Wall clock time and date at job start Tue Mar 31 2020 17:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.52789 * 2 1 4 4 C 1.53193 * 109.49936 * 120.08221 * 2 1 3 5 5 N 1.46921 * 108.77606 * 65.31524 * 4 2 1 6 6 C 1.34777 * 120.63263 * 233.58781 * 5 4 2 7 7 O 1.21585 * 119.99912 * 354.96941 * 6 5 4 8 8 N 1.34773 * 120.00232 * 174.97140 * 6 5 4 9 9 C 1.39944 * 120.00165 * 184.61003 * 8 6 5 10 10 C 1.38953 * 120.03903 * 144.32302 * 9 8 6 11 11 C 1.38156 * 120.07154 * 179.97438 * 10 9 8 12 12 C 1.38172 * 120.13717 * 0.02562 * 11 10 9 13 13 C 1.38915 * 120.06676 * 359.97438 * 12 11 10 14 14 O 1.35748 * 120.03112 * 180.02562 * 13 12 11 15 15 C 1.34833 * 117.00248 * 354.44643 * 14 13 12 16 16 H 1.08001 * 119.99906 * 5.09514 * 15 14 13 17 17 C 1.38654 * 120.00011 * 185.09771 * 15 14 13 18 18 N 1.31553 * 119.99933 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99849 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47545 * 89.99989 * 19 17 15 21 21 H 1.48505 * 109.46838 * 209.99739 * 19 17 15 22 22 H 1.48504 * 109.47304 * 329.99783 * 19 17 15 23 23 C 1.38711 * 120.03090 * 324.04130 * 9 8 6 24 24 C 1.46928 * 118.73892 * 53.61315 * 5 4 2 25 25 C 1.53197 * 108.77099 * 306.38973 * 24 5 4 26 26 C 1.53034 * 109.31448 * 54.63805 * 25 24 5 27 27 H 1.09001 * 109.45151 * 58.64263 * 26 25 24 28 28 C 1.53003 * 109.46060 * 178.61324 * 26 25 24 29 29 N 1.46898 * 109.46960 * 295.06613 * 28 26 25 30 30 H 1.08998 * 109.46626 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46816 * 300.08087 * 1 2 3 32 32 H 1.08990 * 109.47233 * 60.08004 * 1 2 3 33 33 H 1.09005 * 109.58600 * 185.10747 * 4 2 1 34 34 H 1.09000 * 109.58621 * 305.52830 * 4 2 1 35 35 H 0.97005 * 119.99976 * 4.59888 * 8 6 5 36 36 H 1.08001 * 119.96577 * 359.97438 * 10 9 8 37 37 H 1.08000 * 119.93651 * 180.02562 * 11 10 9 38 38 H 1.07995 * 119.96694 * 179.97438 * 12 11 10 39 39 H 0.96999 * 119.99795 * 180.02562 * 18 17 15 40 40 H 1.07995 * 120.06957 * 0.02562 * 23 9 8 41 41 H 1.09005 * 109.58606 * 186.60525 * 24 5 4 42 42 H 1.08996 * 109.58827 * 66.17507 * 24 5 4 43 43 H 1.08998 * 109.49799 * 294.68293 * 25 24 5 44 44 H 1.09000 * 109.49494 * 174.59100 * 25 24 5 45 45 H 1.09000 * 109.46928 * 55.06709 * 28 26 25 46 46 H 1.08993 * 109.46943 * 175.06619 * 28 26 25 47 47 H 1.00903 * 110.99723 * 56.04884 * 29 28 26 48 48 H 1.00905 * 110.99906 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7238 1.2496 5 7 1.6516 -2.1381 1.1696 6 6 0.9748 -2.7221 2.1783 7 8 0.7609 -2.1054 3.2040 8 7 0.5352 -3.9896 2.0500 9 6 -0.2498 -4.5633 3.0565 10 6 -1.2711 -5.4450 2.7246 11 6 -2.0461 -6.0121 3.7178 12 6 -1.8088 -5.7043 5.0437 13 6 -0.7893 -4.8235 5.3820 14 8 -0.5564 -4.5220 6.6850 15 6 -1.4210 -5.0192 7.5923 16 1 -2.2041 -5.6938 7.2790 17 6 -1.3048 -4.6644 8.9277 18 7 -2.1487 -5.1492 9.8129 19 14 0.0491 -3.4971 9.4694 20 1 -0.4450 -2.0985 9.3979 21 1 0.4443 -3.8116 10.8660 22 1 1.2245 -3.6532 8.5753 23 6 -0.0053 -4.2568 4.3871 24 6 2.0141 -2.9040 -0.0308 25 6 1.5031 -2.1557 -1.2660 26 6 2.0409 -0.7231 -1.2484 27 1 3.1306 -0.7446 -1.2352 28 6 1.5607 0.0171 -2.4984 29 7 2.1484 -0.6056 -3.6921 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5151 0.8893 32 1 -0.3633 0.5125 -0.8906 33 1 3.1276 -0.6462 1.2980 34 1 1.6008 -0.2731 2.1389 35 1 0.7628 -4.5043 1.2598 36 1 -1.4593 -5.6873 1.6891 37 1 -2.8391 -6.6975 3.4573 38 1 -2.4166 -6.1489 5.8178 39 1 -2.0676 -4.9007 10.7470 40 1 0.7906 -3.5749 4.6479 41 1 1.5555 -3.8919 0.0137 42 1 3.0980 -3.0043 -0.0868 43 1 0.4133 -2.1354 -1.2541 44 1 1.8481 -2.6628 -2.1671 45 1 0.4737 -0.0376 -2.5579 46 1 1.8696 1.0609 -2.4437 47 1 1.9297 -1.5899 -3.7313 48 1 1.8466 -0.1341 -4.5316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925947755.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:28 Heat of formation + Delta-G solvation = -17.911404 kcal Electronic energy + Delta-G solvation = -28975.543074 eV Core-core repulsion = 25031.457216 eV Total energy + Delta-G solvation = -3944.085858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.96954 -39.40417 -38.49317 -36.68264 -35.28681 -34.34382 -33.02018 -32.31195 -31.46163 -29.60527 -28.65086 -27.38103 -26.51167 -25.14211 -23.73226 -22.89176 -22.01491 -21.32041 -20.23934 -18.98068 -18.46167 -17.91947 -17.30996 -16.50072 -15.99572 -15.84980 -15.61353 -15.16603 -14.96401 -14.78941 -14.51664 -14.42326 -14.00591 -13.81233 -13.59228 -13.53016 -13.40067 -13.07925 -12.87071 -12.67567 -12.30837 -12.23491 -12.10104 -11.81173 -11.61111 -11.41178 -11.16301 -11.14927 -10.95221 -10.77810 -10.70250 -10.68470 -10.19742 -9.92142 -9.66467 -9.26621 -9.15137 -8.81191 -8.76682 -7.72653 -7.25989 -6.35570 -4.01768 2.04508 2.28362 2.54532 3.25695 3.28799 3.34480 3.49835 3.73329 4.04191 4.24587 4.31736 4.32839 4.49591 4.56314 4.68135 4.80439 4.86483 4.95854 4.99811 5.13570 5.17022 5.18450 5.29247 5.39541 5.47627 5.50258 5.54500 5.59990 5.60429 5.76038 5.77247 5.85140 5.87324 6.10118 6.11673 6.16905 6.26079 6.38534 6.51037 6.64495 6.75805 6.93191 6.97690 7.11578 7.17892 7.38304 7.65639 7.86622 7.92748 8.09569 8.62883 9.00325 9.64239 10.71914 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020287 B = 0.002610 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.836720 B =10723.933772 C =11607.845197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 H 0.083 0.917 4 C 0.134 3.866 5 N -0.626 5.626 6 C 0.704 3.296 7 O -0.561 6.561 8 N -0.683 5.683 9 C 0.191 3.809 10 C -0.229 4.229 11 C -0.060 4.060 12 C -0.234 4.234 13 C 0.173 3.827 14 O -0.214 6.214 15 C -0.387 4.387 16 H 0.107 0.893 17 C 0.063 3.937 18 N -0.881 5.881 19 Si 0.904 3.096 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.185 4.185 24 C 0.113 3.887 25 C -0.134 4.134 26 C -0.080 4.080 27 H 0.081 0.919 28 C 0.065 3.935 29 N -0.853 5.853 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.400 0.600 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.279 0.721 40 H 0.134 0.866 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.030 0.970 46 H 0.071 0.929 47 H 0.339 0.661 48 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.926 6.813 -27.263 29.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 H 0.101 0.899 4 C 0.011 3.989 5 N -0.365 5.365 6 C 0.406 3.594 7 O -0.436 6.436 8 N -0.332 5.332 9 C 0.097 3.903 10 C -0.250 4.250 11 C -0.079 4.079 12 C -0.253 4.253 13 C 0.120 3.880 14 O -0.119 6.119 15 C -0.463 4.463 16 H 0.125 0.875 17 C -0.140 4.140 18 N -0.519 5.519 19 Si 0.730 3.270 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.183 1.183 23 C -0.207 4.207 24 C -0.011 4.011 25 C -0.173 4.173 26 C -0.099 4.099 27 H 0.099 0.901 28 C -0.066 4.066 29 N -0.383 5.383 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.237 0.763 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.151 0.849 39 H 0.089 0.911 40 H 0.152 0.848 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.048 0.952 46 H 0.090 0.910 47 H 0.153 0.847 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.599 7.652 -25.847 28.294 hybrid contribution -0.557 -0.118 -0.450 0.725 sum 8.042 7.533 -26.297 28.512 Atomic orbital electron populations 1.21878 0.94686 1.02301 1.01605 1.21531 0.96769 0.99457 0.94357 0.89872 1.21513 0.99241 0.79309 0.98852 1.47215 1.59745 1.11693 1.17841 1.15848 0.78630 0.81455 0.83494 1.90994 1.61347 1.63722 1.27507 1.42671 1.54624 1.12934 1.22990 1.16936 0.91472 0.95383 0.86505 1.20298 0.99663 1.06432 0.98611 1.20532 0.97480 0.97723 0.92141 1.21291 1.02796 1.04378 0.96864 1.18876 0.92501 0.92054 0.84520 1.83586 1.49456 1.66950 1.11896 1.20781 1.10634 1.27821 0.87069 0.87548 1.24450 0.97723 0.97397 0.94383 1.69647 1.35850 1.43510 1.02854 0.86196 0.82406 0.80780 0.77664 1.19832 1.20856 1.18283 1.20176 1.04733 1.06318 0.89460 1.21601 1.00425 0.94499 0.84580 1.22048 1.01600 0.96016 0.97619 1.21152 1.01016 0.94230 0.93484 0.90050 1.21880 0.96277 0.98578 0.89857 1.58759 1.66940 1.07669 1.04944 0.92312 0.92398 0.92827 0.91628 0.88474 0.76273 0.87382 0.86794 0.84872 0.91120 0.84810 0.90594 0.91021 0.91093 0.90726 0.95170 0.91008 0.84744 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.38 37.16 0.31 -0.98 16 2 C -0.10 -0.76 2.72 -90.50 -0.25 -1.01 16 3 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 4 C 0.13 1.33 5.81 -3.71 -0.02 1.31 16 5 N -0.63 -6.84 2.41 -178.50 -0.43 -7.27 16 6 C 0.70 10.91 8.14 -86.92 -0.71 10.20 16 7 O -0.56 -11.42 13.26 5.29 0.07 -11.35 16 8 N -0.68 -9.81 5.25 -14.24 -0.07 -9.88 16 9 C 0.19 3.49 6.28 -83.71 -0.53 2.96 16 10 C -0.23 -3.83 9.96 -39.35 -0.39 -4.22 16 11 C -0.06 -1.09 10.03 -39.64 -0.40 -1.48 16 12 C -0.23 -5.17 9.17 -39.36 -0.36 -5.53 16 13 C 0.17 4.27 6.64 -39.13 -0.26 4.01 16 14 O -0.21 -5.99 8.58 0.05 0.00 -5.99 16 15 C -0.39 -11.29 9.95 30.89 0.31 -10.98 16 16 H 0.11 3.12 5.43 -52.49 -0.29 2.84 16 17 C 0.06 1.84 5.49 -17.52 -0.10 1.74 16 18 N -0.88 -26.01 13.96 55.48 0.77 -25.24 16 19 Si 0.90 22.74 28.62 -169.99 -4.86 17.88 16 20 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.26 -6.61 7.11 56.52 0.40 -6.21 16 23 C -0.19 -4.14 8.63 -39.21 -0.34 -4.48 16 24 C 0.11 0.81 6.43 -3.71 -0.02 0.79 16 25 C -0.13 -0.79 4.82 -26.61 -0.13 -0.92 16 26 C -0.08 -0.50 2.13 -90.58 -0.19 -0.69 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 C 0.06 0.37 5.78 -3.82 -0.02 0.35 16 29 N -0.85 -4.41 9.62 -10.37 -0.10 -4.51 16 30 H 0.06 0.60 5.97 -51.93 -0.31 0.29 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.39 6.58 -51.93 -0.34 0.05 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.10 1.21 7.03 -51.93 -0.37 0.84 16 35 H 0.40 4.16 6.28 -40.82 -0.26 3.91 16 36 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.13 3.06 5.63 -52.49 -0.30 2.77 16 39 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.13 3.19 6.28 -52.49 -0.33 2.86 16 41 H 0.08 0.47 5.56 -51.93 -0.29 0.18 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.49 6.33 -51.93 -0.33 0.16 16 44 H 0.07 0.33 6.62 -51.93 -0.34 -0.02 16 45 H 0.03 0.18 6.74 -51.93 -0.35 -0.17 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.34 1.45 7.22 -39.29 -0.28 1.17 16 48 H 0.34 1.35 9.08 -39.29 -0.36 0.99 16 LS Contribution 371.44 15.07 5.60 5.60 Total: -1.00 -33.84 371.44 -8.77 -42.62 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.65 Total: 7.07 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -3.09 Total: -8.93 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.17 Total: -46.90 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.07 Total: -17.33 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.86 Total: 17.88 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.84 -8.77 -42.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925947755.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.705 kcal (2) G-P(sol) polarization free energy of solvation -33.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds