Wall clock time and date at job start Tue Mar 31 2020 17:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.60547 * 2 1 4 4 C 1.53374 * 109.61010 * 120.33911 * 2 1 3 5 5 N 1.46959 * 108.63580 * 70.31925 * 4 2 1 6 6 C 1.34777 * 120.59530 * 235.20305 * 5 4 2 7 7 O 1.21276 * 120.00194 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99868 * 180.02562 * 6 5 4 9 9 O 1.42899 * 109.47154 * 180.02562 * 8 6 5 10 10 C 1.42900 * 114.00327 * 180.02562 * 9 8 6 11 11 C 1.50694 * 109.47500 * 179.97438 * 10 9 8 12 12 C 1.38669 * 120.41833 * 89.99738 * 11 10 9 13 13 C 1.38629 * 118.42181 * 180.02562 * 12 11 10 14 14 C 1.38222 * 119.16037 * 0.02562 * 13 12 11 15 15 N 1.31857 * 120.76396 * 359.97438 * 14 13 12 16 16 C 1.31885 * 121.72300 * 359.70478 * 15 14 13 17 17 C 1.46971 * 118.81137 * 55.47905 * 5 4 2 18 18 C 1.53809 * 108.39742 * 304.48505 * 17 5 4 19 19 H 1.09006 * 109.88348 * 289.76111 * 18 17 5 20 20 C 1.52998 * 109.53721 * 169.30063 * 18 17 5 21 21 N 1.46963 * 109.60971 * 239.48652 * 2 1 3 22 22 C 1.36934 * 120.59360 * 115.46137 * 21 2 1 23 23 H 1.08002 * 119.99622 * 150.95968 * 22 21 2 24 24 C 1.38806 * 119.99938 * 330.95742 * 22 21 2 25 25 N 1.31615 * 120.00243 * 343.14450 * 24 22 21 26 26 Si 1.86809 * 119.99740 * 163.14779 * 24 22 21 27 27 H 1.48501 * 109.46979 * 60.00284 * 26 24 22 28 28 H 1.48507 * 109.46547 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47201 * 299.99666 * 26 24 22 30 30 H 1.08999 * 109.46915 * 299.66055 * 1 2 3 31 31 H 1.08996 * 109.47125 * 59.66166 * 1 2 3 32 32 H 1.08999 * 109.46782 * 179.66426 * 1 2 3 33 33 H 1.09003 * 109.60688 * 310.57482 * 4 2 1 34 34 H 1.08996 * 109.60812 * 190.06741 * 4 2 1 35 35 H 1.09003 * 109.47242 * 59.99821 * 8 6 5 36 36 H 1.09005 * 109.47100 * 300.00142 * 8 6 5 37 37 H 1.09009 * 109.46941 * 299.99928 * 10 9 8 38 38 H 1.09001 * 109.47341 * 59.99411 * 10 9 8 39 39 H 1.08001 * 120.79392 * 0.03048 * 12 11 10 40 40 H 1.08004 * 120.42352 * 180.02562 * 13 12 11 41 41 H 1.08003 * 119.62244 * 179.97438 * 14 13 12 42 42 H 1.08010 * 119.61713 * 180.31401 * 16 15 14 43 43 H 1.08999 * 109.60777 * 64.26567 * 17 5 4 44 44 H 1.08995 * 109.61014 * 184.77612 * 17 5 4 45 45 H 1.09001 * 109.47147 * 302.53690 * 20 18 17 46 46 H 1.09005 * 109.47058 * 62.53050 * 20 18 17 47 47 H 1.08991 * 109.47717 * 182.53293 * 20 18 17 48 48 H 0.96999 * 120.00199 * 175.69674 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0448 -0.7298 1.2469 5 7 1.7606 -2.1644 1.1022 6 6 1.0607 -2.8237 2.0466 7 8 0.6587 -2.2329 3.0265 8 6 0.7775 -4.2950 1.8849 9 8 0.0256 -4.7615 3.0070 10 6 -0.2971 -6.1525 2.9527 11 6 -1.0854 -6.5336 4.1791 12 6 -2.4697 -6.4528 4.1772 13 6 -3.1533 -6.8131 5.3281 14 6 -2.4374 -7.2375 6.4317 15 7 -1.1208 -7.3018 6.3976 16 6 -0.4382 -6.9730 5.3182 17 6 2.2587 -2.8686 -0.0877 18 6 1.7392 -2.1376 -1.3373 19 1 0.6643 -2.2896 -1.4356 20 6 2.4499 -2.6790 -2.5793 21 7 2.0233 -0.7029 -1.1927 22 6 2.7345 -0.0330 -2.1521 23 1 3.4688 -0.5581 -2.7450 24 6 2.5117 1.3207 -2.3626 25 7 1.4182 1.8877 -1.8987 26 14 3.7638 2.3380 -3.3045 27 1 3.9233 1.7836 -4.6729 28 1 3.2938 3.7440 -3.3922 29 1 5.0690 2.2950 -2.5976 30 1 -0.3633 0.5086 0.8930 31 1 -0.3633 0.5191 -0.8869 32 1 -0.3633 -1.0277 -0.0060 33 1 1.5384 -0.3439 2.1317 34 1 3.1199 -0.5775 1.3421 35 1 1.7185 -4.8417 1.8248 36 1 0.2046 -4.4565 0.9716 37 1 -0.8917 -6.3530 2.0613 38 1 0.6219 -6.7376 2.9155 39 1 -3.0027 -6.1172 3.2999 40 1 -4.2316 -6.7629 5.3621 41 1 -2.9624 -7.5196 7.3324 42 1 0.6396 -7.0434 5.3262 43 1 3.3487 -2.8652 -0.0853 44 1 1.8937 -3.8956 -0.0845 45 1 3.5269 -2.5568 -2.4639 46 1 2.2153 -3.7367 -2.7001 47 1 2.1141 -2.1297 -3.4587 48 1 1.2915 2.8449 -1.9910 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880454917.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:25 Heat of formation + Delta-G solvation = -26.022526 kcal Electronic energy + Delta-G solvation = -29005.786976 eV Core-core repulsion = 25061.349393 eV Total energy + Delta-G solvation = -3944.437582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.30046 -41.04805 -39.20875 -38.26593 -35.68612 -34.35316 -33.91174 -33.21399 -32.67948 -29.91507 -29.53054 -27.71494 -27.24987 -26.29279 -25.33092 -24.53114 -22.97439 -22.53443 -21.31697 -20.10827 -18.62413 -18.01754 -17.78595 -17.66585 -17.61125 -16.98238 -16.82586 -16.54649 -16.12515 -15.76915 -15.69561 -15.26561 -15.07554 -14.81072 -14.72176 -14.34093 -14.21530 -13.98203 -13.62121 -13.51619 -13.32285 -13.10991 -12.96874 -12.83185 -12.74280 -12.46533 -12.33289 -12.29732 -12.24669 -11.97719 -11.76040 -11.51158 -11.37460 -10.84929 -10.76665 -10.67120 -10.44429 -10.40239 -10.03460 -9.71827 -8.53315 -7.75365 -5.25107 0.05645 0.31986 1.50420 1.53522 1.58243 1.61504 1.81739 2.56361 2.69023 3.12326 3.36397 3.50607 3.55196 3.61803 3.88591 3.91833 4.06442 4.08278 4.12668 4.16939 4.27707 4.29339 4.37554 4.44896 4.50656 4.51202 4.63540 4.68772 4.71750 4.73311 4.81131 4.85000 4.92701 4.97168 5.10319 5.16417 5.18861 5.29674 5.33217 5.46106 5.60877 5.73523 5.74142 5.74950 5.84472 6.06597 6.46943 6.54043 6.98934 7.20161 7.22846 7.92494 8.44766 9.26311 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028950 B = 0.002310 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.949696 B =12119.466927 C =12429.892183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.182 3.818 3 H 0.070 0.930 4 C 0.106 3.894 5 N -0.595 5.595 6 C 0.502 3.498 7 O -0.584 6.584 8 C 0.053 3.947 9 O -0.392 6.392 10 C 0.103 3.897 11 C -0.153 4.153 12 C -0.065 4.065 13 C -0.175 4.175 14 C 0.089 3.911 15 N -0.518 5.518 16 C 0.103 3.897 17 C 0.098 3.902 18 C 0.144 3.856 19 H 0.021 0.979 20 C -0.128 4.128 21 N -0.595 5.595 22 C -0.246 4.246 23 H 0.080 0.920 24 C -0.050 4.050 25 N -0.925 5.925 26 Si 0.954 3.046 27 H -0.277 1.277 28 H -0.304 1.304 29 H -0.282 1.282 30 H 0.028 0.972 31 H 0.045 0.955 32 H 0.027 0.973 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.152 0.848 40 H 0.165 0.835 41 H 0.179 0.821 42 H 0.165 0.835 43 H 0.078 0.922 44 H 0.119 0.881 45 H 0.055 0.945 46 H 0.084 0.916 47 H 0.040 0.960 48 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.075 -21.522 7.046 23.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.075 3.925 3 H 0.088 0.912 4 C -0.018 4.018 5 N -0.328 5.328 6 C 0.291 3.709 7 O -0.464 6.464 8 C -0.026 4.026 9 O -0.312 6.312 10 C 0.027 3.973 11 C -0.155 4.155 12 C -0.091 4.091 13 C -0.194 4.194 14 C -0.068 4.068 15 N -0.227 5.227 16 C -0.054 4.054 17 C -0.025 4.025 18 C 0.038 3.962 19 H 0.039 0.961 20 C -0.186 4.186 21 N -0.318 5.318 22 C -0.376 4.376 23 H 0.097 0.903 24 C -0.245 4.245 25 N -0.571 5.571 26 Si 0.784 3.216 27 H -0.203 1.203 28 H -0.231 1.231 29 H -0.209 1.209 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.134 0.866 36 H 0.124 0.876 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.169 0.831 40 H 0.182 0.818 41 H 0.196 0.804 42 H 0.182 0.818 43 H 0.096 0.904 44 H 0.137 0.863 45 H 0.075 0.925 46 H 0.103 0.897 47 H 0.059 0.941 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.951 -21.250 8.362 23.175 hybrid contribution -0.017 1.683 -1.341 2.152 sum -3.968 -19.567 7.021 21.164 Atomic orbital electron populations 1.21759 0.98390 0.98274 0.99523 1.20513 0.91985 0.95797 0.84247 0.91224 1.22099 0.99720 0.80741 0.99260 1.48017 1.53491 1.09728 1.21586 1.21021 0.77494 0.90298 0.82040 1.90664 1.53252 1.70451 1.32047 1.22325 0.99028 0.90276 0.90934 1.88052 1.74287 1.25526 1.43317 1.21472 0.99374 0.81306 0.95187 1.20792 0.95223 1.02089 0.97429 1.21911 0.93653 0.94005 0.99544 1.22501 1.03097 1.00177 0.93619 1.23322 0.89640 0.94454 0.99335 1.67733 1.10370 1.16253 1.28371 1.22960 1.01076 0.93647 0.87669 1.22652 0.99908 0.96406 0.83561 1.21139 0.96372 0.84468 0.94238 0.96112 1.21701 1.00261 1.00420 0.96183 1.44350 1.63106 1.04703 1.19630 1.19446 1.12867 0.92414 1.12842 0.90280 1.25691 0.97703 1.00053 1.01077 1.70185 1.25086 1.09781 1.52054 0.85547 0.79432 0.77548 0.79057 1.20327 1.23119 1.20862 0.95304 0.93615 0.95390 0.91416 0.92009 0.86642 0.87554 0.89755 0.89435 0.83068 0.81786 0.80359 0.81785 0.90400 0.86345 0.92545 0.89690 0.94094 0.94657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.96 71.98 0.64 -4.89 16 2 C 0.18 8.34 2.34 45.03 0.11 8.44 16 3 H 0.07 3.71 6.04 -2.39 -0.01 3.70 16 4 C 0.11 4.22 5.96 86.42 0.52 4.74 16 5 N -0.60 -19.72 2.60 -817.17 -2.12 -21.85 16 6 C 0.50 16.68 7.77 87.66 0.68 17.37 16 7 O -0.58 -25.31 15.90 16.02 0.25 -25.05 16 8 C 0.05 1.14 4.76 71.24 0.34 1.48 16 9 O -0.39 -9.88 9.86 -129.94 -1.28 -11.16 16 10 C 0.10 1.62 6.09 71.23 0.43 2.05 16 11 C -0.15 -2.88 5.53 -19.78 -0.11 -2.99 16 12 C -0.07 -1.09 9.86 22.47 0.22 -0.86 16 13 C -0.17 -2.54 10.11 22.36 0.23 -2.31 16 14 C 0.09 1.51 11.18 84.69 0.95 2.45 16 15 N -0.52 -11.47 10.36 -195.84 -2.03 -13.50 16 16 C 0.10 2.11 10.86 84.67 0.92 3.03 16 17 C 0.10 2.60 5.84 86.56 0.51 3.10 16 18 C 0.14 4.94 3.24 45.17 0.15 5.09 16 19 H 0.02 0.78 7.38 -2.38 -0.02 0.76 16 20 C -0.13 -3.72 7.94 71.98 0.57 -3.15 16 21 N -0.59 -26.56 2.68 -649.87 -1.74 -28.30 16 22 C -0.25 -12.11 8.55 84.03 0.72 -11.39 16 23 H 0.08 3.71 6.25 -2.91 -0.02 3.69 16 24 C -0.05 -2.61 4.92 84.86 0.42 -2.19 16 25 N -0.92 -51.93 10.13 21.65 0.22 -51.72 16 26 Si 0.95 43.05 29.59 68.60 2.03 45.08 16 27 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 28 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 29 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.04 2.36 7.16 -2.39 -0.02 2.34 16 32 H 0.03 1.20 7.00 -2.39 -0.02 1.18 16 33 H 0.07 2.86 6.97 -2.39 -0.02 2.84 16 34 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.12 1.62 7.90 -2.39 -0.02 1.60 16 36 H 0.11 1.72 7.73 -2.38 -0.02 1.70 16 37 H 0.08 0.94 8.10 -2.38 -0.02 0.92 16 38 H 0.09 0.93 8.09 -2.39 -0.02 0.91 16 39 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 41 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 42 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 43 H 0.08 2.00 8.12 -2.39 -0.02 1.98 16 44 H 0.12 1.98 5.91 -2.39 -0.01 1.97 16 45 H 0.06 1.64 7.47 -2.39 -0.02 1.62 16 46 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 47 H 0.04 1.40 7.58 -2.39 -0.02 1.38 16 48 H 0.24 13.65 8.32 -92.71 -0.77 12.88 16 Total: -1.00 -74.07 383.05 3.56 -70.51 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.95 Total: 16.02 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: 7.28 Total: 19.96 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -5.68 Total: -115.36 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -1.03 Total: -36.21 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -74.07 3.56 -70.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880454917.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.488 kcal (2) G-P(sol) polarization free energy of solvation -74.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds