Wall clock time and date at job start Tue Mar 31 2020 17:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00006 * 2 1 4 4 H 1.08999 * 112.91000 * 21.74228 * 3 2 1 5 5 C 1.53781 * 113.61301 * 250.49679 * 3 2 1 6 6 H 1.09003 * 113.61970 * 156.33605 * 5 3 2 7 7 C 1.52995 * 113.61548 * 25.42999 * 5 3 2 8 8 C 1.53783 * 87.08226 * 270.88567 * 5 3 2 9 9 H 1.08999 * 113.61527 * 219.94233 * 8 5 3 10 10 N 1.46497 * 113.61949 * 89.11198 * 8 5 3 11 11 C 1.34776 * 119.99602 * 104.50330 * 10 8 5 12 12 O 1.21568 * 120.00414 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99694 * 180.02562 * 11 10 8 14 14 C 1.39245 * 120.00188 * 174.86120 * 13 11 10 15 15 C 1.39688 * 119.57833 * 185.40553 * 14 13 11 16 16 C 1.38648 * 119.49513 * 179.70405 * 15 14 13 17 17 C 1.38354 * 118.67035 * 0.55898 * 16 15 14 18 18 C 1.40579 * 119.12967 * 359.72773 * 17 16 15 19 19 C 1.41341 * 119.78399 * 180.02562 * 18 17 16 20 20 H 1.07994 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.40027 * 119.99459 * 179.97438 * 19 18 17 22 22 N 1.30738 * 120.00118 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99516 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47184 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46734 * 120.00293 * 23 21 19 26 26 H 1.48493 * 109.47212 * 240.00151 * 23 21 19 27 27 N 1.31909 * 119.57472 * 5.67673 * 14 13 11 28 28 C 1.53779 * 113.61440 * 153.00079 * 3 2 1 29 29 C 1.53007 * 113.61470 * 334.56298 * 28 3 2 30 30 C 1.53003 * 113.61447 * 203.66378 * 28 3 2 31 31 H 1.08995 * 109.47507 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46806 * 300.00403 * 1 2 3 33 33 H 1.08998 * 109.47147 * 59.99653 * 1 2 3 34 34 H 1.08998 * 109.47476 * 322.50760 * 7 5 3 35 35 H 1.09003 * 109.47433 * 82.50395 * 7 5 3 36 36 H 1.09002 * 109.47365 * 202.50354 * 7 5 3 37 37 H 0.96995 * 120.00251 * 284.51325 * 10 8 5 38 38 H 0.97005 * 120.00106 * 354.86232 * 13 11 10 39 39 H 1.07998 * 120.24786 * 0.02562 * 15 14 13 40 40 H 1.07995 * 120.66720 * 180.26349 * 16 15 14 41 41 H 1.08000 * 120.43688 * 179.70516 * 17 16 15 42 42 H 0.97002 * 119.99818 * 179.97438 * 22 21 19 43 43 H 1.08998 * 109.47070 * 157.50182 * 29 28 3 44 44 H 1.08994 * 109.46852 * 277.49789 * 29 28 3 45 45 H 1.09003 * 109.46680 * 37.49842 * 29 28 3 46 46 H 1.09003 * 109.47016 * 322.49811 * 30 28 3 47 47 H 1.08997 * 109.47264 * 82.50001 * 30 28 3 48 48 H 1.09000 * 109.46900 * 202.50026 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3309 2.0724 0.3719 5 6 2.6905 1.6768 -1.3282 6 1 2.7677 2.7514 -1.4939 7 6 2.1262 0.9270 -2.5365 8 6 3.9724 1.0480 -0.7569 9 1 4.8771 1.6063 -0.9970 10 7 4.0975 -0.3850 -1.0348 11 6 4.9539 -0.8153 -1.9823 12 8 5.6229 -0.0144 -2.6060 13 7 5.0686 -2.1335 -2.2384 14 6 5.8719 -2.5715 -3.2880 15 6 5.8962 -3.9287 -3.6178 16 6 6.6920 -4.3621 -4.6672 17 6 7.4518 -3.4309 -5.3526 18 6 7.3887 -2.0801 -4.9687 19 6 8.1586 -1.1171 -5.6597 20 1 8.7931 -1.4200 -6.4794 21 6 8.0987 0.2298 -5.2813 22 7 7.3310 0.5964 -4.2886 23 14 9.1169 1.5024 -6.1941 24 1 9.8959 0.8355 -7.2681 25 1 8.2160 2.5188 -6.7948 26 1 10.0476 2.1649 -5.2454 27 7 6.6043 -1.7003 -3.9548 28 6 3.4077 1.3575 0.6397 29 6 3.6559 0.2460 1.6614 30 6 3.7912 2.7434 1.1625 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8861 -0.0967 -2.2493 35 1 1.2230 1.4277 -2.8855 36 1 2.8672 0.9159 -3.3358 37 1 3.5639 -1.0240 -0.5371 38 1 4.5916 -2.7772 -1.6915 39 1 5.2957 -4.6342 -3.0628 40 1 6.7218 -5.4064 -4.9410 41 1 8.0853 -3.7379 -6.1716 42 1 7.2898 1.5293 -4.0262 43 1 4.7286 0.0872 1.7721 44 1 3.2302 0.5342 2.6224 45 1 3.1858 -0.6753 1.3173 46 1 3.4123 3.5060 0.4820 47 1 3.3578 2.8913 2.1516 48 1 4.8766 2.8201 1.2261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881149492.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:25 Heat of formation + Delta-G solvation = -7.139239 kcal Electronic energy + Delta-G solvation = -30294.614396 eV Core-core repulsion = 26350.995655 eV Total energy + Delta-G solvation = -3943.618742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.99214 -40.68258 -39.19642 -37.26837 -35.83408 -34.77929 -34.03228 -32.88970 -32.16121 -30.70758 -28.42155 -28.38393 -27.53673 -27.00218 -25.41969 -23.71474 -23.03003 -21.75620 -21.15596 -19.84599 -19.67129 -18.65759 -17.91260 -17.25033 -16.64633 -16.51784 -16.31774 -16.22663 -15.97428 -15.90497 -15.56430 -14.97113 -14.84335 -14.61480 -14.41735 -14.01940 -13.92015 -13.71303 -13.56014 -13.44384 -13.09337 -12.98195 -12.90582 -12.70665 -12.53015 -12.51242 -12.29669 -12.26638 -12.10182 -11.72466 -11.71435 -11.52921 -11.27673 -10.93901 -10.83239 -10.76191 -10.24682 -9.86506 -9.59309 -9.06396 -8.73994 -7.99109 -6.38605 0.99232 1.30937 1.39305 1.52385 1.54146 1.85555 2.27823 2.63002 2.72143 3.06949 3.33248 3.57542 3.66854 3.83456 4.05492 4.10961 4.27923 4.37958 4.39779 4.44211 4.58448 4.63703 4.67734 4.71712 4.75763 4.81547 4.84298 4.90454 4.93731 4.94730 4.98689 5.03902 5.07762 5.09048 5.15934 5.22207 5.30954 5.38975 5.46058 5.51167 5.70175 5.89026 5.92210 5.96003 6.09127 6.34790 6.39397 6.47362 6.85427 7.10737 7.35150 8.11502 8.42174 8.61468 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.003971 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.049996 B = 7050.158545 C = 8312.320788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.376 6.376 3 C 0.092 3.908 4 H 0.096 0.904 5 C -0.150 4.150 6 H 0.107 0.893 7 C -0.118 4.118 8 C 0.151 3.849 9 H 0.062 0.938 10 N -0.707 5.707 11 C 0.660 3.340 12 O -0.515 6.515 13 N -0.664 5.664 14 C 0.366 3.634 15 C -0.348 4.348 16 C -0.033 4.033 17 C -0.332 4.332 18 C 0.237 3.763 19 C -0.467 4.467 20 H 0.084 0.916 21 C 0.010 3.990 22 N -0.682 5.682 23 Si 0.972 3.028 24 H -0.254 1.254 25 H -0.272 1.272 26 H -0.271 1.271 27 N -0.504 5.504 28 C -0.082 4.082 29 C -0.126 4.126 30 C -0.123 4.123 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.040 0.960 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.013 0.987 37 H 0.402 0.598 38 H 0.414 0.586 39 H 0.130 0.870 40 H 0.137 0.863 41 H 0.104 0.896 42 H 0.267 0.733 43 H 0.043 0.957 44 H 0.072 0.928 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.083 0.917 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.855 3.391 14.067 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.033 3.967 4 H 0.114 0.886 5 C -0.170 4.170 6 H 0.125 0.875 7 C -0.176 4.176 8 C 0.044 3.956 9 H 0.080 0.920 10 N -0.366 5.366 11 C 0.359 3.641 12 O -0.383 6.383 13 N -0.314 5.314 14 C 0.126 3.874 15 C -0.373 4.373 16 C -0.057 4.057 17 C -0.356 4.356 18 C 0.112 3.888 19 C -0.498 4.498 20 H 0.103 0.897 21 C -0.216 4.216 22 N -0.301 5.301 23 Si 0.793 3.207 24 H -0.177 1.177 25 H -0.197 1.197 26 H -0.196 1.196 27 N -0.223 5.223 28 C -0.083 4.083 29 C -0.183 4.183 30 C -0.181 4.181 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.032 0.968 37 H 0.239 0.761 38 H 0.250 0.750 39 H 0.148 0.852 40 H 0.155 0.845 41 H 0.122 0.878 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.102 0.898 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.239 5.077 13.858 20.507 hybrid contribution 0.030 -0.864 -0.553 1.027 sum -14.209 4.213 13.304 19.916 Atomic orbital electron populations 1.22936 0.79696 1.03561 1.00592 1.87756 1.20952 1.26524 1.94215 1.23125 0.93946 0.85567 0.94012 0.88606 1.23598 0.97188 1.00451 0.95766 0.87512 1.21264 0.99064 1.00831 0.96410 1.21718 0.97098 0.80760 0.96033 0.91993 1.44549 1.44207 1.07538 1.40271 1.16667 0.82122 0.83193 0.82164 1.91356 1.44901 1.52786 1.49213 1.42427 1.49232 1.06794 1.32970 1.18855 0.90334 0.89754 0.88440 1.20910 1.14270 0.93804 1.08328 1.21004 0.92970 0.98691 0.93059 1.21802 1.11011 0.94815 1.07922 1.18895 0.89734 0.91341 0.88866 1.19906 1.22684 0.92456 1.14754 0.89747 1.27034 0.96956 1.01317 0.96265 1.70582 1.24472 1.17046 1.17977 0.85318 0.78501 0.77886 0.78979 1.17712 1.19717 1.19568 1.68673 1.10194 1.33601 1.09825 1.22443 0.94348 0.98083 0.93407 1.21480 1.00823 0.97903 0.98108 1.21563 1.01843 0.92675 1.01993 0.88806 0.92533 0.94137 0.92217 0.92255 0.96773 0.76071 0.74973 0.85247 0.84523 0.87830 0.92180 0.93794 0.90919 0.91861 0.91411 0.89808 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.86 113.37 1.23 1.60 16 2 O -0.38 -7.05 6.52 -148.98 -0.97 -8.02 16 3 C 0.09 1.69 3.62 31.12 0.11 1.80 16 4 H 0.10 1.32 7.85 -2.39 -0.02 1.30 16 5 C -0.15 -3.74 3.97 -10.27 -0.04 -3.78 16 6 H 0.11 2.43 7.65 -2.39 -0.02 2.41 16 7 C -0.12 -3.47 8.96 71.98 0.64 -2.83 16 8 C 0.15 4.43 3.60 45.52 0.16 4.60 16 9 H 0.06 2.28 7.49 -2.39 -0.02 2.26 16 10 N -0.71 -22.72 3.58 -455.31 -1.63 -24.35 16 11 C 0.66 28.93 8.50 179.05 1.52 30.45 16 12 O -0.51 -28.30 11.74 -3.93 -0.05 -28.34 16 13 N -0.66 -27.76 5.39 -322.13 -1.74 -29.50 16 14 C 0.37 18.69 7.43 133.26 0.99 19.68 16 15 C -0.35 -15.56 9.96 22.72 0.23 -15.33 16 16 C -0.03 -1.50 10.15 22.40 0.23 -1.27 16 17 C -0.33 -17.45 9.83 22.87 0.22 -17.23 16 18 C 0.24 14.24 6.55 40.20 0.26 14.50 16 19 C -0.47 -27.60 9.14 23.47 0.21 -27.38 16 20 H 0.08 4.68 7.85 -2.91 -0.02 4.66 16 21 C 0.01 0.56 5.50 85.29 0.47 1.03 16 22 N -0.68 -40.89 8.99 21.84 0.20 -40.70 16 23 Si 0.97 42.23 29.56 68.60 2.03 44.26 16 24 H -0.25 -10.49 7.11 99.48 0.71 -9.78 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 N -0.50 -30.19 5.74 -186.36 -1.07 -31.26 16 28 C -0.08 -1.63 1.34 -51.65 -0.07 -1.70 16 29 C -0.13 -2.38 8.43 71.98 0.61 -1.77 16 30 C -0.12 -1.98 9.07 71.98 0.65 -1.33 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 1.77 6.59 -2.39 -0.02 1.75 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.40 10.87 6.09 -92.71 -0.56 10.30 16 38 H 0.41 13.20 8.71 -92.70 -0.81 12.39 16 39 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 40 H 0.14 4.95 8.06 -2.91 -0.02 4.93 16 41 H 0.10 5.07 8.06 -2.91 -0.02 5.04 16 42 H 0.27 15.17 8.29 -92.71 -0.77 14.40 16 43 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.06 1.24 5.63 -2.39 -0.01 1.22 16 46 H 0.07 1.00 7.34 -2.39 -0.02 0.98 16 47 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -77.56 380.70 3.82 -73.74 By element: Atomic # 1 Polarization: 43.50 SS G_CDS: -0.39 Total: 43.11 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 7.44 Total: 1.05 kcal Atomic # 7 Polarization: -121.56 SS G_CDS: -4.24 Total: -125.80 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -1.02 Total: -36.36 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -77.56 3.82 -73.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881149492.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.603 kcal (2) G-P(sol) polarization free energy of solvation -77.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds