Wall clock time and date at job start Tue Mar 31 2020 17:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.49393 * 2 1 4 4 C 1.53198 * 109.49235 * 239.93784 * 2 1 3 5 5 N 1.46928 * 108.77032 * 185.41086 * 4 2 1 6 6 C 1.34773 * 120.62920 * 233.33125 * 5 4 2 7 7 O 1.21593 * 119.99754 * 174.76536 * 6 5 4 8 8 N 1.34777 * 120.00317 * 354.76806 * 6 5 4 9 9 C 1.39940 * 120.00233 * 184.50691 * 8 6 5 10 10 C 1.38957 * 120.03397 * 144.34327 * 9 8 6 11 11 C 1.38157 * 120.06787 * 179.97438 * 10 9 8 12 12 C 1.38170 * 120.13427 * 0.02562 * 11 10 9 13 13 C 1.38904 * 120.07315 * 359.97438 * 12 11 10 14 14 O 1.35751 * 120.02999 * 180.02562 * 13 12 11 15 15 C 1.34827 * 117.00527 * 354.48262 * 14 13 12 16 16 H 1.08002 * 119.99687 * 5.10132 * 15 14 13 17 17 C 1.38654 * 120.00184 * 185.10258 * 15 14 13 18 18 N 1.31560 * 120.00070 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99973 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47010 * 90.00159 * 19 17 15 21 21 H 1.48493 * 109.47613 * 210.00265 * 19 17 15 22 22 H 1.48504 * 109.47333 * 330.00233 * 19 17 15 23 23 C 1.38702 * 120.03300 * 324.07438 * 9 8 6 24 24 C 1.46932 * 118.73856 * 53.60984 * 5 4 2 25 25 C 1.53183 * 108.77555 * 306.39119 * 24 5 4 26 26 C 1.53039 * 109.49655 * 120.10186 * 2 1 3 27 27 H 1.08998 * 109.46224 * 61.29904 * 26 2 1 28 28 C 1.52994 * 109.45896 * 301.31799 * 26 2 1 29 29 N 1.46907 * 109.47274 * 175.00373 * 28 26 2 30 30 H 1.09006 * 109.46977 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46898 * 300.05816 * 1 2 3 32 32 H 1.09000 * 109.47479 * 60.06186 * 1 2 3 33 33 H 1.08993 * 109.58726 * 65.63032 * 4 2 1 34 34 H 1.08992 * 109.58676 * 305.19514 * 4 2 1 35 35 H 0.97001 * 119.99810 * 4.51424 * 8 6 5 36 36 H 1.07997 * 119.96767 * 359.96393 * 10 9 8 37 37 H 1.07999 * 119.93271 * 179.97438 * 11 10 9 38 38 H 1.08010 * 119.96150 * 179.97438 * 12 11 10 39 39 H 0.96996 * 119.99767 * 179.97438 * 18 17 15 40 40 H 1.08005 * 120.07647 * 0.02562 * 23 9 8 41 41 H 1.09009 * 109.58405 * 66.17753 * 24 5 4 42 42 H 1.09000 * 109.58419 * 186.59965 * 24 5 4 43 43 H 1.08998 * 109.49922 * 294.68398 * 25 24 5 44 44 H 1.08996 * 109.52766 * 174.60323 * 25 24 5 45 45 H 1.08998 * 109.47163 * 295.00412 * 28 26 2 46 46 H 1.09003 * 109.47414 * 55.00825 * 28 26 2 47 47 H 1.00895 * 111.00455 * 180.02562 * 29 28 26 48 48 H 1.00902 * 110.99885 * 303.96057 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2499 5 7 3.5046 -0.8287 -1.1700 6 6 4.2808 -0.3904 -2.1808 7 8 5.4911 -0.3950 -2.0639 8 7 3.7155 0.0533 -3.3210 9 6 4.5212 0.4196 -4.4050 10 6 4.0962 0.1679 -5.7038 11 6 4.8909 0.5297 -6.7745 12 6 6.1103 1.1422 -6.5576 13 6 6.5407 1.3965 -5.2616 14 8 7.7387 1.9987 -5.0495 15 6 8.5123 2.2208 -6.1312 16 1 8.1362 1.9984 -7.1189 17 6 9.7908 2.7345 -5.9756 18 7 10.5458 2.9506 -7.0310 19 14 10.4410 3.1197 -4.2673 20 1 11.1237 1.9217 -3.7158 21 1 11.4053 4.2461 -4.3469 22 1 9.3109 3.4973 -3.3809 23 6 5.7423 1.0393 -4.1842 24 6 4.1053 -1.4267 0.0302 25 6 3.5709 -0.6955 1.2656 26 6 2.0408 -0.7235 1.2481 27 1 1.6968 -1.7577 1.2347 28 6 1.5041 -0.0239 2.4983 29 7 1.8946 -0.7862 3.6919 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8895 32 1 -0.3634 0.5129 -0.8905 33 1 1.7637 -0.1573 -2.1389 34 1 1.6052 -1.7212 -1.2986 35 1 2.7502 0.1187 -3.3903 36 1 3.1439 -0.3112 -5.8765 37 1 4.5586 0.3327 -7.7830 38 1 6.7295 1.4235 -7.3967 39 1 11.4400 3.3104 -6.9221 40 1 6.0731 1.2395 -3.1757 41 1 3.8375 -2.4819 0.0858 42 1 5.1896 -1.3246 -0.0144 43 1 3.9159 0.3384 1.2541 44 1 3.9335 -1.1899 2.1668 45 1 1.9190 0.9823 2.5580 46 1 0.4170 0.0341 2.4439 47 1 1.5513 -0.3443 4.5315 48 1 1.5766 -1.7418 3.6306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925947753.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:22 Heat of formation + Delta-G solvation = -21.473096 kcal Electronic energy + Delta-G solvation = -28725.415563 eV Core-core repulsion = 24781.175259 eV Total energy + Delta-G solvation = -3944.240304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.84263 -39.30692 -38.44862 -36.68111 -35.28672 -34.23088 -33.31465 -32.30519 -31.74283 -29.55010 -28.50687 -27.17672 -26.62195 -25.14266 -23.41034 -22.44914 -21.99748 -21.17510 -20.52052 -19.67517 -18.47979 -17.90540 -17.27151 -16.29097 -16.04398 -15.65580 -15.46561 -15.14281 -14.95380 -14.92773 -14.67116 -14.14068 -13.98046 -13.76487 -13.61420 -13.43872 -13.36997 -13.01223 -12.79632 -12.51716 -12.36863 -12.25060 -12.24540 -12.13404 -11.57401 -11.37608 -11.18329 -11.07949 -10.93567 -10.76431 -10.76235 -10.72345 -10.18275 -9.89257 -9.65294 -9.25219 -9.08338 -8.79679 -8.74331 -7.71034 -7.24313 -6.34233 -4.00387 2.05793 2.30054 2.57736 3.27071 3.30177 3.35910 3.51205 3.76496 3.99720 4.27692 4.32986 4.33210 4.51648 4.57814 4.62375 4.91960 4.96736 5.00659 5.06294 5.07970 5.12537 5.18184 5.20267 5.28738 5.42498 5.44161 5.59569 5.62358 5.73440 5.74464 5.76664 5.79564 5.91613 6.12499 6.13151 6.18322 6.28148 6.40681 6.54099 6.66487 6.77991 6.96560 6.99497 7.13581 7.19573 7.39902 7.67256 7.88110 7.94795 8.11018 8.65039 9.01738 9.65773 10.73283 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016024 B = 0.002685 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.930433 B =10425.986594 C =11721.945520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 H 0.078 0.922 4 C 0.118 3.882 5 N -0.629 5.629 6 C 0.703 3.297 7 O -0.561 6.561 8 N -0.683 5.683 9 C 0.191 3.809 10 C -0.229 4.229 11 C -0.060 4.060 12 C -0.234 4.234 13 C 0.173 3.827 14 O -0.214 6.214 15 C -0.387 4.387 16 H 0.107 0.893 17 C 0.064 3.936 18 N -0.881 5.881 19 Si 0.904 3.096 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.185 4.185 24 C 0.127 3.873 25 C -0.121 4.121 26 C -0.078 4.078 27 H 0.070 0.930 28 C 0.063 3.937 29 N -0.850 5.850 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.400 0.600 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.279 0.721 40 H 0.134 0.866 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.031 0.969 47 H 0.341 0.659 48 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.124 -8.422 16.765 30.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.123 4.123 3 H 0.097 0.903 4 C -0.006 4.006 5 N -0.368 5.368 6 C 0.405 3.595 7 O -0.436 6.436 8 N -0.332 5.332 9 C 0.097 3.903 10 C -0.250 4.250 11 C -0.079 4.079 12 C -0.253 4.253 13 C 0.120 3.880 14 O -0.119 6.119 15 C -0.463 4.463 16 H 0.125 0.875 17 C -0.139 4.139 18 N -0.519 5.519 19 Si 0.729 3.271 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.183 1.183 23 C -0.207 4.207 24 C 0.004 3.996 25 C -0.160 4.160 26 C -0.097 4.097 27 H 0.088 0.912 28 C -0.068 4.068 29 N -0.379 5.379 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.237 0.763 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.151 0.849 39 H 0.089 0.911 40 H 0.152 0.848 41 H 0.081 0.919 42 H 0.114 0.886 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.089 0.911 46 H 0.049 0.951 47 H 0.153 0.847 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -22.135 -8.124 16.788 28.945 hybrid contribution -1.274 0.082 0.563 1.395 sum -23.409 -8.042 17.351 30.227 Atomic orbital electron populations 1.21870 0.94447 1.02095 1.02289 1.21531 0.95759 1.00457 0.94578 0.90347 1.21658 0.80396 1.00581 0.97951 1.47284 1.05630 1.65346 1.18495 1.15870 0.85344 0.78192 0.80087 1.90995 1.11779 1.60289 1.80510 1.42669 1.09435 1.68492 1.12600 1.16940 0.91540 0.96579 0.85264 1.20307 1.02402 1.11386 0.90890 1.20533 0.93457 0.96442 0.97452 1.21290 0.98655 1.08061 0.97326 1.18873 0.86254 0.90378 0.92448 1.83586 1.24694 1.67418 1.36200 1.20782 0.95724 1.43741 0.86047 0.87548 1.24448 0.94595 0.95877 0.99012 1.69649 1.09874 1.43226 1.29158 0.86197 0.79154 0.78313 0.83395 1.19807 1.20866 1.18292 1.20178 0.95624 1.06037 0.98833 1.21534 1.00027 0.95683 0.82347 1.21898 0.94354 1.01809 0.97907 1.21155 0.96197 0.99298 0.93062 0.91182 1.21930 0.97194 0.97828 0.89831 1.58666 1.68504 1.06362 1.04399 0.92461 0.92022 0.92244 0.90543 0.91270 0.76297 0.87335 0.86777 0.84866 0.91129 0.84816 0.91941 0.88563 0.91635 0.89478 0.91050 0.95102 0.84685 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 8.82 37.16 0.33 -0.36 16 2 C -0.10 -0.67 2.41 -90.49 -0.22 -0.89 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 4 C 0.12 0.90 5.67 -3.71 -0.02 0.88 16 5 N -0.63 -7.25 2.97 -178.50 -0.53 -7.78 16 6 C 0.70 11.30 8.14 -86.92 -0.71 10.59 16 7 O -0.56 -11.74 13.25 5.28 0.07 -11.67 16 8 N -0.68 -10.08 5.24 -14.24 -0.07 -10.15 16 9 C 0.19 3.54 6.28 -83.72 -0.53 3.02 16 10 C -0.23 -3.88 9.96 -39.34 -0.39 -4.27 16 11 C -0.06 -1.10 10.03 -39.64 -0.40 -1.50 16 12 C -0.23 -5.22 9.17 -39.36 -0.36 -5.58 16 13 C 0.17 4.30 6.64 -39.13 -0.26 4.04 16 14 O -0.21 -6.03 8.58 0.05 0.00 -6.03 16 15 C -0.39 -11.34 9.95 30.89 0.31 -11.04 16 16 H 0.11 3.14 5.43 -52.49 -0.29 2.85 16 17 C 0.06 1.85 5.49 -17.51 -0.10 1.76 16 18 N -0.88 -26.14 13.96 55.48 0.77 -25.36 16 19 Si 0.90 22.87 28.62 -169.99 -4.86 18.01 16 20 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.26 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.19 -4.19 8.63 -39.21 -0.34 -4.53 16 24 C 0.13 1.34 6.44 -3.71 -0.02 1.32 16 25 C -0.12 -1.05 5.26 -26.61 -0.14 -1.19 16 26 C -0.08 -0.50 1.84 -90.58 -0.17 -0.67 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 C 0.06 0.36 5.93 -3.82 -0.02 0.34 16 29 N -0.85 -4.59 9.05 -10.37 -0.09 -4.68 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.27 6.30 -51.92 -0.33 -0.06 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.51 5.65 -51.93 -0.29 0.22 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.40 4.30 6.31 -40.82 -0.26 4.04 16 36 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.13 3.08 5.63 -52.48 -0.30 2.79 16 39 H 0.28 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.13 3.23 6.29 -52.48 -0.33 2.90 16 41 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 42 H 0.10 1.27 7.00 -51.93 -0.36 0.90 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 0.74 7.71 -51.93 -0.40 0.34 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.03 0.15 6.14 -51.93 -0.32 -0.17 16 47 H 0.34 1.42 9.08 -39.29 -0.36 1.06 16 48 H 0.34 1.46 8.99 -39.29 -0.35 1.10 16 LS Contribution 377.78 15.07 5.69 5.69 Total: -1.00 -34.16 377.78 -9.01 -43.17 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.94 Total: 6.89 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -3.04 Total: -8.08 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.08 Total: -47.98 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.07 Total: -17.69 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.86 Total: 18.01 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.16 -9.01 -43.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925947753.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.695 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds