Wall clock time and date at job start Tue Mar 31 2020 17:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.52789 * 2 1 4 4 C 1.53193 * 109.49936 * 120.08221 * 2 1 3 5 5 N 1.46921 * 108.77606 * 65.31524 * 4 2 1 6 6 C 1.34777 * 120.63263 * 233.58781 * 5 4 2 7 7 O 1.21585 * 119.99912 * 354.96941 * 6 5 4 8 8 N 1.34773 * 120.00232 * 174.97140 * 6 5 4 9 9 C 1.39944 * 120.00165 * 184.61003 * 8 6 5 10 10 C 1.38953 * 120.03903 * 144.32302 * 9 8 6 11 11 C 1.38156 * 120.07154 * 179.97438 * 10 9 8 12 12 C 1.38172 * 120.13717 * 0.02562 * 11 10 9 13 13 C 1.38915 * 120.06676 * 359.97438 * 12 11 10 14 14 O 1.35748 * 120.03112 * 180.02562 * 13 12 11 15 15 C 1.34833 * 117.00248 * 354.44643 * 14 13 12 16 16 H 1.08001 * 119.99906 * 5.09514 * 15 14 13 17 17 C 1.38654 * 120.00011 * 185.09771 * 15 14 13 18 18 N 1.31553 * 119.99933 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99849 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47545 * 89.99989 * 19 17 15 21 21 H 1.48505 * 109.46838 * 209.99739 * 19 17 15 22 22 H 1.48504 * 109.47304 * 329.99783 * 19 17 15 23 23 C 1.38711 * 120.03090 * 324.04130 * 9 8 6 24 24 C 1.46928 * 118.73892 * 53.61315 * 5 4 2 25 25 C 1.53197 * 108.77099 * 306.38973 * 24 5 4 26 26 C 1.53034 * 109.31448 * 54.63805 * 25 24 5 27 27 H 1.09001 * 109.45151 * 58.64263 * 26 25 24 28 28 C 1.53003 * 109.46060 * 178.61324 * 26 25 24 29 29 N 1.46898 * 109.46960 * 295.06613 * 28 26 25 30 30 H 1.08998 * 109.46626 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46816 * 300.08087 * 1 2 3 32 32 H 1.08990 * 109.47233 * 60.08004 * 1 2 3 33 33 H 1.09005 * 109.58600 * 185.10747 * 4 2 1 34 34 H 1.09000 * 109.58621 * 305.52830 * 4 2 1 35 35 H 0.97005 * 119.99976 * 4.59888 * 8 6 5 36 36 H 1.08001 * 119.96577 * 359.97438 * 10 9 8 37 37 H 1.08000 * 119.93651 * 180.02562 * 11 10 9 38 38 H 1.07995 * 119.96694 * 179.97438 * 12 11 10 39 39 H 0.96999 * 119.99795 * 180.02562 * 18 17 15 40 40 H 1.07995 * 120.06957 * 0.02562 * 23 9 8 41 41 H 1.09005 * 109.58606 * 186.60525 * 24 5 4 42 42 H 1.08996 * 109.58827 * 66.17507 * 24 5 4 43 43 H 1.08998 * 109.49799 * 294.68293 * 25 24 5 44 44 H 1.09000 * 109.49494 * 174.59100 * 25 24 5 45 45 H 1.09000 * 109.46928 * 55.06709 * 28 26 25 46 46 H 1.08993 * 109.46943 * 175.06619 * 28 26 25 47 47 H 1.00903 * 110.99723 * 56.04884 * 29 28 26 48 48 H 1.00905 * 110.99906 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7238 1.2496 5 7 1.6516 -2.1381 1.1696 6 6 0.9748 -2.7221 2.1783 7 8 0.7609 -2.1054 3.2040 8 7 0.5352 -3.9896 2.0500 9 6 -0.2498 -4.5633 3.0565 10 6 -1.2711 -5.4450 2.7246 11 6 -2.0461 -6.0121 3.7178 12 6 -1.8088 -5.7043 5.0437 13 6 -0.7893 -4.8235 5.3820 14 8 -0.5564 -4.5220 6.6850 15 6 -1.4210 -5.0192 7.5923 16 1 -2.2041 -5.6938 7.2790 17 6 -1.3048 -4.6644 8.9277 18 7 -2.1487 -5.1492 9.8129 19 14 0.0491 -3.4971 9.4694 20 1 -0.4450 -2.0985 9.3979 21 1 0.4443 -3.8116 10.8660 22 1 1.2245 -3.6532 8.5753 23 6 -0.0053 -4.2568 4.3871 24 6 2.0141 -2.9040 -0.0308 25 6 1.5031 -2.1557 -1.2660 26 6 2.0409 -0.7231 -1.2484 27 1 3.1306 -0.7446 -1.2352 28 6 1.5607 0.0171 -2.4984 29 7 2.1484 -0.6056 -3.6921 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5151 0.8893 32 1 -0.3633 0.5125 -0.8906 33 1 3.1276 -0.6462 1.2980 34 1 1.6008 -0.2731 2.1389 35 1 0.7628 -4.5043 1.2598 36 1 -1.4593 -5.6873 1.6891 37 1 -2.8391 -6.6975 3.4573 38 1 -2.4166 -6.1489 5.8178 39 1 -2.0676 -4.9007 10.7470 40 1 0.7906 -3.5749 4.6479 41 1 1.5555 -3.8919 0.0137 42 1 3.0980 -3.0043 -0.0868 43 1 0.4133 -2.1354 -1.2541 44 1 1.8481 -2.6628 -2.1671 45 1 0.4737 -0.0376 -2.5579 46 1 1.8696 1.0609 -2.4437 47 1 1.9297 -1.5899 -3.7313 48 1 1.8466 -0.1341 -4.5316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925947755.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:27 Heat of formation + Delta-G solvation = -41.931286 kcal Electronic energy + Delta-G solvation = -28976.584654 eV Core-core repulsion = 25031.457216 eV Total energy + Delta-G solvation = -3945.127438 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.06050 -40.83386 -39.74327 -38.26496 -36.11149 -35.62923 -34.45270 -33.78915 -32.09040 -31.26834 -30.14484 -28.03081 -27.43877 -27.13032 -24.42312 -24.06545 -23.16607 -22.71443 -21.41410 -20.06901 -19.84094 -19.33097 -18.88312 -17.43758 -17.04143 -16.83599 -16.76907 -16.48769 -16.19174 -15.96266 -15.68590 -15.63760 -15.48067 -15.14518 -14.81903 -14.40552 -14.31075 -14.24392 -14.19126 -14.05509 -13.69327 -13.37855 -13.25709 -12.94944 -12.79228 -12.72042 -12.51104 -12.45858 -12.06972 -12.02130 -11.77219 -11.58313 -11.36748 -11.30865 -11.23620 -10.92234 -10.87672 -9.77145 -9.50284 -9.33612 -8.88922 -8.51818 -6.23260 0.44040 0.65363 1.26012 1.31013 1.45387 1.48563 2.01970 2.26003 2.70068 2.77131 3.09359 3.19869 3.57921 3.69845 3.72513 3.97758 4.08224 4.12100 4.20306 4.29847 4.35145 4.39450 4.43410 4.55046 4.60638 4.64673 4.67682 4.72301 4.76782 4.82837 4.91289 4.92066 4.94852 5.04153 5.15796 5.18272 5.24350 5.34920 5.36181 5.44959 5.50667 5.59021 5.67979 5.79189 5.87166 5.91750 6.23408 6.30239 6.64801 6.82356 6.83571 7.44599 7.60438 8.59644 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020287 B = 0.002610 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.836720 B =10723.933772 C =11607.845197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 H 0.095 0.905 4 C 0.129 3.871 5 N -0.614 5.614 6 C 0.696 3.304 7 O -0.617 6.617 8 N -0.667 5.667 9 C 0.200 3.800 10 C -0.195 4.195 11 C -0.050 4.050 12 C -0.249 4.249 13 C 0.134 3.866 14 O -0.250 6.250 15 C -0.397 4.397 16 H 0.089 0.911 17 C 0.014 3.986 18 N -0.919 5.919 19 Si 0.963 3.037 20 H -0.271 1.271 21 H -0.260 1.260 22 H -0.272 1.272 23 C -0.202 4.202 24 C 0.105 3.895 25 C -0.128 4.128 26 C -0.073 4.073 27 H 0.082 0.918 28 C 0.069 3.931 29 N -0.858 5.858 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.423 0.577 36 H 0.165 0.835 37 H 0.157 0.843 38 H 0.114 0.886 39 H 0.285 0.715 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.030 0.970 46 H 0.069 0.931 47 H 0.345 0.655 48 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.816 6.454 -32.023 33.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.113 0.887 4 C 0.006 3.994 5 N -0.351 5.351 6 C 0.398 3.602 7 O -0.497 6.497 8 N -0.319 5.319 9 C 0.105 3.895 10 C -0.216 4.216 11 C -0.069 4.069 12 C -0.269 4.269 13 C 0.085 3.915 14 O -0.158 6.158 15 C -0.473 4.473 16 H 0.106 0.894 17 C -0.185 4.185 18 N -0.559 5.559 19 Si 0.786 3.214 20 H -0.196 1.196 21 H -0.184 1.184 22 H -0.197 1.197 23 C -0.224 4.224 24 C -0.017 4.017 25 C -0.166 4.166 26 C -0.092 4.092 27 H 0.100 0.900 28 C -0.062 4.062 29 N -0.390 5.390 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.265 0.735 36 H 0.182 0.818 37 H 0.175 0.825 38 H 0.132 0.868 39 H 0.095 0.905 40 H 0.127 0.873 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.117 0.883 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.159 0.841 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.523 7.276 -30.730 32.984 hybrid contribution -0.811 -0.017 0.606 1.013 sum 8.711 7.259 -30.124 32.188 Atomic orbital electron populations 1.21838 0.95551 1.01357 1.01327 1.21473 0.95852 1.00030 0.93879 0.88693 1.21623 0.99941 0.78945 0.98905 1.47273 1.57903 1.12133 1.17789 1.16114 0.78837 0.81525 0.83683 1.90976 1.63507 1.65038 1.30152 1.42452 1.53891 1.12797 1.22731 1.17070 0.91857 0.94847 0.85722 1.20877 0.96632 1.03082 1.00962 1.21005 0.98178 0.97458 0.90238 1.21349 1.02319 1.04496 0.98749 1.19376 0.94497 0.93849 0.83815 1.83535 1.50144 1.68831 1.13262 1.20772 1.10748 1.27832 0.87943 0.89373 1.25162 0.99895 0.99016 0.94414 1.69708 1.37559 1.45316 1.03366 0.85342 0.79308 0.78865 0.77916 1.19589 1.18378 1.19695 1.20197 1.04447 1.06566 0.91205 1.21961 1.01713 0.94835 0.83218 1.22017 1.01197 0.95664 0.97724 1.21080 1.00919 0.94411 0.92801 0.89985 1.21786 0.96208 0.98412 0.89761 1.58746 1.66979 1.08203 1.05052 0.93526 0.94633 0.91132 0.90136 0.91755 0.73485 0.81792 0.82518 0.86791 0.90541 0.87261 0.89046 0.89390 0.91657 0.88285 0.95193 0.91241 0.84057 0.83916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.38 71.98 0.60 -1.74 16 2 C -0.09 -1.24 2.72 -10.71 -0.03 -1.27 16 3 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 4 C 0.13 2.48 5.81 86.36 0.50 2.98 16 5 N -0.61 -12.39 2.41 -836.90 -2.02 -14.41 16 6 C 0.70 21.09 8.14 179.06 1.46 22.54 16 7 O -0.62 -26.13 13.26 -3.98 -0.05 -26.18 16 8 N -0.67 -17.45 5.25 -317.24 -1.67 -19.11 16 9 C 0.20 6.94 6.28 38.13 0.24 7.18 16 10 C -0.19 -5.63 9.96 22.42 0.22 -5.41 16 11 C -0.05 -1.67 10.03 22.23 0.22 -1.45 16 12 C -0.25 -11.26 9.17 22.42 0.21 -11.05 16 13 C 0.13 6.92 6.64 22.56 0.15 7.07 16 14 O -0.25 -14.92 8.58 -22.75 -0.20 -15.11 16 15 C -0.40 -24.61 9.95 67.92 0.68 -23.93 16 16 H 0.09 5.59 5.43 -2.91 -0.02 5.57 16 17 C 0.01 0.84 5.49 84.83 0.47 1.30 16 18 N -0.92 -56.53 13.96 21.61 0.30 -56.23 16 19 Si 0.96 49.03 28.62 68.60 1.96 50.99 16 20 H -0.27 -13.50 7.11 99.48 0.71 -12.79 16 21 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.27 -14.26 7.11 99.48 0.71 -13.56 16 23 C -0.20 -9.32 8.63 22.51 0.19 -9.12 16 24 C 0.10 1.12 6.43 86.36 0.56 1.67 16 25 C -0.13 -1.00 4.82 30.67 0.15 -0.85 16 26 C -0.07 -0.68 2.13 -10.77 -0.02 -0.70 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 C 0.07 0.57 5.78 86.30 0.50 1.07 16 29 N -0.86 -5.95 9.62 -186.72 -1.80 -7.75 16 30 H 0.05 0.87 5.97 -2.39 -0.01 0.86 16 31 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.90 6.58 -2.39 -0.02 0.88 16 33 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.06 1.69 7.03 -2.39 -0.02 1.67 16 35 H 0.42 6.91 6.28 -92.70 -0.58 6.33 16 36 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.16 3.92 8.06 -2.91 -0.02 3.89 16 38 H 0.11 5.55 5.63 -2.91 -0.02 5.53 16 39 H 0.28 16.07 8.31 -92.71 -0.77 15.30 16 40 H 0.11 5.55 6.28 -2.91 -0.02 5.53 16 41 H 0.09 0.69 5.56 -2.38 -0.01 0.68 16 42 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.06 0.64 6.33 -2.39 -0.02 0.63 16 44 H 0.10 0.37 6.62 -2.39 -0.02 0.35 16 45 H 0.03 0.26 6.74 -2.39 -0.02 0.24 16 46 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.35 1.60 7.22 -89.69 -0.65 0.95 16 48 H 0.35 1.69 9.08 -89.69 -0.81 0.87 16 Total: -1.00 -81.27 371.44 1.61 -79.65 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -1.01 Total: 19.86 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 6.09 Total: -11.70 kcal Atomic # 7 Polarization: -92.33 SS G_CDS: -5.18 Total: -97.50 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -0.25 Total: -41.29 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 1.96 Total: 50.99 kcal Total: -81.27 1.61 -79.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925947755.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.722 kcal (2) G-P(sol) polarization free energy of solvation -81.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds