Wall clock time and date at job start Tue Mar 31 2020 17:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.60842 * 2 1 4 4 C 1.53377 * 109.60837 * 239.48855 * 2 1 3 5 5 N 1.46956 * 108.63631 * 190.83079 * 4 2 1 6 6 C 1.34774 * 120.59785 * 235.20814 * 5 4 2 7 7 O 1.21280 * 120.00519 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.99689 * 0.02562 * 6 5 4 9 9 O 1.42901 * 109.47195 * 180.02562 * 8 6 5 10 10 C 1.42898 * 114.00015 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.47207 * 179.97438 * 10 9 8 12 12 C 1.38673 * 120.41485 * 89.99824 * 11 10 9 13 13 C 1.38629 * 118.41842 * 179.97438 * 12 11 10 14 14 C 1.38228 * 119.16147 * 0.02562 * 13 12 11 15 15 N 1.31852 * 120.76357 * 359.97438 * 14 13 12 16 16 C 1.31889 * 121.72649 * 359.70986 * 15 14 13 17 17 C 1.46972 * 118.81252 * 55.22567 * 5 4 2 18 18 C 1.53367 * 108.63357 * 304.77594 * 17 5 4 19 19 H 1.09004 * 109.74916 * 169.24916 * 18 17 5 20 20 C 1.53003 * 109.60929 * 289.67631 * 18 17 5 21 21 N 1.46965 * 109.61000 * 120.34757 * 2 1 3 22 22 C 1.36940 * 120.59605 * 354.94172 * 21 2 1 23 23 H 1.08003 * 119.99774 * 28.69966 * 22 21 2 24 24 C 1.38813 * 120.00225 * 208.69566 * 22 21 2 25 25 N 1.31621 * 119.99584 * 17.33623 * 24 22 21 26 26 Si 1.86794 * 120.00130 * 197.33674 * 24 22 21 27 27 H 1.48499 * 109.47083 * 89.99910 * 26 24 22 28 28 H 1.48496 * 109.46899 * 210.00133 * 26 24 22 29 29 H 1.48504 * 109.46833 * 329.99939 * 26 24 22 30 30 H 1.09004 * 109.47007 * 299.65691 * 1 2 3 31 31 H 1.09000 * 109.47594 * 59.65392 * 1 2 3 32 32 H 1.09001 * 109.47343 * 179.66172 * 1 2 3 33 33 H 1.09000 * 109.60839 * 310.57740 * 4 2 1 34 34 H 1.08999 * 109.60992 * 71.08405 * 4 2 1 35 35 H 1.09004 * 109.47170 * 300.00200 * 8 6 5 36 36 H 1.08998 * 109.47152 * 59.99977 * 8 6 5 37 37 H 1.08999 * 109.47232 * 300.00101 * 10 9 8 38 38 H 1.09000 * 109.46911 * 59.99888 * 10 9 8 39 39 H 1.07998 * 120.79356 * 359.97438 * 12 11 10 40 40 H 1.07998 * 120.41910 * 180.02562 * 13 12 11 41 41 H 1.07997 * 119.61737 * 179.97438 * 14 13 12 42 42 H 1.07991 * 119.61939 * 180.30916 * 16 15 14 43 43 H 1.09001 * 109.60916 * 185.02730 * 17 5 4 44 44 H 1.08999 * 109.60991 * 64.51802 * 17 5 4 45 45 H 1.09006 * 109.46751 * 179.14827 * 20 18 17 46 46 H 1.08994 * 109.47179 * 299.14820 * 20 18 17 47 47 H 1.09000 * 109.46959 * 59.15143 * 20 18 17 48 48 H 0.97000 * 119.99898 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0267 0.0000 4 6 2.0447 -0.7336 -1.2448 5 7 3.4907 -0.9506 -1.0976 6 6 4.3491 -0.5163 -2.0415 7 8 5.5404 -0.7016 -1.9093 8 6 3.8287 0.1995 -3.2613 9 8 4.9236 0.5570 -4.1072 10 6 4.5370 1.2441 -5.2990 11 6 5.7639 1.5711 -6.1107 12 6 6.2366 0.6774 -7.0598 13 6 7.3682 1.0205 -7.7833 14 6 7.9837 2.2332 -7.5360 15 7 7.5062 3.0587 -6.6255 16 6 6.4285 2.7680 -5.9229 17 6 3.9840 -1.6499 0.0972 18 6 3.4693 -0.9164 1.3419 19 1 3.6603 -1.5191 2.2299 20 6 4.1801 0.4320 1.4739 21 7 2.0232 -0.6995 1.1947 22 6 1.1511 -1.1406 2.1539 23 1 0.1410 -1.4100 1.8825 24 6 1.5652 -1.2416 3.4750 25 7 2.6489 -0.6107 3.8749 26 14 0.5846 -2.2728 4.6850 27 1 1.0979 -3.6662 4.6776 28 1 0.7233 -1.7013 6.0485 29 1 -0.8472 -2.2705 4.2906 30 1 -0.3633 0.5085 0.8931 31 1 -0.3634 0.5192 -0.8868 32 1 -0.3634 -1.0276 -0.0061 33 1 1.5383 -1.6942 -1.3388 34 1 1.8539 -0.1284 -2.1310 35 1 3.1490 -0.4565 -3.8052 36 1 3.2968 1.1001 -2.9547 37 1 3.8719 0.6096 -5.8848 38 1 4.0199 2.1666 -5.0350 39 1 5.7351 -0.2636 -7.2312 40 1 7.7639 0.3488 -8.5307 41 1 8.8660 2.5078 -8.0951 42 1 6.0640 3.4714 -5.1890 43 1 5.0740 -1.6500 0.0971 44 1 3.6157 -2.6758 0.0987 45 1 3.8018 0.9578 2.3505 46 1 5.2522 0.2684 1.5829 47 1 3.9926 1.0304 0.5823 48 1 2.9382 -0.6809 4.7981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880454919.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:31 Heat of formation + Delta-G solvation = -25.840718 kcal Electronic energy + Delta-G solvation = -29006.693731 eV Core-core repulsion = 25062.264032 eV Total energy + Delta-G solvation = -3944.429699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.30424 -41.04957 -39.21553 -38.26823 -35.68650 -34.36784 -33.91336 -33.21527 -32.67590 -29.91909 -29.53285 -27.71963 -27.25406 -26.29483 -25.33272 -24.53111 -22.97292 -22.53467 -21.32389 -20.10727 -18.62649 -18.00922 -17.77724 -17.66859 -17.62554 -16.97433 -16.84191 -16.54237 -16.14975 -15.76677 -15.66926 -15.26793 -15.08271 -14.81566 -14.72298 -14.37470 -14.18005 -13.97653 -13.62708 -13.51880 -13.33552 -13.10166 -12.95644 -12.83174 -12.80247 -12.46017 -12.31476 -12.28606 -12.24847 -11.95825 -11.75923 -11.50370 -11.37559 -10.84742 -10.76752 -10.67289 -10.45763 -10.39566 -10.03513 -9.72336 -8.51634 -7.78015 -5.23779 0.05771 0.32580 1.49522 1.52790 1.59030 1.61145 1.81826 2.55389 2.69056 3.12302 3.36194 3.50567 3.54770 3.61757 3.88742 3.91851 4.06869 4.08648 4.12662 4.17615 4.27431 4.29620 4.37375 4.45227 4.51167 4.51392 4.63220 4.68848 4.72540 4.73172 4.80801 4.84816 4.92465 4.96930 5.10120 5.16506 5.18949 5.29532 5.33175 5.46158 5.60780 5.73115 5.74875 5.75465 5.84275 6.06592 6.47260 6.54017 6.99471 7.20041 7.22630 7.92499 8.44755 9.26486 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028852 B = 0.002312 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.234569 B =12109.377747 C =12417.023125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.144 3.856 3 H 0.020 0.980 4 C 0.098 3.902 5 N -0.595 5.595 6 C 0.502 3.498 7 O -0.584 6.584 8 C 0.053 3.947 9 O -0.392 6.392 10 C 0.103 3.897 11 C -0.153 4.153 12 C -0.063 4.063 13 C -0.173 4.173 14 C 0.088 3.912 15 N -0.520 5.520 16 C 0.100 3.900 17 C 0.106 3.894 18 C 0.182 3.818 19 H 0.071 0.929 20 C -0.120 4.120 21 N -0.595 5.595 22 C -0.246 4.246 23 H 0.081 0.919 24 C -0.050 4.050 25 N -0.927 5.927 26 Si 0.956 3.044 27 H -0.292 1.292 28 H -0.305 1.305 29 H -0.267 1.267 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.156 0.844 40 H 0.167 0.833 41 H 0.179 0.821 42 H 0.160 0.840 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.044 0.956 46 H 0.028 0.972 47 H 0.026 0.974 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.528 2.467 -24.383 24.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.037 3.963 3 H 0.037 0.963 4 C -0.025 4.025 5 N -0.328 5.328 6 C 0.292 3.708 7 O -0.464 6.464 8 C -0.026 4.026 9 O -0.312 6.312 10 C 0.027 3.973 11 C -0.155 4.155 12 C -0.088 4.088 13 C -0.193 4.193 14 C -0.069 4.069 15 N -0.229 5.229 16 C -0.056 4.056 17 C -0.018 4.018 18 C 0.074 3.926 19 H 0.089 0.911 20 C -0.179 4.179 21 N -0.318 5.318 22 C -0.376 4.376 23 H 0.098 0.902 24 C -0.246 4.246 25 N -0.573 5.573 26 Si 0.787 3.213 27 H -0.220 1.220 28 H -0.232 1.232 29 H -0.192 1.192 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.123 0.877 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.174 0.826 40 H 0.184 0.816 41 H 0.196 0.804 42 H 0.178 0.822 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.063 0.937 46 H 0.047 0.953 47 H 0.046 0.954 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.731 3.140 -23.981 24.197 hybrid contribution -0.584 -1.107 1.454 1.919 sum 0.147 2.033 -22.527 22.619 Atomic orbital electron populations 1.21695 0.93221 1.01956 1.01631 1.21059 0.94970 0.93370 0.86886 0.96259 1.22556 0.78291 1.01968 0.99675 1.48012 1.08165 1.56468 1.20158 1.21022 0.85932 0.79008 0.84886 1.90665 1.17869 1.58730 1.79150 1.22325 0.89733 1.00947 0.89555 1.88052 1.32076 1.77538 1.33517 1.21473 0.93314 0.97871 0.84680 1.20792 0.99683 0.96311 0.98734 1.21917 0.95166 0.98873 0.92893 1.22514 0.96522 0.98522 1.01722 1.23335 0.99284 0.90604 0.93644 1.67722 1.12512 1.35268 1.07376 1.22931 0.90588 0.95727 0.96369 1.22092 0.98759 0.95461 0.85478 1.20530 0.83496 0.94329 0.94245 0.91137 1.21761 0.97496 0.99340 0.99340 1.44372 1.01558 1.65273 1.20609 1.19485 0.95913 1.35434 0.86757 0.90179 1.25716 0.99317 1.01005 0.98561 1.70164 1.27372 1.43998 1.15742 0.85426 0.79131 0.78493 0.78296 1.21960 1.23223 1.19193 0.94125 0.89650 0.92537 0.90323 0.86363 0.86530 0.87657 0.89221 0.89970 0.82633 0.81578 0.80404 0.82241 0.91434 0.91923 0.93682 0.95325 0.95445 0.94623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 7.94 71.98 0.57 -3.14 16 2 C 0.14 4.94 3.23 45.03 0.15 5.08 16 3 H 0.02 0.73 7.41 -2.39 -0.02 0.71 16 4 C 0.10 2.60 5.82 86.42 0.50 3.11 16 5 N -0.60 -19.72 2.59 -818.01 -2.12 -21.84 16 6 C 0.50 16.70 7.77 87.66 0.68 17.38 16 7 O -0.58 -25.32 15.90 16.01 0.25 -25.07 16 8 C 0.05 1.14 4.76 71.24 0.34 1.48 16 9 O -0.39 -9.88 9.86 -129.94 -1.28 -11.16 16 10 C 0.10 1.62 6.09 71.24 0.43 2.05 16 11 C -0.15 -2.88 5.53 -19.77 -0.11 -2.99 16 12 C -0.06 -0.98 9.86 22.47 0.22 -0.76 16 13 C -0.17 -2.41 10.11 22.36 0.23 -2.18 16 14 C 0.09 1.49 11.18 84.69 0.95 2.44 16 15 N -0.52 -11.87 10.36 -195.85 -2.03 -13.90 16 16 C 0.10 2.15 10.86 84.67 0.92 3.07 16 17 C 0.11 4.24 5.97 86.41 0.52 4.75 16 18 C 0.18 8.35 2.35 45.03 0.11 8.46 16 19 H 0.07 3.78 6.01 -2.38 -0.01 3.76 16 20 C -0.12 -5.59 8.94 71.98 0.64 -4.95 16 21 N -0.59 -26.65 2.69 -650.69 -1.75 -28.40 16 22 C -0.25 -12.13 8.58 84.03 0.72 -11.41 16 23 H 0.08 3.77 6.22 -2.91 -0.02 3.75 16 24 C -0.05 -2.65 4.90 84.86 0.42 -2.24 16 25 N -0.93 -52.25 10.16 21.65 0.22 -52.03 16 26 Si 0.96 43.17 29.59 68.60 2.03 45.20 16 27 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 28 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 29 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 30 H 0.04 1.39 7.67 -2.38 -0.02 1.37 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.65 7.38 -2.39 -0.02 1.63 16 33 H 0.08 2.00 8.12 -2.39 -0.02 1.98 16 34 H 0.12 1.98 5.91 -2.39 -0.01 1.97 16 35 H 0.12 1.59 7.91 -2.39 -0.02 1.57 16 36 H 0.11 1.74 7.72 -2.39 -0.02 1.72 16 37 H 0.09 0.89 8.10 -2.39 -0.02 0.88 16 38 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 39 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 42 H 0.16 3.00 8.06 -2.92 -0.02 2.98 16 43 H 0.07 2.86 6.97 -2.39 -0.02 2.84 16 44 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.04 2.34 7.19 -2.38 -0.02 2.33 16 46 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 47 H 0.03 1.19 7.02 -2.39 -0.02 1.17 16 48 H 0.24 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -74.67 383.04 3.56 -71.12 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.95 Total: 15.92 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 7.28 Total: 20.16 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -5.68 Total: -116.17 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -1.03 Total: -36.23 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -74.67 3.56 -71.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880454919.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.275 kcal (2) G-P(sol) polarization free energy of solvation -74.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds