5.91 86.41 0.51 4.61 16 18 C 0.15 6.43 3.65 45.03 0.16 6.59 16 19 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 20 C -0.12 -4.46 8.18 71.98 0.59 -3.87 16 21 N -0.59 -27.09 2.75 -651.49 -1.79 -28.89 16 22 C -0.27 -13.39 6.63 84.03 0.56 -12.83 16 23 H 0.05 2.43 7.18 -2.91 -0.02 2.41 16 24 C 0.01 0.34 3.08 84.86 0.26 0.60 16 25 N -0.91 -49.83 12.03 21.65 0.26 -49.57 16 26 Si 0.94 40.91 29.62 68.60 2.03 42.94 16 27 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 28 H -0.30 -13.25 7.11 99.48 0.71 -12.55 16 29 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 30 H 0.06 2.66 5.03 -2.38 -0.01 2.65 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.05 1.98 7.56 -2.39 -0.02 1.96 16 33 H 0.11 2.44 5.91 -2.39 -0.01 2.42 16 34 H 0.08 2.33 8.11 -2.39 -0.02 2.31 16 35 H 0.10 2.09 7.71 -2.38 -0.02 2.07 16 36 H 0.12 1.99 7.92 -2.39 -0.02 1.97 16 37 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.13 3.55 7.00 -2.91 -0.02 3.53 16 40 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 41 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 42 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 43 H 0.07 2.53 8.12 -2.38 -0.02 2.51 16 44 H 0.08 2.87 6.99 -2.39 -0.02 2.86 16 45 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.04 1.76 7.75 -2.39 -0.02 1.74 16 47 H 0.06 2.15 7.43 -2.39 -0.02 2.14 16 48 H 0.25 13.58 8.32 -92.71 -0.77 12.81 16 Total: -1.00 -69.52 382.28 2.99 -66.53 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.95 Total: 18.64 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 6.68 Total: 21.46 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -5.84 Total: -114.35 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -0.83 Total: -35.22 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -69.52 2.99 -66.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880454872.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.902 kcal (2) G-P(sol) polarization free energy of solvation -69.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds