Wall clock time and date at job start Tue Mar 31 2020 17:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.60547 * 2 1 4 4 C 1.53374 * 109.61010 * 120.33911 * 2 1 3 5 5 N 1.46959 * 108.63580 * 70.31925 * 4 2 1 6 6 C 1.34777 * 120.59530 * 235.20305 * 5 4 2 7 7 O 1.21276 * 120.00194 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99868 * 180.02562 * 6 5 4 9 9 O 1.42899 * 109.47154 * 180.02562 * 8 6 5 10 10 C 1.42900 * 114.00327 * 180.02562 * 9 8 6 11 11 C 1.50694 * 109.47500 * 179.97438 * 10 9 8 12 12 C 1.38669 * 120.41833 * 89.99738 * 11 10 9 13 13 C 1.38629 * 118.42181 * 180.02562 * 12 11 10 14 14 C 1.38222 * 119.16037 * 0.02562 * 13 12 11 15 15 N 1.31857 * 120.76396 * 359.97438 * 14 13 12 16 16 C 1.31885 * 121.72300 * 359.70478 * 15 14 13 17 17 C 1.46971 * 118.81137 * 55.47905 * 5 4 2 18 18 C 1.53809 * 108.39742 * 304.48505 * 17 5 4 19 19 H 1.09006 * 109.88348 * 289.76111 * 18 17 5 20 20 C 1.52998 * 109.53721 * 169.30063 * 18 17 5 21 21 N 1.46963 * 109.60971 * 239.48652 * 2 1 3 22 22 C 1.36934 * 120.59360 * 115.46137 * 21 2 1 23 23 H 1.08002 * 119.99622 * 150.95968 * 22 21 2 24 24 C 1.38806 * 119.99938 * 330.95742 * 22 21 2 25 25 N 1.31615 * 120.00243 * 343.14450 * 24 22 21 26 26 Si 1.86809 * 119.99740 * 163.14779 * 24 22 21 27 27 H 1.48501 * 109.46979 * 60.00284 * 26 24 22 28 28 H 1.48507 * 109.46547 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47201 * 299.99666 * 26 24 22 30 30 H 1.08999 * 109.46915 * 299.66055 * 1 2 3 31 31 H 1.08996 * 109.47125 * 59.66166 * 1 2 3 32 32 H 1.08999 * 109.46782 * 179.66426 * 1 2 3 33 33 H 1.09003 * 109.60688 * 310.57482 * 4 2 1 34 34 H 1.08996 * 109.60812 * 190.06741 * 4 2 1 35 35 H 1.09003 * 109.47242 * 59.99821 * 8 6 5 36 36 H 1.09005 * 109.47100 * 300.00142 * 8 6 5 37 37 H 1.09009 * 109.46941 * 299.99928 * 10 9 8 38 38 H 1.09001 * 109.47341 * 59.99411 * 10 9 8 39 39 H 1.08001 * 120.79392 * 0.03048 * 12 11 10 40 40 H 1.08004 * 120.42352 * 180.02562 * 13 12 11 41 41 H 1.08003 * 119.62244 * 179.97438 * 14 13 12 42 42 H 1.08010 * 119.61713 * 180.31401 * 16 15 14 43 43 H 1.08999 * 109.60777 * 64.26567 * 17 5 4 44 44 H 1.08995 * 109.61014 * 184.77612 * 17 5 4 45 45 H 1.09001 * 109.47147 * 302.53690 * 20 18 17 46 46 H 1.09005 * 109.47058 * 62.53050 * 20 18 17 47 47 H 1.08991 * 109.47717 * 182.53293 * 20 18 17 48 48 H 0.96999 * 120.00199 * 175.69674 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0448 -0.7298 1.2469 5 7 1.7606 -2.1644 1.1022 6 6 1.0607 -2.8237 2.0466 7 8 0.6587 -2.2329 3.0265 8 6 0.7775 -4.2950 1.8849 9 8 0.0256 -4.7615 3.0070 10 6 -0.2971 -6.1525 2.9527 11 6 -1.0854 -6.5336 4.1791 12 6 -2.4697 -6.4528 4.1772 13 6 -3.1533 -6.8131 5.3281 14 6 -2.4374 -7.2375 6.4317 15 7 -1.1208 -7.3018 6.3976 16 6 -0.4382 -6.9730 5.3182 17 6 2.2587 -2.8686 -0.0877 18 6 1.7392 -2.1376 -1.3373 19 1 0.6643 -2.2896 -1.4356 20 6 2.4499 -2.6790 -2.5793 21 7 2.0233 -0.7029 -1.1927 22 6 2.7345 -0.0330 -2.1521 23 1 3.4688 -0.5581 -2.7450 24 6 2.5117 1.3207 -2.3626 25 7 1.4182 1.8877 -1.8987 26 14 3.7638 2.3380 -3.3045 27 1 3.9233 1.7836 -4.6729 28 1 3.2938 3.7440 -3.3922 29 1 5.0690 2.2950 -2.5976 30 1 -0.3633 0.5086 0.8930 31 1 -0.3633 0.5191 -0.8869 32 1 -0.3633 -1.0277 -0.0060 33 1 1.5384 -0.3439 2.1317 34 1 3.1199 -0.5775 1.3421 35 1 1.7185 -4.8417 1.8248 36 1 0.2046 -4.4565 0.9716 37 1 -0.8917 -6.3530 2.0613 38 1 0.6219 -6.7376 2.9155 39 1 -3.0027 -6.1172 3.2999 40 1 -4.2316 -6.7629 5.3621 41 1 -2.9624 -7.5196 7.3324 42 1 0.6396 -7.0434 5.3262 43 1 3.3487 -2.8652 -0.0853 44 1 1.8937 -3.8956 -0.0845 45 1 3.5269 -2.5568 -2.4639 46 1 2.2153 -3.7367 -2.7001 47 1 2.1141 -2.1297 -3.4587 48 1 1.2915 2.8449 -1.9910 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880454917.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:27 Heat of formation + Delta-G solvation = -6.778805 kcal Electronic energy + Delta-G solvation = -29004.952505 eV Core-core repulsion = 25061.349393 eV Total energy + Delta-G solvation = -3943.603112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.46280 -39.82424 -37.99268 -36.98767 -34.07348 -33.22863 -32.75948 -32.03246 -31.39425 -28.65132 -27.91124 -26.53939 -26.14751 -24.85993 -23.84845 -23.63534 -22.29144 -20.97357 -19.82899 -18.54330 -17.57831 -17.17251 -16.93028 -16.55838 -16.18215 -15.88043 -15.55186 -15.09771 -15.05895 -14.47201 -14.06793 -14.03663 -13.98391 -13.58766 -13.41347 -13.33282 -13.07658 -12.95278 -12.35264 -12.12112 -12.01728 -11.80599 -11.67701 -11.51926 -11.21366 -11.04465 -10.80137 -10.67741 -10.64110 -10.17503 -10.12317 -10.10427 -9.95666 -9.75938 -9.70171 -9.68874 -9.40321 -9.21250 -8.53923 -8.19378 -6.71031 -5.82661 -3.31336 0.74349 1.00141 2.91238 2.96284 3.34053 3.41197 3.41736 3.53258 3.96343 4.20580 4.42373 4.47898 4.52403 4.68050 4.70444 4.81103 4.96867 5.03261 5.09688 5.12184 5.17790 5.30665 5.33862 5.47839 5.56535 5.57335 5.79306 5.81146 5.95860 5.99712 6.08442 6.18389 6.23281 6.31435 6.38918 6.44752 6.57734 6.71283 6.82104 6.88369 6.90271 6.98890 7.04848 7.55079 7.62566 7.68028 7.76235 7.88337 8.36664 8.55078 9.13361 9.75251 10.31808 11.22002 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028950 B = 0.002310 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.949696 B =12119.466927 C =12429.892183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.179 3.821 3 H 0.106 0.894 4 C 0.094 3.906 5 N -0.593 5.593 6 C 0.510 3.490 7 O -0.533 6.533 8 C 0.046 3.954 9 O -0.356 6.356 10 C 0.104 3.896 11 C -0.139 4.139 12 C -0.053 4.053 13 C -0.176 4.176 14 C 0.101 3.899 15 N -0.488 5.488 16 C 0.121 3.879 17 C 0.092 3.908 18 C 0.154 3.846 19 H 0.032 0.968 20 C -0.136 4.136 21 N -0.580 5.580 22 C -0.254 4.254 23 H 0.071 0.929 24 C 0.005 3.995 25 N -0.895 5.895 26 Si 0.899 3.101 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.285 1.285 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.021 0.979 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.040 0.960 47 H 0.067 0.933 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.445 -18.237 7.615 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.072 3.928 3 H 0.124 0.876 4 C -0.029 4.029 5 N -0.327 5.327 6 C 0.296 3.704 7 O -0.410 6.410 8 C -0.034 4.034 9 O -0.275 6.275 10 C 0.027 3.973 11 C -0.141 4.141 12 C -0.079 4.079 13 C -0.196 4.196 14 C -0.056 4.056 15 N -0.197 5.197 16 C -0.036 4.036 17 C -0.033 4.033 18 C 0.046 3.954 19 H 0.050 0.950 20 C -0.194 4.194 21 N -0.303 5.303 22 C -0.383 4.383 23 H 0.089 0.911 24 C -0.194 4.194 25 N -0.538 5.538 26 Si 0.729 3.271 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.211 1.211 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.040 0.960 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.173 0.827 42 H 0.174 0.826 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.086 0.914 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.343 -17.902 8.958 20.485 hybrid contribution 0.168 0.738 -1.559 1.733 sum -4.175 -17.164 7.399 19.152 Atomic orbital electron populations 1.21971 0.98077 0.98571 1.01126 1.20739 0.92387 0.96955 0.82693 0.87620 1.22511 1.00062 0.78830 1.01459 1.47953 1.53405 1.10789 1.20559 1.20035 0.79003 0.88152 0.83214 1.90686 1.51468 1.68858 1.29996 1.22294 0.96763 0.94097 0.90219 1.88099 1.73811 1.22985 1.42577 1.21252 0.97968 0.83250 0.94828 1.20584 0.94566 1.01855 0.97073 1.21564 0.93601 0.94134 0.98566 1.22165 1.01663 1.01429 0.94328 1.22833 0.90029 0.94725 0.97990 1.67740 1.09111 1.15153 1.27659 1.22715 1.00404 0.93083 0.87378 1.22571 0.99346 0.94835 0.86583 1.20852 0.96445 0.86734 0.91359 0.95045 1.21779 1.00752 0.98204 0.98677 1.44137 1.63158 1.02833 1.20149 1.19122 1.13296 0.92314 1.13568 0.91128 1.25048 0.96242 0.98730 0.99389 1.70028 1.23493 1.10462 1.49866 0.86438 0.81293 0.79519 0.79864 1.20973 1.21727 1.21110 0.95236 0.90600 0.96019 0.90067 0.92182 0.90433 0.90300 0.91919 0.91810 0.84566 0.84540 0.82668 0.82626 0.91295 0.91386 0.92561 0.94126 0.91412 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.96 37.16 0.33 -2.76 16 2 C 0.18 4.02 2.34 -67.48 -0.16 3.86 16 3 H 0.11 2.69 6.04 -51.93 -0.31 2.37 16 4 C 0.09 1.87 5.96 -3.60 -0.02 1.85 16 5 N -0.59 -10.45 2.60 -172.22 -0.45 -10.90 16 6 C 0.51 9.01 7.77 -10.98 -0.09 8.92 16 7 O -0.53 -11.62 15.90 -14.35 -0.23 -11.84 16 8 C 0.05 0.59 4.76 36.01 0.17 0.76 16 9 O -0.36 -4.99 9.86 -55.14 -0.54 -5.54 16 10 C 0.10 0.99 6.09 36.00 0.22 1.21 16 11 C -0.14 -1.43 5.53 -104.49 -0.58 -2.01 16 12 C -0.05 -0.49 9.86 -39.28 -0.39 -0.88 16 13 C -0.18 -1.45 10.11 -39.44 -0.40 -1.85 16 14 C 0.10 0.92 11.18 -17.55 -0.20 0.73 16 15 N -0.49 -5.57 10.36 -13.25 -0.14 -5.71 16 16 C 0.12 1.30 10.86 -17.55 -0.19 1.11 16 17 C 0.09 1.40 5.84 -3.36 -0.02 1.38 16 18 C 0.15 2.83 3.24 -67.26 -0.22 2.61 16 19 H 0.03 0.62 7.38 -51.93 -0.38 0.24 16 20 C -0.14 -2.21 7.94 37.16 0.29 -1.91 16 21 N -0.58 -13.06 2.68 -156.76 -0.42 -13.48 16 22 C -0.25 -6.27 8.55 -15.06 -0.13 -6.40 16 23 H 0.07 1.70 6.25 -52.49 -0.33 1.37 16 24 C 0.01 0.13 4.92 -17.43 -0.09 0.04 16 25 N -0.89 -24.17 10.13 55.49 0.56 -23.61 16 26 Si 0.90 20.58 29.59 -169.99 -5.03 15.55 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.89 7.16 -51.93 -0.37 1.52 16 32 H 0.02 0.46 7.00 -51.93 -0.36 0.09 16 33 H 0.08 1.67 6.97 -51.93 -0.36 1.30 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.08 0.78 7.90 -51.93 -0.41 0.37 16 36 H 0.08 0.86 7.73 -51.93 -0.40 0.46 16 37 H 0.06 0.48 8.10 -51.92 -0.42 0.06 16 38 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 39 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 41 H 0.16 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.16 1.38 8.06 -52.48 -0.42 0.95 16 43 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 44 H 0.07 0.79 5.91 -51.93 -0.31 0.48 16 45 H 0.06 0.91 7.47 -51.93 -0.39 0.52 16 46 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.07 1.23 7.58 -51.93 -0.39 0.84 16 48 H 0.25 6.77 8.32 -40.82 -0.34 6.43 16 LS Contribution 383.05 15.07 5.77 5.77 Total: -1.00 -32.16 383.05 -9.30 -41.46 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.38 Total: 1.63 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -1.45 Total: 6.66 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.44 Total: -53.70 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.77 Total: -17.38 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.16 -9.30 -41.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880454917.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.684 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds