Wall clock time and date at job start Tue Mar 31 2020 17:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99944 * 2 1 4 4 H 1.09003 * 112.91081 * 18.74021 * 3 2 1 5 5 C 1.53787 * 113.60953 * 247.49331 * 3 2 1 6 6 H 1.09001 * 113.61004 * 156.33574 * 5 3 2 7 7 C 1.52995 * 113.61580 * 25.43344 * 5 3 2 8 8 C 1.53777 * 87.08173 * 270.88372 * 5 3 2 9 9 H 1.08997 * 113.61939 * 89.11338 * 8 5 3 10 10 N 1.46497 * 113.69089 * 220.00877 * 8 5 3 11 11 C 1.34773 * 120.00213 * 252.53064 * 10 8 5 12 12 O 1.21580 * 119.99767 * 0.02562 * 11 10 8 13 13 N 1.34777 * 120.00340 * 180.02562 * 11 10 8 14 14 C 1.39246 * 120.00064 * 174.85439 * 13 11 10 15 15 C 1.39684 * 119.57391 * 185.33527 * 14 13 11 16 16 C 1.38646 * 119.49588 * 179.97438 * 15 14 13 17 17 C 1.38352 * 118.67202 * 359.97438 * 16 15 14 18 18 C 1.40576 * 119.12837 * 0.02562 * 17 16 15 19 19 C 1.41336 * 119.78620 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99480 * 0.02562 * 19 18 17 21 21 C 1.40025 * 119.99702 * 180.02562 * 19 18 17 22 22 N 1.30738 * 120.00593 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99600 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47409 * 89.99983 * 23 21 19 25 25 H 1.48497 * 109.47375 * 210.00021 * 23 21 19 26 26 H 1.48503 * 109.47488 * 329.99965 * 23 21 19 27 27 N 1.31896 * 119.57629 * 5.05172 * 14 13 11 28 28 C 1.53775 * 113.61686 * 149.99887 * 3 2 1 29 29 C 1.53007 * 113.61347 * 334.56398 * 28 3 2 30 30 C 1.53000 * 113.69258 * 203.67308 * 28 3 2 31 31 H 1.08998 * 109.47319 * 300.00761 * 1 2 3 32 32 H 1.09004 * 109.46931 * 60.00125 * 1 2 3 33 33 H 1.09002 * 109.47293 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47298 * 322.50420 * 7 5 3 35 35 H 1.09002 * 109.47647 * 82.49869 * 7 5 3 36 36 H 1.08997 * 109.47262 * 202.50556 * 7 5 3 37 37 H 0.97002 * 120.00222 * 72.53699 * 10 8 5 38 38 H 0.97000 * 119.99979 * 354.84664 * 13 11 10 39 39 H 1.08004 * 120.25185 * 359.97438 * 15 14 13 40 40 H 1.08006 * 120.66503 * 179.97438 * 16 15 14 41 41 H 1.08003 * 120.43606 * 180.02562 * 17 16 15 42 42 H 0.96996 * 120.00577 * 179.97438 * 22 21 19 43 43 H 1.08997 * 109.47123 * 157.49826 * 29 28 3 44 44 H 1.08997 * 109.47263 * 37.49699 * 29 28 3 45 45 H 1.09004 * 109.46899 * 277.49683 * 29 28 3 46 46 H 1.08997 * 109.46797 * 200.93425 * 30 28 3 47 47 H 1.08996 * 109.46979 * 320.93358 * 30 28 3 48 48 H 1.08999 * 109.47047 * 80.93347 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3142 2.0799 0.3226 5 6 2.7535 1.6488 -1.3018 6 1 2.8390 2.7196 -1.4864 7 6 2.2471 0.8731 -2.5195 8 6 4.0061 1.0330 -0.6565 9 1 4.1085 -0.0373 -0.8358 10 7 5.2374 1.7766 -0.9343 11 6 6.1529 1.2709 -1.7842 12 8 5.9567 0.1976 -2.3208 13 7 7.2859 1.9547 -2.0394 14 6 8.2792 1.3855 -2.8321 15 6 9.4947 2.0531 -2.9994 16 6 10.4828 1.4846 -3.7886 17 6 10.2318 0.2641 -4.3898 18 6 8.9882 -0.3578 -4.1828 19 6 8.7168 -1.6046 -4.7907 20 1 9.4638 -2.0765 -5.4117 21 6 7.4793 -2.2277 -4.5879 22 7 6.5752 -1.6566 -3.8359 23 14 7.1209 -3.8758 -5.3909 24 1 7.5417 -4.9716 -4.4813 25 1 5.6651 -3.9886 -5.6613 26 1 7.8710 -3.9776 -6.6685 27 7 8.0623 0.2203 -3.4108 28 6 3.3755 1.3720 0.7045 29 6 3.5740 0.2826 1.7604 30 6 3.7358 2.7681 1.2163 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.9931 -0.1443 -2.2223 35 1 1.3619 1.3658 -2.9218 36 1 3.0255 0.8452 -3.2819 37 1 5.3938 2.6330 -0.5064 38 1 7.4094 2.8435 -1.6709 39 1 9.6636 3.0048 -2.5176 40 1 11.4295 1.9845 -3.9312 41 1 10.9814 -0.2047 -5.0101 42 1 5.7179 -2.0881 -3.6957 43 1 4.6401 0.1268 1.9256 44 1 3.1205 -0.6461 1.4140 45 1 3.1029 0.5910 2.6937 46 1 4.8146 2.8364 1.3564 47 1 3.4157 3.5151 0.4900 48 1 3.2339 2.9473 2.1671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881149493.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:28 Heat of formation + Delta-G solvation = -12.353608 kcal Electronic energy + Delta-G solvation = -29968.401874 eV Core-core repulsion = 26024.557020 eV Total energy + Delta-G solvation = -3943.844854 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.87153 -40.72949 -39.26812 -37.38962 -35.84542 -34.79627 -34.00489 -33.02313 -32.16779 -30.73075 -28.48769 -28.35989 -27.54866 -27.06074 -25.43794 -23.63143 -22.98091 -21.69625 -21.33854 -19.95374 -19.63966 -18.59175 -18.14342 -17.44726 -16.64437 -16.45302 -16.26152 -16.21772 -16.00176 -15.62399 -15.58552 -15.14206 -14.71292 -14.65787 -14.42670 -14.11641 -13.94377 -13.73767 -13.66129 -13.15534 -13.14637 -12.96533 -12.89970 -12.71310 -12.55527 -12.53720 -12.29921 -12.28411 -12.19952 -11.80950 -11.75839 -11.58353 -11.36016 -11.05071 -10.83621 -10.77391 -10.28232 -9.87031 -9.60269 -9.06763 -8.74736 -7.99811 -6.39160 0.99302 1.30818 1.38081 1.50592 1.53309 1.88908 2.26732 2.60600 2.73438 3.06065 3.43018 3.45409 3.58467 3.82756 4.02519 4.10658 4.27029 4.32504 4.38216 4.43048 4.51567 4.59270 4.67339 4.69745 4.73384 4.80987 4.84668 4.89883 4.92372 4.96979 4.98744 5.01777 5.05869 5.09486 5.13263 5.19566 5.28721 5.41469 5.45711 5.51427 5.70004 5.84746 5.89765 5.95083 6.07815 6.35548 6.37910 6.45809 6.84661 7.10043 7.33351 8.09582 8.41671 8.60287 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012059 B = 0.003999 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.403482 B = 6999.869849 C = 8729.535869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.385 6.385 3 C 0.087 3.913 4 H 0.107 0.893 5 C -0.140 4.140 6 H 0.112 0.888 7 C -0.129 4.129 8 C 0.157 3.843 9 H 0.068 0.932 10 N -0.724 5.724 11 C 0.654 3.346 12 O -0.514 6.514 13 N -0.663 5.663 14 C 0.365 3.635 15 C -0.346 4.346 16 C -0.034 4.034 17 C -0.333 4.333 18 C 0.237 3.763 19 C -0.467 4.467 20 H 0.085 0.915 21 C 0.010 3.990 22 N -0.681 5.681 23 Si 0.970 3.030 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.254 1.254 27 N -0.507 5.507 28 C -0.083 4.083 29 C -0.129 4.129 30 C -0.129 4.129 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.021 0.979 37 H 0.403 0.597 38 H 0.416 0.584 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.103 0.897 42 H 0.266 0.734 43 H 0.041 0.959 44 H 0.049 0.951 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.075 0.925 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.197 10.812 12.143 20.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.303 6.303 3 C 0.028 3.972 4 H 0.125 0.875 5 C -0.160 4.160 6 H 0.130 0.870 7 C -0.186 4.186 8 C 0.051 3.949 9 H 0.087 0.913 10 N -0.383 5.383 11 C 0.352 3.648 12 O -0.381 6.381 13 N -0.313 5.313 14 C 0.125 3.875 15 C -0.372 4.372 16 C -0.058 4.058 17 C -0.356 4.356 18 C 0.112 3.888 19 C -0.498 4.498 20 H 0.103 0.897 21 C -0.216 4.216 22 N -0.300 5.300 23 Si 0.791 3.209 24 H -0.192 1.192 25 H -0.201 1.201 26 H -0.177 1.177 27 N -0.226 5.226 28 C -0.084 4.084 29 C -0.186 4.186 30 C -0.186 4.186 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.241 0.759 38 H 0.253 0.747 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.122 0.878 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.094 0.906 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.334 9.153 11.882 20.747 hybrid contribution 0.862 0.346 -0.460 1.036 sum -13.472 9.499 11.422 20.055 Atomic orbital electron populations 1.22968 0.79635 1.03457 1.00943 1.87880 1.21189 1.27004 1.94242 1.23023 0.94009 0.85605 0.94558 0.87527 1.23625 0.96263 1.00841 0.95289 0.86971 1.21416 0.99813 1.00447 0.96939 1.22342 0.81357 0.95474 0.95714 0.91344 1.45034 1.19859 1.24958 1.48469 1.16824 0.80957 0.85177 0.81811 1.91377 1.75851 1.20350 1.50514 1.42430 1.16420 1.20074 1.52399 1.18858 0.86715 0.91445 0.90436 1.20917 0.95392 1.05296 1.15557 1.21024 0.97910 0.93591 0.93276 1.21798 0.99932 1.00907 1.12919 1.18881 0.87774 0.93170 0.88997 1.19878 1.00513 1.02734 1.26676 0.89703 1.27027 0.96108 1.02505 0.95958 1.70564 1.02987 1.34354 1.22063 0.85401 0.77961 0.77961 0.79569 1.19156 1.20054 1.17724 1.68664 1.31948 1.08872 1.13123 1.22529 0.94151 0.98219 0.93500 1.21545 1.00711 0.98108 0.98251 1.21605 1.02397 0.92226 1.02342 0.92238 0.93509 0.89320 0.93042 0.91549 0.95937 0.75934 0.74700 0.85008 0.84461 0.87847 0.92291 0.93994 0.93187 0.90648 0.91511 0.90638 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.85 113.37 1.23 1.63 16 2 O -0.38 -8.83 7.70 -148.98 -1.15 -9.98 16 3 C 0.09 1.70 3.65 31.12 0.11 1.81 16 4 H 0.11 1.43 7.83 -2.39 -0.02 1.41 16 5 C -0.14 -3.41 3.79 -10.27 -0.04 -3.45 16 6 H 0.11 2.30 7.64 -2.39 -0.02 2.28 16 7 C -0.13 -3.79 9.56 71.98 0.69 -3.11 16 8 C 0.16 4.66 3.18 45.52 0.14 4.81 16 9 H 0.07 2.78 7.38 -2.39 -0.02 2.76 16 10 N -0.72 -21.92 5.24 -455.31 -2.38 -24.30 16 11 C 0.65 28.15 8.52 179.06 1.53 29.68 16 12 O -0.51 -28.36 11.70 -3.97 -0.05 -28.40 16 13 N -0.66 -26.72 5.39 -322.13 -1.74 -28.45 16 14 C 0.37 18.37 7.43 133.26 0.99 19.36 16 15 C -0.35 -15.17 9.95 22.72 0.23 -14.95 16 16 C -0.03 -1.51 10.15 22.39 0.23 -1.29 16 17 C -0.33 -17.37 9.83 22.87 0.22 -17.14 16 18 C 0.24 14.23 6.55 40.19 0.26 14.50 16 19 C -0.47 -27.68 9.14 23.47 0.21 -27.46 16 20 H 0.08 4.71 7.85 -2.91 -0.02 4.68 16 21 C 0.01 0.56 5.50 85.29 0.47 1.03 16 22 N -0.68 -41.29 8.98 21.84 0.20 -41.09 16 23 Si 0.97 42.76 29.56 68.60 2.03 44.79 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 26 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 27 N -0.51 -30.33 5.73 -186.36 -1.07 -31.40 16 28 C -0.08 -1.69 1.35 -51.65 -0.07 -1.76 16 29 C -0.13 -2.86 9.04 71.98 0.65 -2.21 16 30 C -0.13 -1.70 8.00 71.98 0.58 -1.12 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.63 6.96 -2.39 -0.02 1.62 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.40 8.79 6.72 -92.71 -0.62 8.16 16 38 H 0.42 12.19 8.71 -92.71 -0.81 11.38 16 39 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 40 H 0.14 4.90 8.06 -2.91 -0.02 4.87 16 41 H 0.10 5.04 8.06 -2.91 -0.02 5.01 16 42 H 0.27 15.47 8.29 -92.71 -0.77 14.70 16 43 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.05 1.31 6.96 -2.39 -0.02 1.29 16 45 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 46 H 0.07 0.90 7.20 -2.39 -0.02 0.88 16 47 H 0.07 0.80 7.34 -2.39 -0.02 0.78 16 48 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -80.67 384.31 2.83 -77.84 By element: Atomic # 1 Polarization: 41.12 SS G_CDS: -0.45 Total: 40.67 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 7.43 Total: 0.32 kcal Atomic # 7 Polarization: -120.25 SS G_CDS: -4.99 Total: -125.24 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -1.19 Total: -38.38 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -80.67 2.83 -77.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881149493.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.489 kcal (2) G-P(sol) polarization free energy of solvation -80.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds