Wall clock time and date at job start Tue Mar 31 2020 17:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.35577 * 2 1 4 4 C 1.54301 * 110.47923 * 237.77382 * 2 1 3 5 5 N 1.47904 * 107.08443 * 242.53490 * 4 2 1 6 6 C 1.48524 * 105.82134 * 334.52140 * 5 4 2 7 7 C 1.54602 * 110.30807 * 122.13785 * 2 1 3 8 8 H 1.08997 * 110.72128 * 22.34226 * 7 2 1 9 9 C 1.52997 * 110.72510 * 259.23115 * 7 2 1 10 10 C 1.52999 * 109.47142 * 177.45114 * 9 7 2 11 11 N 1.46504 * 109.47054 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00009 * 179.97438 * 11 10 9 13 13 O 1.21590 * 119.99818 * 0.02562 * 12 11 10 14 14 N 1.34770 * 120.00009 * 180.02562 * 12 11 10 15 15 C 1.39940 * 120.00115 * 174.74620 * 14 12 11 16 16 C 1.38962 * 120.03796 * 146.42716 * 15 14 12 17 17 C 1.38157 * 120.06517 * 179.97438 * 16 15 14 18 18 C 1.38161 * 120.14128 * 359.97438 * 17 16 15 19 19 C 1.38907 * 120.07189 * 359.97438 * 18 17 16 20 20 O 1.35752 * 120.03486 * 179.97438 * 19 18 17 21 21 C 1.34835 * 117.00106 * 5.92181 * 20 19 18 22 22 H 1.07999 * 119.99727 * 5.39255 * 21 20 19 23 23 C 1.38643 * 119.99865 * 185.40025 * 21 20 19 24 24 N 1.31560 * 120.00604 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99985 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46974 * 59.99831 * 25 23 21 27 27 H 1.48500 * 109.47409 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46991 * 300.00036 * 25 23 21 29 29 C 1.38706 * 120.03549 * 326.14913 * 15 14 12 30 30 H 1.08996 * 109.46992 * 297.86023 * 1 2 3 31 31 H 1.09006 * 109.46970 * 57.86506 * 1 2 3 32 32 H 1.09001 * 109.47141 * 177.85618 * 1 2 3 33 33 H 1.09000 * 110.02607 * 123.10256 * 4 2 1 34 34 H 1.09000 * 109.94424 * 1.91476 * 4 2 1 35 35 H 1.00905 * 110.99640 * 214.00711 * 5 4 2 36 36 H 1.09006 * 110.66573 * 280.77241 * 6 5 4 37 37 H 1.09000 * 110.81438 * 157.71483 * 6 5 4 38 38 H 1.09002 * 109.47187 * 297.45213 * 9 7 2 39 39 H 1.09004 * 109.46894 * 57.44825 * 9 7 2 40 40 H 1.09002 * 109.47161 * 300.00115 * 10 9 7 41 41 H 1.08996 * 109.47198 * 60.00006 * 10 9 7 42 42 H 0.96998 * 119.99784 * 359.97438 * 11 10 9 43 43 H 0.97003 * 119.99841 * 354.74301 * 14 12 11 44 44 H 1.07997 * 119.96725 * 359.95469 * 16 15 14 45 45 H 1.08006 * 119.92856 * 180.02562 * 17 16 15 46 46 H 1.08003 * 119.96527 * 179.97438 * 18 17 16 47 47 H 0.96994 * 120.00429 * 179.97438 * 24 23 21 48 48 H 1.08009 * 120.06940 * 0.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0698 -0.7708 -1.2228 5 7 2.8327 -1.9274 -0.7052 6 6 3.2848 -1.5383 0.6550 7 6 2.0665 -0.7713 1.2278 8 1 1.3161 -1.4659 1.6050 9 6 2.5052 0.1983 2.3270 10 6 2.9707 -0.5942 3.5501 11 7 3.3902 0.3343 4.6029 12 6 3.8412 -0.1414 5.7805 13 8 3.9004 -1.3411 5.9689 14 7 4.2266 0.7127 6.7491 15 6 4.5903 0.2240 8.0089 16 6 5.5827 0.8624 8.7427 17 6 5.9419 0.3807 9.9868 18 6 5.3157 -0.7363 10.5055 19 6 4.3221 -1.3784 9.7774 20 8 3.7077 -2.4761 10.2875 21 6 4.0196 -2.8194 11.5536 22 1 4.6619 -2.1820 12.1432 23 6 3.5160 -3.9906 12.0983 24 7 2.7333 -4.7669 11.3802 25 14 3.9487 -4.4666 13.8521 26 1 3.4804 -3.4079 14.7822 27 1 3.2894 -5.7528 14.1930 28 1 5.4210 -4.6178 13.9751 29 6 3.9565 -0.8948 8.5290 30 1 -0.3633 0.4802 0.9085 31 1 -0.3633 0.5467 -0.8703 32 1 -0.3633 -1.0269 -0.0384 33 1 2.7244 -0.1272 -1.8106 34 1 1.2406 -1.1187 -1.8388 35 1 3.6191 -2.1378 -1.3014 36 1 4.1574 -0.8875 0.5988 37 1 3.5024 -2.4200 1.2578 38 1 3.3252 0.8160 1.9606 39 1 1.6660 0.8360 2.6050 40 1 2.1508 -1.2119 3.9165 41 1 3.8098 -1.2319 3.2721 42 1 3.3433 1.2914 4.4523 43 1 4.2519 1.6663 6.5730 44 1 6.0740 1.7358 8.3400 45 1 6.7132 0.8788 10.5555 46 1 5.5989 -1.1107 11.4781 47 1 2.3813 -5.5865 11.7613 48 1 3.1820 -1.3904 7.9624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925946870.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:52 Heat of formation + Delta-G solvation = -61.273197 kcal Electronic energy + Delta-G solvation = -27491.721889 eV Core-core repulsion = 23545.755723 eV Total energy + Delta-G solvation = -3945.966166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.69725 -40.49062 -40.00184 -38.36429 -36.41501 -35.54639 -34.25367 -33.48839 -32.56964 -31.10230 -30.00911 -28.08895 -27.29496 -26.45647 -24.46590 -23.61595 -23.04766 -22.03785 -21.69012 -20.76392 -19.96499 -19.60681 -18.87438 -17.50322 -17.17072 -16.98132 -16.71604 -16.43808 -16.21822 -15.97831 -15.62928 -15.58743 -15.35071 -15.26642 -14.68230 -14.41046 -14.31937 -14.23563 -14.08258 -13.57617 -13.33617 -13.19544 -13.03951 -12.91734 -12.81177 -12.62324 -12.45602 -12.34812 -12.15429 -12.14683 -11.72407 -11.55065 -11.50930 -11.35062 -11.32770 -11.01076 -10.74351 -10.18932 -9.46488 -9.28768 -8.82167 -8.45123 -6.14946 0.48632 0.73208 1.34746 1.46982 1.52320 1.54520 2.05737 2.19409 2.85650 3.08816 3.20330 3.34117 3.57778 3.60641 3.66379 3.90059 4.12061 4.16262 4.19808 4.31786 4.39674 4.43933 4.44802 4.50408 4.63274 4.67186 4.69893 4.72433 4.76139 4.87358 4.91362 4.97477 5.04987 5.09960 5.13018 5.18591 5.20866 5.28796 5.39018 5.41901 5.44529 5.49144 5.65871 5.76679 5.86072 5.99997 6.04727 6.24095 6.41162 6.98189 7.01621 7.49635 7.81852 8.78757 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016487 B = 0.001988 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.884417 B =14083.800593 C =15226.238976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 H 0.092 0.908 4 C 0.040 3.960 5 N -0.690 5.690 6 C 0.038 3.962 7 C -0.085 4.085 8 H 0.071 0.929 9 C -0.104 4.104 10 C 0.136 3.864 11 N -0.720 5.720 12 C 0.691 3.309 13 O -0.621 6.621 14 N -0.665 5.665 15 C 0.204 3.796 16 C -0.205 4.205 17 C -0.047 4.047 18 C -0.257 4.257 19 C 0.126 3.874 20 O -0.237 6.237 21 C -0.413 4.413 22 H 0.107 0.893 23 C -0.030 4.030 24 N -0.926 5.926 25 Si 1.025 2.975 26 H -0.253 1.253 27 H -0.274 1.274 28 H -0.255 1.255 29 C -0.215 4.215 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.344 0.656 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.044 0.956 41 H 0.054 0.946 42 H 0.417 0.583 43 H 0.428 0.572 44 H 0.165 0.835 45 H 0.161 0.839 46 H 0.123 0.877 47 H 0.272 0.728 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.049 19.015 -22.429 29.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.110 0.890 4 C -0.089 4.089 5 N -0.320 5.320 6 C -0.091 4.091 7 C -0.104 4.104 8 H 0.089 0.911 9 C -0.142 4.142 10 C 0.012 3.988 11 N -0.378 5.378 12 C 0.391 3.609 13 O -0.500 6.500 14 N -0.314 5.314 15 C 0.109 3.891 16 C -0.226 4.226 17 C -0.065 4.065 18 C -0.277 4.277 19 C 0.075 3.925 20 O -0.143 6.143 21 C -0.489 4.489 22 H 0.124 0.876 23 C -0.226 4.226 24 N -0.564 5.564 25 Si 0.843 3.157 26 H -0.177 1.177 27 H -0.198 1.198 28 H -0.179 1.179 29 C -0.237 4.237 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.160 0.840 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.255 0.745 43 H 0.268 0.732 44 H 0.183 0.817 45 H 0.179 0.821 46 H 0.141 0.859 47 H 0.081 0.919 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.199 17.196 -22.266 28.159 hybrid contribution 0.469 0.287 0.334 0.643 sum 1.668 17.483 -21.932 28.097 Atomic orbital electron populations 1.21812 0.94045 1.01665 1.02363 1.22084 0.96670 0.99438 0.93022 0.88989 1.22855 0.98160 0.91054 0.96795 1.62988 1.27116 1.37849 1.04018 1.23129 0.96545 0.98908 0.90524 1.22066 0.97036 0.96671 0.94665 0.91079 1.21710 1.02649 0.97685 0.92133 1.21287 0.98942 0.92044 0.86531 1.44862 1.68894 1.11231 1.12789 1.16284 0.78429 0.84870 0.81305 1.91029 1.61410 1.16214 1.81335 1.42242 1.69651 1.10628 1.08924 1.17072 0.93894 0.93723 0.84433 1.20858 0.99832 1.05125 0.96787 1.21038 0.97443 0.93200 0.94835 1.21318 1.01943 1.01593 1.02831 1.19675 0.92055 0.87734 0.92993 1.83973 1.60354 1.39385 1.30603 1.21868 1.32697 1.07983 0.86330 0.87585 1.26746 0.95843 0.94471 1.05571 1.70227 1.32811 1.13688 1.39701 0.84576 0.79241 0.78161 0.73720 1.17748 1.19845 1.17923 1.20056 1.06016 1.02241 0.95355 0.92141 0.91595 0.93466 0.93000 0.90675 0.83982 0.92835 0.91496 0.89128 0.89320 0.93713 0.92727 0.74510 0.73200 0.81719 0.82110 0.85879 0.91924 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.90 71.98 0.64 -0.83 16 2 C -0.09 -0.96 3.18 -9.81 -0.03 -0.99 16 3 H 0.09 0.68 7.85 -2.39 -0.02 0.66 16 4 C 0.04 0.46 7.19 86.55 0.62 1.09 16 5 N -0.69 -10.21 7.51 -501.64 -3.77 -13.98 16 6 C 0.04 0.57 6.28 86.65 0.54 1.11 16 7 C -0.08 -1.13 2.60 -9.59 -0.02 -1.16 16 8 H 0.07 1.23 7.86 -2.39 -0.02 1.21 16 9 C -0.10 -1.13 4.70 30.59 0.14 -0.99 16 10 C 0.14 2.71 5.54 86.38 0.48 3.19 16 11 N -0.72 -14.38 5.56 -478.54 -2.66 -17.04 16 12 C 0.69 21.99 8.30 179.06 1.49 23.47 16 13 O -0.62 -28.33 14.06 -4.00 -0.06 -28.39 16 14 N -0.66 -18.11 5.35 -317.24 -1.70 -19.81 16 15 C 0.20 7.51 6.27 38.13 0.24 7.75 16 16 C -0.21 -6.15 9.96 22.42 0.22 -5.92 16 17 C -0.05 -1.55 10.03 22.23 0.22 -1.32 16 18 C -0.26 -11.52 9.13 22.41 0.20 -11.32 16 19 C 0.13 6.89 6.64 22.56 0.15 7.04 16 20 O -0.24 -15.48 9.76 -22.81 -0.22 -15.70 16 21 C -0.41 -25.29 9.44 67.92 0.64 -24.65 16 22 H 0.11 5.83 5.29 -2.91 -0.02 5.82 16 23 C -0.03 -1.77 5.49 84.83 0.47 -1.31 16 24 N -0.93 -60.36 13.67 21.61 0.30 -60.06 16 25 Si 1.02 44.54 29.55 68.60 2.03 46.57 16 26 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 27 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 28 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 29 C -0.21 -10.70 8.60 22.51 0.19 -10.51 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.07 0.90 7.70 -2.39 -0.02 0.88 16 35 H 0.34 4.10 8.92 -89.69 -0.80 3.30 16 36 H 0.05 0.68 7.98 -2.38 -0.02 0.66 16 37 H 0.07 1.24 8.07 -2.39 -0.02 1.22 16 38 H 0.09 0.67 8.05 -2.39 -0.02 0.65 16 39 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.05 1.25 7.53 -2.39 -0.02 1.24 16 42 H 0.42 4.41 8.49 -92.71 -0.79 3.62 16 43 H 0.43 6.77 8.83 -92.71 -0.82 5.95 16 44 H 0.17 3.21 8.06 -2.91 -0.02 3.18 16 45 H 0.16 3.82 8.06 -2.91 -0.02 3.79 16 46 H 0.12 5.51 5.71 -2.91 -0.02 5.49 16 47 H 0.27 16.22 8.31 -92.71 -0.77 15.45 16 48 H 0.09 5.26 6.45 -2.91 -0.02 5.24 16 Total: -1.00 -89.98 391.06 -1.28 -91.26 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: -1.40 Total: 32.48 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 6.20 Total: -15.34 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -7.83 Total: -110.89 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -0.28 Total: -44.09 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -89.98 -1.28 -91.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925946870.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.991 kcal (2) G-P(sol) polarization free energy of solvation -89.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds