Wall clock time and date at job start Tue Mar 31 2020 17:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00006 * 2 1 4 4 H 1.08999 * 112.91000 * 21.74228 * 3 2 1 5 5 C 1.53781 * 113.61301 * 250.49679 * 3 2 1 6 6 H 1.09003 * 113.61970 * 156.33605 * 5 3 2 7 7 C 1.52995 * 113.61548 * 25.42999 * 5 3 2 8 8 C 1.53783 * 87.08226 * 270.88567 * 5 3 2 9 9 H 1.08999 * 113.61527 * 219.94233 * 8 5 3 10 10 N 1.46497 * 113.61949 * 89.11198 * 8 5 3 11 11 C 1.34776 * 119.99602 * 104.50330 * 10 8 5 12 12 O 1.21568 * 120.00414 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99694 * 180.02562 * 11 10 8 14 14 C 1.39245 * 120.00188 * 174.86120 * 13 11 10 15 15 C 1.39688 * 119.57833 * 185.40553 * 14 13 11 16 16 C 1.38648 * 119.49513 * 179.70405 * 15 14 13 17 17 C 1.38354 * 118.67035 * 0.55898 * 16 15 14 18 18 C 1.40579 * 119.12967 * 359.72773 * 17 16 15 19 19 C 1.41341 * 119.78399 * 180.02562 * 18 17 16 20 20 H 1.07994 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.40027 * 119.99459 * 179.97438 * 19 18 17 22 22 N 1.30738 * 120.00118 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99516 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47184 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46734 * 120.00293 * 23 21 19 26 26 H 1.48493 * 109.47212 * 240.00151 * 23 21 19 27 27 N 1.31909 * 119.57472 * 5.67673 * 14 13 11 28 28 C 1.53779 * 113.61440 * 153.00079 * 3 2 1 29 29 C 1.53007 * 113.61470 * 334.56298 * 28 3 2 30 30 C 1.53003 * 113.61447 * 203.66378 * 28 3 2 31 31 H 1.08995 * 109.47507 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46806 * 300.00403 * 1 2 3 33 33 H 1.08998 * 109.47147 * 59.99653 * 1 2 3 34 34 H 1.08998 * 109.47476 * 322.50760 * 7 5 3 35 35 H 1.09003 * 109.47433 * 82.50395 * 7 5 3 36 36 H 1.09002 * 109.47365 * 202.50354 * 7 5 3 37 37 H 0.96995 * 120.00251 * 284.51325 * 10 8 5 38 38 H 0.97005 * 120.00106 * 354.86232 * 13 11 10 39 39 H 1.07998 * 120.24786 * 0.02562 * 15 14 13 40 40 H 1.07995 * 120.66720 * 180.26349 * 16 15 14 41 41 H 1.08000 * 120.43688 * 179.70516 * 17 16 15 42 42 H 0.97002 * 119.99818 * 179.97438 * 22 21 19 43 43 H 1.08998 * 109.47070 * 157.50182 * 29 28 3 44 44 H 1.08994 * 109.46852 * 277.49789 * 29 28 3 45 45 H 1.09003 * 109.46680 * 37.49842 * 29 28 3 46 46 H 1.09003 * 109.47016 * 322.49811 * 30 28 3 47 47 H 1.08997 * 109.47264 * 82.50001 * 30 28 3 48 48 H 1.09000 * 109.46900 * 202.50026 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3309 2.0724 0.3719 5 6 2.6905 1.6768 -1.3282 6 1 2.7677 2.7514 -1.4939 7 6 2.1262 0.9270 -2.5365 8 6 3.9724 1.0480 -0.7569 9 1 4.8771 1.6063 -0.9970 10 7 4.0975 -0.3850 -1.0348 11 6 4.9539 -0.8153 -1.9823 12 8 5.6229 -0.0144 -2.6060 13 7 5.0686 -2.1335 -2.2384 14 6 5.8719 -2.5715 -3.2880 15 6 5.8962 -3.9287 -3.6178 16 6 6.6920 -4.3621 -4.6672 17 6 7.4518 -3.4309 -5.3526 18 6 7.3887 -2.0801 -4.9687 19 6 8.1586 -1.1171 -5.6597 20 1 8.7931 -1.4200 -6.4794 21 6 8.0987 0.2298 -5.2813 22 7 7.3310 0.5964 -4.2886 23 14 9.1169 1.5024 -6.1941 24 1 9.8959 0.8355 -7.2681 25 1 8.2160 2.5188 -6.7948 26 1 10.0476 2.1649 -5.2454 27 7 6.6043 -1.7003 -3.9548 28 6 3.4077 1.3575 0.6397 29 6 3.6559 0.2460 1.6614 30 6 3.7912 2.7434 1.1625 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8861 -0.0967 -2.2493 35 1 1.2230 1.4277 -2.8855 36 1 2.8672 0.9159 -3.3358 37 1 3.5639 -1.0240 -0.5371 38 1 4.5916 -2.7772 -1.6915 39 1 5.2957 -4.6342 -3.0628 40 1 6.7218 -5.4064 -4.9410 41 1 8.0853 -3.7379 -6.1716 42 1 7.2898 1.5293 -4.0262 43 1 4.7286 0.0872 1.7721 44 1 3.2302 0.5342 2.6224 45 1 3.1858 -0.6753 1.3173 46 1 3.4123 3.5060 0.4820 47 1 3.3578 2.8913 2.1516 48 1 4.8766 2.8201 1.2261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881149492.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:26 Heat of formation + Delta-G solvation = 12.680850 kcal Electronic energy + Delta-G solvation = -30293.754933 eV Core-core repulsion = 26350.995655 eV Total energy + Delta-G solvation = -3942.759278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.90084 -38.99508 -37.44373 -36.36183 -33.95450 -32.88000 -32.66900 -31.78582 -30.18800 -28.80952 -27.66532 -27.42188 -26.27640 -25.44668 -24.28950 -21.96050 -21.14265 -20.58506 -19.60081 -18.65911 -17.95055 -17.13622 -16.24465 -16.10332 -15.68775 -15.37616 -14.95998 -14.63353 -14.44978 -14.31456 -13.92477 -13.58986 -13.52730 -13.33847 -12.88800 -12.78395 -12.65913 -12.47820 -12.24808 -12.10057 -11.96520 -11.85210 -11.69800 -11.33031 -11.14904 -11.07674 -10.87200 -10.80976 -10.55296 -10.38962 -10.33123 -9.97611 -9.83019 -9.57966 -9.37495 -8.96239 -8.93014 -8.19815 -7.85915 -7.10587 -6.83361 -6.02174 -4.30463 2.91953 3.21110 3.22654 3.26123 3.27966 3.34079 3.58839 4.13535 4.29105 4.42442 4.53848 4.86859 4.87786 5.00263 5.05406 5.10939 5.15702 5.22104 5.30926 5.47777 5.48923 5.58378 5.62520 5.74915 5.80604 5.90962 5.93516 6.04890 6.12170 6.15920 6.19183 6.20573 6.35161 6.44176 6.57430 6.63837 6.74007 6.90329 6.93781 7.09904 7.26699 7.34900 7.51890 7.72037 7.88144 7.90414 8.27434 8.41006 8.80883 8.92237 9.15570 9.76893 10.37123 10.58440 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.003971 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.049996 B = 7050.158545 C = 8312.320788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.075 3.925 4 H 0.068 0.932 5 C -0.148 4.148 6 H 0.096 0.904 7 C -0.129 4.129 8 C 0.172 3.828 9 H 0.099 0.901 10 N -0.731 5.731 11 C 0.666 3.334 12 O -0.465 6.465 13 N -0.674 5.674 14 C 0.389 3.611 15 C -0.359 4.359 16 C -0.036 4.036 17 C -0.309 4.309 18 C 0.271 3.729 19 C -0.427 4.427 20 H 0.081 0.919 21 C 0.057 3.943 22 N -0.646 5.646 23 Si 0.892 3.108 24 H -0.263 1.263 25 H -0.276 1.276 26 H -0.276 1.276 27 N -0.469 5.469 28 C -0.096 4.096 29 C -0.128 4.128 30 C -0.124 4.124 31 H 0.084 0.916 32 H 0.038 0.962 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.039 0.961 36 H 0.061 0.939 37 H 0.389 0.611 38 H 0.393 0.607 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.270 0.730 43 H 0.057 0.943 44 H 0.050 0.950 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.933 3.684 12.341 18.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.279 6.279 3 C 0.017 3.983 4 H 0.086 0.914 5 C -0.168 4.168 6 H 0.114 0.886 7 C -0.186 4.186 8 C 0.064 3.936 9 H 0.117 0.883 10 N -0.389 5.389 11 C 0.364 3.636 12 O -0.329 6.329 13 N -0.322 5.322 14 C 0.149 3.851 15 C -0.385 4.385 16 C -0.060 4.060 17 C -0.332 4.332 18 C 0.146 3.854 19 C -0.457 4.457 20 H 0.099 0.901 21 C -0.172 4.172 22 N -0.264 5.264 23 Si 0.716 3.284 24 H -0.187 1.187 25 H -0.202 1.202 26 H -0.202 1.202 27 N -0.188 5.188 28 C -0.097 4.097 29 C -0.186 4.186 30 C -0.182 4.182 31 H 0.103 0.897 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.224 0.776 38 H 0.226 0.774 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.255 5.411 12.072 18.033 hybrid contribution -0.449 -0.796 -0.086 0.918 sum -12.703 4.615 11.986 18.065 Atomic orbital electron populations 1.22761 0.81223 1.02553 0.99755 1.87775 1.19274 1.26498 1.94313 1.23278 0.93775 0.84779 0.96517 0.91407 1.23537 0.97902 1.00222 0.95146 0.88552 1.21391 0.99679 1.00429 0.97088 1.21467 0.97617 0.82151 0.92327 0.88312 1.44847 1.45660 1.06467 1.41945 1.16399 0.81888 0.83478 0.81793 1.91367 1.42751 1.51596 1.47173 1.42563 1.49785 1.06215 1.33649 1.18351 0.90178 0.88839 0.87741 1.20444 1.15134 0.94047 1.08875 1.20530 0.94474 0.97044 0.93976 1.21614 1.09620 0.95172 1.06792 1.18400 0.89061 0.89730 0.88176 1.19589 1.21268 0.91229 1.13658 0.90072 1.26179 0.95953 0.99573 0.95526 1.70368 1.22777 1.16992 1.16279 0.86525 0.80372 0.81118 0.80343 1.18681 1.20171 1.20155 1.68712 1.09205 1.31782 1.09095 1.22474 0.94732 0.96900 0.95598 1.21498 1.01612 0.98215 0.97244 1.21532 1.02233 0.93790 1.00610 0.89749 0.94354 0.94061 0.91761 0.94197 0.91990 0.77599 0.77381 0.89258 0.88758 0.88713 0.91794 0.92417 0.93109 0.91517 0.92133 0.92223 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.86 101.05 1.10 1.37 16 2 O -0.36 -3.85 6.52 -35.23 -0.23 -4.08 16 3 C 0.07 0.78 3.62 -25.92 -0.09 0.69 16 4 H 0.07 0.62 7.85 -51.93 -0.41 0.21 16 5 C -0.15 -1.87 3.97 -89.81 -0.36 -2.23 16 6 H 0.10 1.13 7.65 -51.93 -0.40 0.73 16 7 C -0.13 -1.86 8.96 37.16 0.33 -1.53 16 8 C 0.17 2.47 3.60 -67.12 -0.24 2.23 16 9 H 0.10 1.68 7.49 -51.93 -0.39 1.29 16 10 N -0.73 -11.50 3.58 -57.88 -0.21 -11.71 16 11 C 0.67 14.01 8.50 -86.92 -0.74 13.27 16 12 O -0.46 -11.98 11.74 5.31 0.06 -11.92 16 13 N -0.67 -13.94 5.39 -15.79 -0.09 -14.02 16 14 C 0.39 9.79 7.43 -154.99 -1.15 8.64 16 15 C -0.36 -8.33 9.96 -38.89 -0.39 -8.72 16 16 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 17 C -0.31 -8.00 9.83 -38.66 -0.38 -8.38 16 18 C 0.27 7.82 6.55 -85.00 -0.56 7.27 16 19 C -0.43 -12.03 9.14 -37.73 -0.34 -12.38 16 20 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 21 C 0.06 1.54 5.50 -17.35 -0.10 1.44 16 22 N -0.65 -18.26 8.99 55.55 0.50 -17.76 16 23 Si 0.89 19.67 29.56 -169.99 -5.02 14.65 16 24 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 27 N -0.47 -13.50 5.74 -10.25 -0.06 -13.55 16 28 C -0.10 -1.03 1.34 -153.69 -0.21 -1.24 16 29 C -0.13 -1.34 8.43 37.16 0.31 -1.03 16 30 C -0.12 -1.12 9.07 37.16 0.34 -0.78 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.96 6.59 -51.93 -0.34 0.61 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.39 5.37 6.09 -40.82 -0.25 5.12 16 38 H 0.39 6.47 8.71 -40.82 -0.36 6.11 16 39 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 41 H 0.09 2.28 8.06 -52.49 -0.42 1.86 16 42 H 0.27 7.18 8.29 -40.82 -0.34 6.84 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.72 5.63 -51.93 -0.29 0.43 16 46 H 0.06 0.51 7.34 -51.93 -0.38 0.13 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -33.05 380.70 -9.61 -42.66 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -7.43 Total: 12.61 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.87 Total: -2.61 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.15 Total: -57.04 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.17 Total: -16.00 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.05 -9.61 -42.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881149492.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.341 kcal (2) G-P(sol) polarization free energy of solvation -33.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds