Wall clock time and date at job start Tue Mar 31 2020 17:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00531 * 2 1 4 4 H 1.09005 * 112.90439 * 18.74584 * 3 2 1 5 5 C 1.53780 * 113.61559 * 247.49993 * 3 2 1 6 6 H 1.09007 * 113.61373 * 334.56396 * 5 3 2 7 7 C 1.52995 * 113.61643 * 105.46687 * 5 3 2 8 8 C 1.53783 * 87.07881 * 220.01675 * 5 3 2 9 9 H 1.09003 * 113.68687 * 139.99469 * 8 5 3 10 10 N 1.46497 * 113.61060 * 270.88151 * 8 5 3 11 11 C 1.34780 * 119.99874 * 252.49600 * 10 8 5 12 12 O 1.21573 * 120.00075 * 0.02562 * 11 10 8 13 13 N 1.34787 * 119.99703 * 180.02562 * 11 10 8 14 14 C 1.39242 * 119.99417 * 185.20676 * 13 11 10 15 15 C 1.39688 * 119.57298 * 174.78191 * 14 13 11 16 16 C 1.38647 * 119.49975 * 180.02562 * 15 14 13 17 17 C 1.38359 * 118.66528 * 359.74280 * 16 15 14 18 18 C 1.40563 * 119.13264 * 0.47749 * 17 16 15 19 19 C 1.41330 * 119.79057 * 179.79384 * 18 17 16 20 20 H 1.08002 * 119.99821 * 4.90382 * 19 18 17 21 21 C 1.40025 * 120.00627 * 184.90908 * 19 18 17 22 22 N 1.30747 * 119.99666 * 354.82680 * 21 19 18 23 23 Si 1.86804 * 120.00299 * 174.82340 * 21 19 18 24 24 H 1.48494 * 109.47220 * 275.00173 * 23 21 19 25 25 H 1.48503 * 109.46910 * 35.00295 * 23 21 19 26 26 H 1.48501 * 109.46848 * 154.99921 * 23 21 19 27 27 N 1.31902 * 119.58276 * 354.76011 * 14 13 11 28 28 C 1.53776 * 87.08272 * 25.43310 * 8 5 3 29 29 C 1.52995 * 113.61648 * 89.11857 * 28 8 5 30 30 C 1.53000 * 113.61487 * 220.02353 * 28 8 5 31 31 H 1.09003 * 109.47362 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47127 * 300.00228 * 1 2 3 33 33 H 1.09002 * 109.46847 * 59.99752 * 1 2 3 34 34 H 1.09001 * 109.47605 * 157.49608 * 7 5 3 35 35 H 1.09004 * 109.47194 * 277.50032 * 7 5 3 36 36 H 1.09004 * 109.46878 * 37.49518 * 7 5 3 37 37 H 0.96997 * 120.00146 * 72.50422 * 10 8 5 38 38 H 0.96992 * 120.00160 * 5.20415 * 13 11 10 39 39 H 1.08002 * 120.25047 * 359.97438 * 15 14 13 40 40 H 1.07994 * 120.66325 * 180.02562 * 16 15 14 41 41 H 1.07999 * 120.43061 * 180.24848 * 17 16 15 42 42 H 0.97002 * 119.99670 * 180.02562 * 22 21 19 43 43 H 1.08993 * 109.47361 * 59.99772 * 29 28 8 44 44 H 1.08999 * 109.47087 * 180.02562 * 29 28 8 45 45 H 1.09003 * 109.47156 * 299.99767 * 29 28 8 46 46 H 1.08993 * 109.47522 * 59.99140 * 30 28 8 47 47 H 1.08996 * 109.47389 * 179.97438 * 30 28 8 48 48 H 1.09004 * 109.46732 * 299.99902 * 30 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3143 2.0798 0.3227 5 6 2.7535 1.6488 -1.3018 6 1 3.1167 0.7739 -1.8410 7 6 1.9964 2.6297 -2.1993 8 6 3.8228 2.3180 -0.4222 9 1 4.8432 2.1407 -0.7621 10 7 3.5534 3.7308 -0.1436 11 6 4.2937 4.6878 -0.7374 12 8 5.1847 4.3786 -1.5045 13 7 4.0461 5.9876 -0.4807 14 6 4.7365 6.9780 -1.1745 15 6 4.3969 8.3191 -0.9817 16 6 5.0849 9.3040 -1.6737 17 6 6.0979 8.9244 -2.5364 18 6 6.3892 7.5580 -2.6907 19 6 7.4182 7.1545 -3.5715 20 1 8.0302 7.8964 -4.0628 21 6 7.6442 5.7929 -3.8072 22 7 6.9725 4.8931 -3.1373 23 14 8.9053 5.2618 -5.0789 24 1 8.2754 5.2442 -6.4235 25 1 10.0423 6.2171 -5.0774 26 1 9.4010 3.9020 -4.7465 27 7 5.7030 6.6378 -2.0051 28 6 3.3756 1.3718 0.7045 29 6 4.1241 0.0375 0.7175 30 6 3.3234 2.0387 2.0805 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.6995 3.1294 -2.8656 35 1 1.2590 2.0865 -2.7903 36 1 1.4913 3.3720 -1.5812 37 1 2.8423 3.9774 0.4682 38 1 3.3870 6.2331 0.1872 39 1 3.6037 8.5869 -0.2993 40 1 4.8382 10.3466 -1.5387 41 1 6.6551 9.6681 -3.0867 42 1 7.1293 3.9499 -3.3004 43 1 5.1904 0.2202 0.8503 44 1 3.7556 -0.5779 1.5383 45 1 3.9592 -0.4809 -0.2271 46 1 2.6188 2.8699 2.0549 47 1 2.9998 1.3113 2.8249 48 1 4.3142 2.4104 2.3419 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881149495.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:34 Heat of formation + Delta-G solvation = -11.151408 kcal Electronic energy + Delta-G solvation = -29950.463595 eV Core-core repulsion = 26006.670872 eV Total energy + Delta-G solvation = -3943.792722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.98992 -40.69417 -39.23921 -37.47320 -35.84708 -34.79980 -34.02875 -32.98384 -32.16368 -30.71446 -28.57965 -28.13604 -27.66659 -27.24397 -25.18915 -23.76054 -23.06526 -21.88891 -21.24144 -19.86964 -19.68680 -18.66812 -17.90366 -17.55628 -16.68289 -16.48624 -16.24384 -16.15316 -15.98676 -15.87137 -15.55531 -14.93309 -14.73843 -14.63998 -14.58512 -14.01615 -13.97843 -13.84485 -13.68631 -13.41563 -13.11447 -12.98178 -12.90465 -12.71410 -12.57393 -12.52722 -12.32391 -12.29572 -12.12695 -11.80823 -11.75722 -11.60001 -11.37449 -11.14496 -10.83811 -10.80982 -10.19907 -9.86884 -9.69676 -9.07605 -8.75268 -8.00565 -6.38344 0.99608 1.30971 1.39623 1.52034 1.53746 1.78872 2.27691 2.59391 2.89607 3.05903 3.29637 3.41205 3.53691 3.77989 3.89137 4.10038 4.25539 4.35994 4.38192 4.40040 4.51561 4.53418 4.63816 4.68737 4.76931 4.81065 4.83515 4.86758 4.89595 4.94373 4.99108 4.99698 5.05120 5.09243 5.13499 5.16884 5.26241 5.30701 5.42262 5.45771 5.69934 5.79942 5.88833 5.95280 6.06686 6.33795 6.36005 6.45427 6.84796 7.10321 7.29859 8.07449 8.41264 8.60442 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013461 B = 0.003647 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.520696 B = 7675.575739 C = 8866.898518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.386 6.386 3 C 0.091 3.909 4 H 0.102 0.898 5 C -0.141 4.141 6 H 0.092 0.908 7 C -0.123 4.123 8 C 0.153 3.847 9 H 0.071 0.929 10 N -0.712 5.712 11 C 0.662 3.338 12 O -0.512 6.512 13 N -0.661 5.661 14 C 0.367 3.633 15 C -0.346 4.346 16 C -0.034 4.034 17 C -0.332 4.332 18 C 0.238 3.762 19 C -0.468 4.468 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.682 5.682 23 Si 0.970 3.030 24 H -0.267 1.267 25 H -0.256 1.256 26 H -0.275 1.275 27 N -0.506 5.506 28 C -0.080 4.080 29 C -0.115 4.115 30 C -0.131 4.131 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.041 0.959 34 H 0.022 0.978 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.402 0.598 38 H 0.416 0.584 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.103 0.897 42 H 0.268 0.732 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.055 0.945 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.958 -9.718 10.227 19.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.305 6.305 3 C 0.033 3.967 4 H 0.120 0.880 5 C -0.162 4.162 6 H 0.110 0.890 7 C -0.180 4.180 8 C 0.046 3.954 9 H 0.089 0.911 10 N -0.371 5.371 11 C 0.360 3.640 12 O -0.379 6.379 13 N -0.312 5.312 14 C 0.127 3.873 15 C -0.371 4.371 16 C -0.058 4.058 17 C -0.355 4.355 18 C 0.112 3.888 19 C -0.498 4.498 20 H 0.102 0.898 21 C -0.214 4.214 22 N -0.301 5.301 23 Si 0.792 3.208 24 H -0.192 1.192 25 H -0.180 1.180 26 H -0.200 1.200 27 N -0.225 5.225 28 C -0.081 4.081 29 C -0.172 4.172 30 C -0.188 4.188 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.239 0.761 38 H 0.253 0.747 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.121 0.879 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.832 -11.341 9.425 19.548 hybrid contribution -0.287 1.235 -0.188 1.282 sum -13.119 -10.105 9.237 18.961 Atomic orbital electron populations 1.22954 0.80145 1.03620 1.00577 1.87913 1.20810 1.27317 1.94457 1.23941 0.93152 0.85425 0.94185 0.88020 1.23551 0.97414 0.98664 0.96525 0.88951 1.21438 0.99125 0.98431 0.99053 1.21487 0.98314 0.79215 0.96370 0.91101 1.44533 1.38318 1.03787 1.50427 1.16626 0.83425 0.81323 0.82592 1.91383 1.30815 1.80036 1.35689 1.42371 1.43037 1.03483 1.42293 1.18821 0.90887 0.86225 0.91397 1.20913 1.11070 0.91008 1.14124 1.21021 0.92970 0.98829 0.93002 1.21795 1.07010 0.96348 1.10376 1.18858 0.91519 0.88012 0.90377 1.19860 1.14090 0.93248 1.22645 0.89796 1.27001 0.98801 0.96881 0.98736 1.70555 1.29269 1.01166 1.29079 0.85410 0.78812 0.78075 0.78536 1.19179 1.17959 1.19956 1.68653 1.08346 1.35154 1.10369 1.22467 0.94880 0.95806 0.94970 1.21364 0.98884 0.94224 1.02735 1.21661 1.02111 1.00574 0.94500 0.88696 0.92818 0.93985 0.95855 0.92034 0.92047 0.76121 0.74663 0.85022 0.84545 0.87916 0.92160 0.92907 0.90748 0.92627 0.91396 0.90919 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.85 113.37 1.23 1.54 16 2 O -0.39 -7.56 9.80 -148.98 -1.46 -9.02 16 3 C 0.09 1.76 3.15 31.12 0.10 1.86 16 4 H 0.10 1.61 7.51 -2.38 -0.02 1.59 16 5 C -0.14 -3.57 3.82 -10.27 -0.04 -3.61 16 6 H 0.09 2.49 7.65 -2.38 -0.02 2.47 16 7 C -0.12 -3.31 9.12 71.98 0.66 -2.65 16 8 C 0.15 4.30 3.64 45.52 0.17 4.47 16 9 H 0.07 2.57 7.42 -2.39 -0.02 2.55 16 10 N -0.71 -20.08 3.67 -455.30 -1.67 -21.75 16 11 C 0.66 26.92 8.52 179.05 1.53 28.45 16 12 O -0.51 -27.09 11.71 -3.95 -0.05 -27.13 16 13 N -0.66 -25.44 5.39 -322.11 -1.74 -27.17 16 14 C 0.37 17.87 7.43 133.26 0.99 18.86 16 15 C -0.35 -14.76 9.95 22.72 0.23 -14.53 16 16 C -0.03 -1.49 10.15 22.40 0.23 -1.26 16 17 C -0.33 -17.06 9.83 22.87 0.22 -16.83 16 18 C 0.24 13.99 6.55 40.19 0.26 14.26 16 19 C -0.47 -27.22 9.13 23.46 0.21 -27.01 16 20 H 0.08 4.59 7.85 -2.91 -0.02 4.56 16 21 C 0.01 0.65 5.49 85.29 0.47 1.12 16 22 N -0.68 -40.27 9.01 21.84 0.20 -40.07 16 23 Si 0.97 41.86 29.56 68.60 2.03 43.89 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 27 N -0.51 -29.52 5.75 -186.38 -1.07 -30.59 16 28 C -0.08 -1.65 1.34 -51.66 -0.07 -1.72 16 29 C -0.11 -2.37 8.46 71.98 0.61 -1.76 16 30 C -0.13 -2.21 8.59 71.98 0.62 -1.60 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.06 1.47 7.57 -2.39 -0.02 1.46 16 37 H 0.40 8.18 7.19 -92.71 -0.67 7.51 16 38 H 0.42 11.51 8.71 -92.71 -0.81 10.70 16 39 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 40 H 0.14 4.77 8.06 -2.91 -0.02 4.75 16 41 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 42 H 0.27 15.05 8.29 -92.71 -0.77 14.28 16 43 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.05 1.23 7.18 -2.39 -0.02 1.21 16 46 H 0.07 0.92 6.63 -2.39 -0.02 0.91 16 47 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -76.44 385.69 3.15 -73.28 By element: Atomic # 1 Polarization: 39.48 SS G_CDS: -0.50 Total: 38.99 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 7.41 Total: -0.42 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -4.28 Total: -119.59 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -1.51 Total: -36.15 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -76.44 3.15 -73.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881149495.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.134 kcal (2) G-P(sol) polarization free energy of solvation -76.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds