Wall clock time and date at job start Tue Mar 31 2020 17:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99944 * 2 1 4 4 H 1.09003 * 112.91081 * 18.74021 * 3 2 1 5 5 C 1.53787 * 113.60953 * 247.49331 * 3 2 1 6 6 H 1.09001 * 113.61004 * 156.33574 * 5 3 2 7 7 C 1.52995 * 113.61580 * 25.43344 * 5 3 2 8 8 C 1.53777 * 87.08173 * 270.88372 * 5 3 2 9 9 H 1.08997 * 113.61939 * 89.11338 * 8 5 3 10 10 N 1.46497 * 113.69089 * 220.00877 * 8 5 3 11 11 C 1.34773 * 120.00213 * 252.53064 * 10 8 5 12 12 O 1.21580 * 119.99767 * 0.02562 * 11 10 8 13 13 N 1.34777 * 120.00340 * 180.02562 * 11 10 8 14 14 C 1.39246 * 120.00064 * 174.85439 * 13 11 10 15 15 C 1.39684 * 119.57391 * 185.33527 * 14 13 11 16 16 C 1.38646 * 119.49588 * 179.97438 * 15 14 13 17 17 C 1.38352 * 118.67202 * 359.97438 * 16 15 14 18 18 C 1.40576 * 119.12837 * 0.02562 * 17 16 15 19 19 C 1.41336 * 119.78620 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99480 * 0.02562 * 19 18 17 21 21 C 1.40025 * 119.99702 * 180.02562 * 19 18 17 22 22 N 1.30738 * 120.00593 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99600 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47409 * 89.99983 * 23 21 19 25 25 H 1.48497 * 109.47375 * 210.00021 * 23 21 19 26 26 H 1.48503 * 109.47488 * 329.99965 * 23 21 19 27 27 N 1.31896 * 119.57629 * 5.05172 * 14 13 11 28 28 C 1.53775 * 113.61686 * 149.99887 * 3 2 1 29 29 C 1.53007 * 113.61347 * 334.56398 * 28 3 2 30 30 C 1.53000 * 113.69258 * 203.67308 * 28 3 2 31 31 H 1.08998 * 109.47319 * 300.00761 * 1 2 3 32 32 H 1.09004 * 109.46931 * 60.00125 * 1 2 3 33 33 H 1.09002 * 109.47293 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47298 * 322.50420 * 7 5 3 35 35 H 1.09002 * 109.47647 * 82.49869 * 7 5 3 36 36 H 1.08997 * 109.47262 * 202.50556 * 7 5 3 37 37 H 0.97002 * 120.00222 * 72.53699 * 10 8 5 38 38 H 0.97000 * 119.99979 * 354.84664 * 13 11 10 39 39 H 1.08004 * 120.25185 * 359.97438 * 15 14 13 40 40 H 1.08006 * 120.66503 * 179.97438 * 16 15 14 41 41 H 1.08003 * 120.43606 * 180.02562 * 17 16 15 42 42 H 0.96996 * 120.00577 * 179.97438 * 22 21 19 43 43 H 1.08997 * 109.47123 * 157.49826 * 29 28 3 44 44 H 1.08997 * 109.47263 * 37.49699 * 29 28 3 45 45 H 1.09004 * 109.46899 * 277.49683 * 29 28 3 46 46 H 1.08997 * 109.46797 * 200.93425 * 30 28 3 47 47 H 1.08996 * 109.46979 * 320.93358 * 30 28 3 48 48 H 1.08999 * 109.47047 * 80.93347 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3142 2.0799 0.3226 5 6 2.7535 1.6488 -1.3018 6 1 2.8390 2.7196 -1.4864 7 6 2.2471 0.8731 -2.5195 8 6 4.0061 1.0330 -0.6565 9 1 4.1085 -0.0373 -0.8358 10 7 5.2374 1.7766 -0.9343 11 6 6.1529 1.2709 -1.7842 12 8 5.9567 0.1976 -2.3208 13 7 7.2859 1.9547 -2.0394 14 6 8.2792 1.3855 -2.8321 15 6 9.4947 2.0531 -2.9994 16 6 10.4828 1.4846 -3.7886 17 6 10.2318 0.2641 -4.3898 18 6 8.9882 -0.3578 -4.1828 19 6 8.7168 -1.6046 -4.7907 20 1 9.4638 -2.0765 -5.4117 21 6 7.4793 -2.2277 -4.5879 22 7 6.5752 -1.6566 -3.8359 23 14 7.1209 -3.8758 -5.3909 24 1 7.5417 -4.9716 -4.4813 25 1 5.6651 -3.9886 -5.6613 26 1 7.8710 -3.9776 -6.6685 27 7 8.0623 0.2203 -3.4108 28 6 3.3755 1.3720 0.7045 29 6 3.5740 0.2826 1.7604 30 6 3.7358 2.7681 1.2163 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.9931 -0.1443 -2.2223 35 1 1.3619 1.3658 -2.9218 36 1 3.0255 0.8452 -3.2819 37 1 5.3938 2.6330 -0.5064 38 1 7.4094 2.8435 -1.6709 39 1 9.6636 3.0048 -2.5176 40 1 11.4295 1.9845 -3.9312 41 1 10.9814 -0.2047 -5.0101 42 1 5.7179 -2.0881 -3.6957 43 1 4.6401 0.1268 1.9256 44 1 3.1205 -0.6461 1.4140 45 1 3.1029 0.5910 2.6937 46 1 4.8146 2.8364 1.3564 47 1 3.4157 3.5151 0.4900 48 1 3.2339 2.9473 2.1671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881149493.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:29 Heat of formation + Delta-G solvation = 9.245506 kcal Electronic energy + Delta-G solvation = -29967.465266 eV Core-core repulsion = 26024.557020 eV Total energy + Delta-G solvation = -3942.908246 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.78619 -39.07945 -37.53171 -36.39928 -33.97720 -32.91157 -32.59010 -32.00795 -30.20362 -28.83519 -27.73945 -27.38079 -26.31447 -25.48063 -24.23032 -21.86740 -21.09933 -20.68093 -19.69043 -18.78343 -17.91531 -17.19274 -16.65091 -15.90990 -15.72037 -15.34016 -14.78028 -14.55072 -14.42785 -14.31045 -14.11231 -13.62063 -13.45970 -13.33500 -12.99389 -12.78134 -12.68725 -12.32625 -12.20520 -12.15929 -11.98922 -11.83990 -11.71004 -11.33777 -11.15847 -11.06944 -10.92818 -10.87807 -10.57777 -10.44450 -10.38966 -10.09093 -9.85612 -9.59324 -9.40262 -8.99017 -8.94462 -8.25559 -7.87404 -7.12217 -6.85979 -6.02724 -4.31373 2.91863 3.20200 3.23141 3.25277 3.33946 3.36977 3.52430 4.13725 4.24279 4.40486 4.51129 4.79177 4.86636 4.97788 5.04426 5.08906 5.15202 5.21844 5.27951 5.43612 5.50039 5.53151 5.57379 5.70931 5.78593 5.89440 5.94154 6.04697 6.12113 6.14665 6.17988 6.22695 6.41173 6.44537 6.55040 6.61664 6.71397 6.88215 6.92245 7.10506 7.18168 7.32289 7.46659 7.69895 7.83741 7.88831 8.25420 8.38366 8.76344 8.89033 9.14249 9.71451 10.35605 10.57937 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012059 B = 0.003999 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.403482 B = 6999.869849 C = 8729.535869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.357 6.357 3 C 0.076 3.924 4 H 0.073 0.927 5 C -0.143 4.143 6 H 0.092 0.908 7 C -0.136 4.136 8 C 0.174 3.826 9 H 0.120 0.880 10 N -0.749 5.749 11 C 0.662 3.338 12 O -0.460 6.460 13 N -0.675 5.675 14 C 0.388 3.612 15 C -0.360 4.360 16 C -0.036 4.036 17 C -0.308 4.308 18 C 0.271 3.729 19 C -0.426 4.426 20 H 0.081 0.919 21 C 0.057 3.943 22 N -0.645 5.645 23 Si 0.892 3.108 24 H -0.272 1.272 25 H -0.278 1.278 26 H -0.264 1.264 27 N -0.470 5.470 28 C -0.096 4.096 29 C -0.131 4.131 30 C -0.130 4.130 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.042 0.958 36 H 0.063 0.937 37 H 0.382 0.618 38 H 0.393 0.607 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.272 0.728 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.049 0.951 46 H 0.066 0.934 47 H 0.059 0.941 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.430 8.179 10.533 18.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.017 3.983 4 H 0.091 0.909 5 C -0.163 4.163 6 H 0.110 0.890 7 C -0.193 4.193 8 C 0.068 3.932 9 H 0.137 0.863 10 N -0.407 5.407 11 C 0.360 3.640 12 O -0.323 6.323 13 N -0.323 5.323 14 C 0.148 3.852 15 C -0.386 4.386 16 C -0.060 4.060 17 C -0.332 4.332 18 C 0.146 3.854 19 C -0.456 4.456 20 H 0.099 0.901 21 C -0.173 4.173 22 N -0.263 5.263 23 Si 0.717 3.283 24 H -0.197 1.197 25 H -0.204 1.204 26 H -0.188 1.188 27 N -0.189 5.189 28 C -0.098 4.098 29 C -0.188 4.188 30 C -0.188 4.188 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.216 0.784 38 H 0.226 0.774 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.557 6.437 10.217 18.155 hybrid contribution 0.578 1.024 -0.035 1.177 sum -12.979 7.461 10.182 18.105 Atomic orbital electron populations 1.22788 0.81300 1.02660 0.99730 1.87883 1.19227 1.26143 1.94251 1.23042 0.93646 0.85076 0.96537 0.90915 1.23580 0.97221 1.00351 0.95190 0.89006 1.21517 1.00254 1.00432 0.97083 1.22282 0.81097 0.97912 0.91958 0.86261 1.45340 1.20824 1.24431 1.50122 1.16502 0.80363 0.85594 0.81518 1.91382 1.74696 1.17874 1.48354 1.42597 1.17326 1.19231 1.53158 1.18343 0.84870 0.91779 0.90193 1.20430 0.96744 1.04363 1.17069 1.20534 0.96191 0.94616 0.94693 1.21612 1.00495 0.99423 1.11638 1.18390 0.86384 0.92280 0.88328 1.19562 0.99394 1.01646 1.25013 0.90084 1.26175 0.96741 0.98733 0.95652 1.70335 1.02935 1.32722 1.20352 0.86578 0.78203 0.83134 0.80403 1.19731 1.20366 1.18846 1.68703 1.30991 1.06993 1.12212 1.22521 0.94790 0.96672 0.95784 1.21577 1.01656 0.98566 0.97012 1.21560 1.02041 0.94236 1.00925 0.94308 0.94036 0.89677 0.91578 0.93926 0.91777 0.78398 0.77438 0.89279 0.88736 0.88686 0.91626 0.92539 0.91137 0.93151 0.91528 0.92193 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.85 101.05 1.10 1.37 16 2 O -0.36 -4.22 7.70 -35.23 -0.27 -4.49 16 3 C 0.08 0.82 3.65 -25.92 -0.09 0.73 16 4 H 0.07 0.66 7.83 -51.93 -0.41 0.25 16 5 C -0.14 -1.80 3.79 -89.81 -0.34 -2.14 16 6 H 0.09 1.06 7.64 -51.93 -0.40 0.67 16 7 C -0.14 -1.92 9.56 37.16 0.36 -1.57 16 8 C 0.17 2.53 3.18 -67.12 -0.21 2.31 16 9 H 0.12 2.20 7.38 -51.93 -0.38 1.82 16 10 N -0.75 -11.37 5.24 -57.88 -0.30 -11.67 16 11 C 0.66 13.82 8.52 -86.92 -0.74 13.08 16 12 O -0.46 -11.88 11.70 5.29 0.06 -11.81 16 13 N -0.67 -13.69 5.39 -15.79 -0.09 -13.78 16 14 C 0.39 9.71 7.43 -155.00 -1.15 8.56 16 15 C -0.36 -8.28 9.95 -38.89 -0.39 -8.67 16 16 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 17 C -0.31 -7.97 9.83 -38.66 -0.38 -8.35 16 18 C 0.27 7.81 6.55 -84.99 -0.56 7.25 16 19 C -0.43 -11.99 9.14 -37.73 -0.34 -12.34 16 20 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 21 C 0.06 1.53 5.50 -17.35 -0.10 1.43 16 22 N -0.65 -18.30 8.98 55.55 0.50 -17.80 16 23 Si 0.89 19.77 29.56 -169.99 -5.02 14.75 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 27 N -0.47 -13.52 5.73 -10.26 -0.06 -13.58 16 28 C -0.10 -1.06 1.35 -153.69 -0.21 -1.27 16 29 C -0.13 -1.50 9.04 37.16 0.34 -1.16 16 30 C -0.13 -1.11 8.00 37.16 0.30 -0.81 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.98 6.96 -51.93 -0.36 0.62 16 35 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.38 4.54 6.72 -40.82 -0.27 4.27 16 38 H 0.39 6.15 8.71 -40.82 -0.36 5.80 16 39 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 40 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 41 H 0.09 2.28 8.06 -52.48 -0.42 1.86 16 42 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.90 6.96 -51.93 -0.36 0.53 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.57 7.20 -51.93 -0.37 0.19 16 47 H 0.06 0.46 7.34 -51.93 -0.38 0.08 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 384.31 15.07 5.79 5.79 Total: -1.00 -33.62 384.31 -9.71 -43.32 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -7.49 Total: 12.10 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -2.83 Total: -2.83 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.05 Total: -56.83 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.21 Total: -16.30 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.62 -9.71 -43.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881149493.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.570 kcal (2) G-P(sol) polarization free energy of solvation -33.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds