Wall clock time and date at job start Tue Mar 31 2020 17:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.49393 * 2 1 4 4 C 1.53198 * 109.49235 * 239.93784 * 2 1 3 5 5 N 1.46928 * 108.77032 * 185.41086 * 4 2 1 6 6 C 1.34773 * 120.62920 * 233.33125 * 5 4 2 7 7 O 1.21593 * 119.99754 * 174.76536 * 6 5 4 8 8 N 1.34777 * 120.00317 * 354.76806 * 6 5 4 9 9 C 1.39940 * 120.00233 * 184.50691 * 8 6 5 10 10 C 1.38957 * 120.03397 * 144.34327 * 9 8 6 11 11 C 1.38157 * 120.06787 * 179.97438 * 10 9 8 12 12 C 1.38170 * 120.13427 * 0.02562 * 11 10 9 13 13 C 1.38904 * 120.07315 * 359.97438 * 12 11 10 14 14 O 1.35751 * 120.02999 * 180.02562 * 13 12 11 15 15 C 1.34827 * 117.00527 * 354.48262 * 14 13 12 16 16 H 1.08002 * 119.99687 * 5.10132 * 15 14 13 17 17 C 1.38654 * 120.00184 * 185.10258 * 15 14 13 18 18 N 1.31560 * 120.00070 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99973 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47010 * 90.00159 * 19 17 15 21 21 H 1.48493 * 109.47613 * 210.00265 * 19 17 15 22 22 H 1.48504 * 109.47333 * 330.00233 * 19 17 15 23 23 C 1.38702 * 120.03300 * 324.07438 * 9 8 6 24 24 C 1.46932 * 118.73856 * 53.60984 * 5 4 2 25 25 C 1.53183 * 108.77555 * 306.39119 * 24 5 4 26 26 C 1.53039 * 109.49655 * 120.10186 * 2 1 3 27 27 H 1.08998 * 109.46224 * 61.29904 * 26 2 1 28 28 C 1.52994 * 109.45896 * 301.31799 * 26 2 1 29 29 N 1.46907 * 109.47274 * 175.00373 * 28 26 2 30 30 H 1.09006 * 109.46977 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46898 * 300.05816 * 1 2 3 32 32 H 1.09000 * 109.47479 * 60.06186 * 1 2 3 33 33 H 1.08993 * 109.58726 * 65.63032 * 4 2 1 34 34 H 1.08992 * 109.58676 * 305.19514 * 4 2 1 35 35 H 0.97001 * 119.99810 * 4.51424 * 8 6 5 36 36 H 1.07997 * 119.96767 * 359.96393 * 10 9 8 37 37 H 1.07999 * 119.93271 * 179.97438 * 11 10 9 38 38 H 1.08010 * 119.96150 * 179.97438 * 12 11 10 39 39 H 0.96996 * 119.99767 * 179.97438 * 18 17 15 40 40 H 1.08005 * 120.07647 * 0.02562 * 23 9 8 41 41 H 1.09009 * 109.58405 * 66.17753 * 24 5 4 42 42 H 1.09000 * 109.58419 * 186.59965 * 24 5 4 43 43 H 1.08998 * 109.49922 * 294.68398 * 25 24 5 44 44 H 1.08996 * 109.52766 * 174.60323 * 25 24 5 45 45 H 1.08998 * 109.47163 * 295.00412 * 28 26 2 46 46 H 1.09003 * 109.47414 * 55.00825 * 28 26 2 47 47 H 1.00895 * 111.00455 * 180.02562 * 29 28 26 48 48 H 1.00902 * 110.99885 * 303.96057 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2499 5 7 3.5046 -0.8287 -1.1700 6 6 4.2808 -0.3904 -2.1808 7 8 5.4911 -0.3950 -2.0639 8 7 3.7155 0.0533 -3.3210 9 6 4.5212 0.4196 -4.4050 10 6 4.0962 0.1679 -5.7038 11 6 4.8909 0.5297 -6.7745 12 6 6.1103 1.1422 -6.5576 13 6 6.5407 1.3965 -5.2616 14 8 7.7387 1.9987 -5.0495 15 6 8.5123 2.2208 -6.1312 16 1 8.1362 1.9984 -7.1189 17 6 9.7908 2.7345 -5.9756 18 7 10.5458 2.9506 -7.0310 19 14 10.4410 3.1197 -4.2673 20 1 11.1237 1.9217 -3.7158 21 1 11.4053 4.2461 -4.3469 22 1 9.3109 3.4973 -3.3809 23 6 5.7423 1.0393 -4.1842 24 6 4.1053 -1.4267 0.0302 25 6 3.5709 -0.6955 1.2656 26 6 2.0408 -0.7235 1.2481 27 1 1.6968 -1.7577 1.2347 28 6 1.5041 -0.0239 2.4983 29 7 1.8946 -0.7862 3.6919 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8895 32 1 -0.3634 0.5129 -0.8905 33 1 1.7637 -0.1573 -2.1389 34 1 1.6052 -1.7212 -1.2986 35 1 2.7502 0.1187 -3.3903 36 1 3.1439 -0.3112 -5.8765 37 1 4.5586 0.3327 -7.7830 38 1 6.7295 1.4235 -7.3967 39 1 11.4400 3.3104 -6.9221 40 1 6.0731 1.2395 -3.1757 41 1 3.8375 -2.4819 0.0858 42 1 5.1896 -1.3246 -0.0144 43 1 3.9159 0.3384 1.2541 44 1 3.9335 -1.1899 2.1668 45 1 1.9190 0.9823 2.5580 46 1 0.4170 0.0341 2.4439 47 1 1.5513 -0.3443 4.5315 48 1 1.5766 -1.7418 3.6306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925947753.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:21 Heat of formation + Delta-G solvation = -46.111982 kcal Electronic energy + Delta-G solvation = -28726.483985 eV Core-core repulsion = 24781.175259 eV Total energy + Delta-G solvation = -3945.308727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.00946 -40.78625 -39.64143 -38.28102 -36.13612 -35.61133 -34.44571 -33.93721 -32.57419 -31.23137 -29.97988 -27.74560 -27.42142 -27.17556 -24.53895 -23.39679 -23.09758 -22.62420 -21.39192 -20.69400 -19.92856 -19.64155 -18.86996 -17.45994 -16.95565 -16.77668 -16.69923 -16.46008 -16.06359 -15.81977 -15.74674 -15.71274 -15.57719 -15.19568 -14.67647 -14.41656 -14.33601 -14.20533 -14.08629 -13.92891 -13.65577 -13.30688 -13.13380 -12.92427 -12.89607 -12.76553 -12.65788 -12.50345 -12.06985 -11.96614 -11.73829 -11.55867 -11.44641 -11.36949 -11.25805 -10.94654 -10.87888 -9.78404 -9.46544 -9.34160 -8.89270 -8.51846 -6.23198 0.43480 0.65431 1.25827 1.30915 1.44683 1.48334 1.99406 2.25993 2.69692 2.76585 3.09480 3.19746 3.53073 3.70062 3.75673 3.96523 4.07396 4.12249 4.28965 4.32297 4.35542 4.40140 4.46246 4.56851 4.59730 4.63868 4.64593 4.72666 4.75339 4.82950 4.88895 4.97656 5.02556 5.05035 5.16347 5.22113 5.32497 5.35978 5.40300 5.44709 5.52944 5.57760 5.68117 5.79146 5.86496 5.91697 6.23331 6.29982 6.65499 6.80833 6.83513 7.42647 7.60604 8.59673 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016024 B = 0.002685 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.930433 B =10425.986594 C =11721.945520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.059 0.941 4 C 0.110 3.890 5 N -0.618 5.618 6 C 0.695 3.305 7 O -0.618 6.618 8 N -0.666 5.666 9 C 0.199 3.801 10 C -0.194 4.194 11 C -0.050 4.050 12 C -0.249 4.249 13 C 0.134 3.866 14 O -0.250 6.250 15 C -0.397 4.397 16 H 0.089 0.911 17 C 0.015 3.985 18 N -0.919 5.919 19 Si 0.962 3.038 20 H -0.270 1.270 21 H -0.259 1.259 22 H -0.273 1.273 23 C -0.203 4.203 24 C 0.124 3.876 25 C -0.111 4.111 26 C -0.072 4.072 27 H 0.086 0.914 28 C 0.067 3.933 29 N -0.860 5.860 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.423 0.577 36 H 0.166 0.834 37 H 0.158 0.842 38 H 0.115 0.885 39 H 0.285 0.715 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.040 0.960 44 H 0.089 0.911 45 H 0.055 0.945 46 H 0.047 0.953 47 H 0.348 0.652 48 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.781 -10.287 17.577 35.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 H 0.078 0.922 4 C -0.012 4.012 5 N -0.355 5.355 6 C 0.397 3.603 7 O -0.498 6.498 8 N -0.318 5.318 9 C 0.104 3.896 10 C -0.215 4.215 11 C -0.068 4.068 12 C -0.269 4.269 13 C 0.085 3.915 14 O -0.158 6.158 15 C -0.473 4.473 16 H 0.107 0.893 17 C -0.184 4.184 18 N -0.560 5.560 19 Si 0.785 3.215 20 H -0.196 1.196 21 H -0.183 1.183 22 H -0.198 1.198 23 C -0.225 4.225 24 C 0.001 3.999 25 C -0.150 4.150 26 C -0.091 4.091 27 H 0.104 0.896 28 C -0.064 4.064 29 N -0.392 5.392 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.265 0.735 36 H 0.183 0.817 37 H 0.176 0.824 38 H 0.133 0.867 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.105 0.895 42 H 0.080 0.920 43 H 0.058 0.942 44 H 0.108 0.892 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.161 0.839 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -26.912 -10.014 17.634 33.697 hybrid contribution -0.180 0.480 0.379 0.637 sum -27.092 -9.534 18.012 33.902 Atomic orbital electron populations 1.21825 0.92294 1.03122 1.02836 1.21478 0.97348 0.99150 0.93896 0.92230 1.22045 0.77446 1.02538 0.99140 1.47356 1.07249 1.63699 1.17177 1.16156 0.84965 0.78205 0.81000 1.90977 1.14658 1.62506 1.81623 1.42443 1.10212 1.67755 1.11370 1.17083 0.90370 0.94789 0.87367 1.20892 1.03550 1.07972 0.89044 1.21016 0.91422 0.94181 1.00219 1.21353 1.00520 1.09349 0.95630 1.19369 0.85860 0.91992 0.94324 1.83536 1.26415 1.70179 1.35676 1.20779 0.96448 1.44055 0.86027 0.89316 1.25148 0.94803 0.96100 1.02341 1.69708 1.10574 1.45046 1.30624 0.85356 0.78342 0.78791 0.79022 1.19567 1.18326 1.19807 1.20193 0.97525 1.07659 0.97097 1.21623 0.98252 0.97225 0.82761 1.21790 0.96379 0.99898 0.96924 1.21123 0.94013 1.00338 0.93600 0.89587 1.21842 0.97947 0.96920 0.89654 1.58637 1.68953 1.06962 1.04600 0.91127 0.91673 0.91632 0.89218 0.88629 0.73468 0.81664 0.82411 0.86727 0.90530 0.87416 0.89543 0.92050 0.94155 0.89243 0.92685 0.93465 0.83904 0.83974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 8.82 71.98 0.63 -0.10 16 2 C -0.10 -0.98 2.41 -10.71 -0.03 -1.01 16 3 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 4 C 0.11 1.26 5.67 86.36 0.49 1.75 16 5 N -0.62 -13.26 2.97 -836.90 -2.49 -15.74 16 6 C 0.69 21.89 8.14 179.06 1.46 23.34 16 7 O -0.62 -26.97 13.25 -4.01 -0.05 -27.03 16 8 N -0.67 -17.97 5.24 -317.23 -1.66 -19.63 16 9 C 0.20 7.02 6.28 38.13 0.24 7.26 16 10 C -0.19 -5.66 9.96 22.42 0.22 -5.44 16 11 C -0.05 -1.67 10.03 22.23 0.22 -1.44 16 12 C -0.25 -11.29 9.17 22.41 0.21 -11.09 16 13 C 0.13 6.98 6.64 22.56 0.15 7.13 16 14 O -0.25 -15.05 8.58 -22.73 -0.20 -15.24 16 15 C -0.40 -24.74 9.95 67.92 0.68 -24.06 16 16 H 0.09 5.64 5.43 -2.91 -0.02 5.62 16 17 C 0.01 0.90 5.49 84.83 0.47 1.37 16 18 N -0.92 -56.73 13.96 21.61 0.30 -56.43 16 19 Si 0.96 49.35 28.62 68.60 1.96 51.31 16 20 H -0.27 -13.59 7.11 99.48 0.71 -12.89 16 21 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 22 H -0.27 -14.47 7.11 99.48 0.71 -13.76 16 23 C -0.20 -9.48 8.63 22.51 0.19 -9.28 16 24 C 0.12 2.55 6.44 86.36 0.56 3.11 16 25 C -0.11 -1.86 5.26 30.67 0.16 -1.70 16 26 C -0.07 -0.75 1.84 -10.77 -0.02 -0.77 16 27 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 28 C 0.07 0.63 5.93 86.30 0.51 1.14 16 29 N -0.86 -7.58 9.05 -186.71 -1.69 -9.27 16 30 H 0.07 0.22 8.14 -2.38 -0.02 0.20 16 31 H 0.06 0.33 6.30 -2.38 -0.02 0.31 16 32 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.09 0.79 5.65 -2.39 -0.01 0.78 16 34 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.42 7.20 6.31 -92.71 -0.59 6.61 16 36 H 0.17 3.13 8.06 -2.91 -0.02 3.10 16 37 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 38 H 0.11 5.59 5.63 -2.91 -0.02 5.58 16 39 H 0.28 16.14 8.31 -92.71 -0.77 15.37 16 40 H 0.11 5.57 6.29 -2.91 -0.02 5.55 16 41 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.06 1.71 7.00 -2.39 -0.02 1.70 16 43 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.09 1.46 7.71 -2.39 -0.02 1.44 16 45 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.05 0.31 6.14 -2.39 -0.01 0.30 16 47 H 0.35 2.27 9.08 -89.70 -0.81 1.46 16 48 H 0.35 2.08 8.99 -89.69 -0.81 1.27 16 Total: -1.00 -82.41 377.78 1.13 -81.28 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -1.19 Total: 20.54 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 6.14 Total: -9.79 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -5.54 Total: -101.07 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -0.25 Total: -42.27 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 1.96 Total: 51.31 kcal Total: -82.41 1.13 -81.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925947753.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.167 kcal (2) G-P(sol) polarization free energy of solvation -82.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds