Wall clock time and date at job start Tue Mar 31 2020 18:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 108.97776 * 2 1 4 4 C 1.54259 * 108.99507 * 241.15422 * 2 1 3 5 5 N 1.44317 * 108.62127 * 160.70635 * 4 2 1 6 6 C 1.46902 * 111.04079 * 219.92294 * 5 4 2 7 7 C 1.52998 * 109.47118 * 165.77660 * 6 5 4 8 8 H 1.08997 * 109.47338 * 54.99585 * 7 6 5 9 9 C 1.47202 * 109.46617 * 294.99625 * 7 6 5 10 10 N 4.91042 * 131.67030 * 325.64666 * 2 1 3 11 11 C 1.52996 * 109.47386 * 175.00141 * 7 6 5 12 12 C 1.50702 * 109.47303 * 184.99606 * 11 7 6 13 13 H 1.07992 * 119.99723 * 359.97438 * 12 11 7 14 14 C 1.37871 * 119.99810 * 179.97438 * 12 11 7 15 15 N 1.31517 * 120.00371 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99839 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47015 * 60.00395 * 16 14 12 18 18 H 1.48506 * 109.47061 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47219 * 300.00332 * 16 14 12 20 20 C 1.48196 * 114.19906 * 93.48996 * 5 4 2 21 21 C 1.53926 * 112.77490 * 318.13199 * 20 5 4 22 22 N 1.44266 * 112.54507 * 318.38153 * 21 20 5 23 23 C 1.46905 * 110.99892 * 217.13773 * 22 21 20 24 24 C 1.52999 * 109.46490 * 160.08587 * 23 22 21 25 25 F 1.39900 * 109.47281 * 65.92882 * 24 23 22 26 26 F 1.39906 * 109.46766 * 185.92699 * 24 23 22 27 27 F 1.39897 * 109.47269 * 305.92537 * 24 23 22 28 28 C 1.46138 * 108.99608 * 118.84955 * 2 1 3 29 29 H 1.08997 * 109.47044 * 300.00162 * 1 2 3 30 30 H 1.08998 * 109.47344 * 59.99495 * 1 2 3 31 31 H 1.09000 * 109.47278 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.60818 * 280.53830 * 4 2 1 33 33 H 1.09008 * 109.60810 * 41.03458 * 4 2 1 34 34 H 1.09002 * 109.46692 * 285.77340 * 6 5 4 35 35 H 1.08996 * 109.47260 * 45.77160 * 6 5 4 36 36 H 1.09001 * 109.46660 * 304.99785 * 11 7 6 37 37 H 1.09003 * 109.47141 * 64.99248 * 11 7 6 38 38 H 0.96999 * 120.00326 * 179.97438 * 15 14 12 39 39 H 1.09003 * 108.82408 * 197.27917 * 20 5 4 40 40 H 1.09004 * 108.82108 * 78.98165 * 20 5 4 41 41 H 1.09001 * 108.87072 * 197.59453 * 21 20 5 42 42 H 1.09003 * 108.87013 * 79.17568 * 21 20 5 43 43 H 1.08994 * 109.46714 * 280.08440 * 23 22 21 44 44 H 1.08994 * 109.47094 * 40.08867 * 23 22 21 45 45 H 1.09000 * 108.93718 * 302.18070 * 28 2 1 46 46 H 1.08997 * 108.93405 * 60.87346 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8845 1.0308 0.0000 4 6 2.0321 -0.7037 -1.2776 5 7 3.4026 -0.3154 -1.5093 6 6 3.6532 -0.0932 -2.9396 7 6 4.9810 0.6464 -3.1158 8 1 5.7751 0.0914 -2.6164 9 6 4.8757 1.9907 -2.5255 10 7 4.7946 3.0282 -2.0698 11 6 5.3032 0.7678 -4.6065 12 6 6.6670 1.3859 -4.7769 13 1 7.2458 1.6646 -3.9089 14 6 7.1757 1.5956 -6.0411 15 7 6.4706 1.2566 -7.0983 16 14 8.8666 2.3611 -6.2524 17 1 9.8841 1.5030 -5.5940 18 1 9.1792 2.4791 -7.6993 19 1 8.8802 3.7101 -5.6318 20 6 4.4029 -1.2445 -0.9328 21 6 4.0212 -1.7314 0.4767 22 7 3.4839 -0.6756 1.3000 23 6 3.9259 -0.8181 2.6937 24 6 3.7762 0.5225 3.4157 25 9 2.4201 0.8532 3.5088 26 9 4.3214 0.4236 4.7003 27 9 4.4504 1.5164 2.6982 28 6 2.0057 -0.6667 1.2103 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.9736 -1.7843 -1.1471 33 1 1.4187 -0.4017 -2.1267 34 1 3.7012 -1.0533 -3.4534 35 1 2.8455 0.5047 -3.3614 36 1 5.2935 -0.2223 -5.0621 37 1 4.5560 1.3974 -5.0896 38 1 6.8284 1.4045 -7.9877 39 1 5.3658 -0.7363 -0.8805 40 1 4.4993 -2.1091 -1.5895 41 1 4.9084 -2.1392 0.9611 42 1 3.2762 -2.5221 0.3868 43 1 3.3153 -1.5701 3.1933 44 1 4.9711 -1.1268 2.7136 45 1 1.6016 -0.1500 2.0809 46 1 1.6463 -1.6957 1.2117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930654993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:22 Heat of formation + Delta-G solvation = -120.016018 kcal Electronic energy + Delta-G solvation = -30190.271435 eV Core-core repulsion = 25699.901249 eV Total energy + Delta-G solvation = -4490.370186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.172 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.18238 -47.79229 -47.54097 -39.87501 -37.26249 -35.55926 -34.59123 -33.44421 -31.70925 -30.41033 -28.22000 -27.13631 -25.89365 -24.88363 -23.20453 -22.43237 -21.70185 -20.47236 -20.09493 -18.60116 -18.56399 -17.66351 -16.92701 -16.42177 -16.03948 -15.80408 -15.32264 -15.04059 -14.71512 -14.56339 -14.48459 -14.19248 -14.15362 -13.82719 -13.76021 -13.59654 -13.46599 -13.13117 -13.10222 -12.82201 -12.73976 -12.33140 -12.23945 -11.98506 -11.87482 -11.62194 -11.38962 -11.27324 -11.08750 -11.04863 -10.95107 -10.81973 -10.57638 -10.55291 -10.44368 -10.06688 -9.46260 -9.18957 -8.75711 -8.42309 -7.92716 -6.06656 -4.09433 2.55357 3.21559 3.33349 3.37462 3.41785 3.66739 3.83586 3.86195 3.94390 4.02888 4.23883 4.43992 4.60993 4.68244 4.82213 4.82880 4.92171 4.98721 5.03783 5.15352 5.27330 5.31187 5.31622 5.36237 5.51968 5.59764 5.60516 5.66175 5.70747 5.84505 5.99898 6.05024 6.06247 6.12661 6.34564 6.45514 6.54343 6.58587 6.74061 7.29653 7.43324 7.47637 7.57626 7.88968 8.27296 8.72861 8.95515 9.55882 11.04262 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.015097 B = 0.003100 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.209703 B = 9030.151559 C = 9928.897630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.090 0.910 4 C 0.075 3.925 5 N -0.545 5.545 6 C 0.069 3.931 7 C 0.012 3.988 8 H 0.098 0.902 9 C 0.257 3.743 10 N -0.478 5.478 11 C 0.031 3.969 12 C -0.525 4.525 13 H 0.056 0.944 14 C 0.063 3.937 15 N -0.893 5.893 16 Si 0.891 3.109 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.069 3.931 21 C 0.060 3.940 22 N -0.515 5.515 23 C 0.011 3.989 24 C 0.456 3.544 25 F -0.184 7.184 26 F -0.189 7.189 27 F -0.165 7.165 28 C 0.050 3.950 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.035 0.965 37 H 0.025 0.975 38 H 0.262 0.738 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.079 0.921 44 H 0.118 0.882 45 H 0.084 0.916 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.527 -11.667 19.154 24.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.108 0.892 4 C -0.054 4.054 5 N -0.269 5.269 6 C -0.059 4.059 7 C -0.010 4.010 8 H 0.115 0.885 9 C -0.060 4.060 10 N -0.155 5.155 11 C -0.007 4.007 12 C -0.563 4.563 13 H 0.074 0.926 14 C -0.139 4.139 15 N -0.532 5.532 16 Si 0.718 3.282 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.059 4.059 21 C -0.068 4.068 22 N -0.238 5.238 23 C -0.119 4.119 24 C 0.401 3.599 25 F -0.166 7.166 26 F -0.170 7.170 27 F -0.147 7.147 28 C -0.077 4.077 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.061 0.939 43 H 0.097 0.903 44 H 0.136 0.864 45 H 0.103 0.897 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.402 -9.224 19.713 24.123 hybrid contribution 0.640 -1.218 -0.373 1.426 sum -9.763 -10.443 19.340 24.050 Atomic orbital electron populations 1.21813 0.94905 1.01424 1.02142 1.20142 0.94376 1.02393 0.93959 0.89183 1.21804 0.89245 0.96883 0.97465 1.60346 1.02306 1.49264 1.14987 1.22294 0.97852 0.99322 0.86457 1.19202 0.96925 0.84871 1.00043 0.88454 1.28771 0.91641 0.94426 0.91200 1.80980 1.10071 1.12787 1.11675 1.19162 0.97349 0.98526 0.85675 1.21112 1.01683 1.41173 0.92303 0.92563 1.24941 0.97583 0.95405 0.95986 1.69929 1.37600 1.47606 0.98046 0.86669 0.84462 0.80079 0.76961 1.20083 1.21237 1.20200 1.22470 0.96506 0.94248 0.92639 1.22005 0.99531 0.91079 0.94232 1.61177 1.10112 1.47993 1.04502 1.23300 1.05245 0.91747 0.91623 1.20531 0.73579 0.88816 0.76956 1.93080 1.33620 1.93947 1.95930 1.93176 1.85982 1.96467 1.41425 1.93263 1.79814 1.64092 1.77503 1.21548 0.85674 0.99834 1.00596 0.92669 0.92120 0.93069 0.94774 0.91141 0.93175 0.90357 0.94630 0.95665 0.92797 0.90011 0.93945 0.90619 0.93925 0.90284 0.86379 0.89749 0.94512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.01 37.16 0.33 -0.91 16 2 C -0.09 -0.95 2.60 -93.22 -0.24 -1.19 16 3 H 0.09 1.26 8.12 -51.93 -0.42 0.84 16 4 C 0.07 0.81 4.77 -4.55 -0.02 0.79 16 5 N -0.54 -7.08 3.84 -234.21 -0.90 -7.98 16 6 C 0.07 1.01 4.23 -3.82 -0.02 0.99 16 7 C 0.01 0.22 2.13 -93.41 -0.20 0.02 16 8 H 0.10 1.70 6.57 -51.93 -0.34 1.36 16 9 C 0.26 5.50 13.67 -20.76 -0.28 5.22 16 10 N -0.48 -11.24 18.54 42.16 0.78 -10.46 16 11 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 12 C -0.52 -14.02 8.60 -34.44 -0.30 -14.32 16 13 H 0.06 1.50 7.59 -52.49 -0.40 1.11 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 16 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.07 0.77 5.23 -2.63 -0.01 0.76 16 21 C 0.06 0.53 5.13 -4.75 -0.02 0.50 16 22 N -0.51 -5.14 4.14 -239.23 -0.99 -6.13 16 23 C 0.01 0.09 5.01 -3.82 -0.02 0.07 16 24 C 0.46 4.77 3.28 37.16 0.12 4.89 16 25 F -0.18 -2.03 14.64 2.25 0.03 -2.00 16 26 F -0.19 -1.93 17.32 2.25 0.04 -1.89 16 27 F -0.17 -2.29 17.13 2.25 0.04 -2.25 16 28 C 0.05 0.47 3.95 -6.42 -0.03 0.44 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.53 8.11 -51.93 -0.42 0.11 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.03 0.33 6.96 -51.93 -0.36 -0.03 16 33 H 0.07 0.76 7.17 -51.92 -0.37 0.39 16 34 H 0.05 0.67 7.98 -51.93 -0.41 0.26 16 35 H 0.08 1.17 7.65 -51.93 -0.40 0.77 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.08 1.03 6.90 -51.93 -0.36 0.67 16 40 H 0.04 0.43 7.93 -51.93 -0.41 0.02 16 41 H 0.08 0.53 7.20 -51.93 -0.37 0.15 16 42 H 0.04 0.34 6.54 -51.93 -0.34 0.00 16 43 H 0.08 0.45 7.98 -51.93 -0.41 0.04 16 44 H 0.12 0.75 7.45 -51.93 -0.39 0.36 16 45 H 0.08 0.81 5.17 -51.93 -0.27 0.54 16 46 H 0.04 0.30 7.37 -51.93 -0.38 -0.08 16 LS Contribution 374.80 15.07 5.65 5.65 Total: -1.00 -31.43 374.80 -7.43 -38.86 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -6.89 Total: -4.83 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -0.91 Total: -0.48 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -0.37 Total: -49.44 kcal Atomic # 9 Polarization: -6.25 SS G_CDS: 0.11 Total: -6.14 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.43 -7.43 -38.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930654993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.156 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds